Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23656 LG5 67447318 67450125 PREDICTED: shaggy-related protein kinase eta-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
G/A 67447613 upstream_gene_variant
G/T 67447965 upstream_gene_variant
T/A 67448108 upstream_gene_variant
A/T 67448167 upstream_gene_variant
C/T 67448238 missense_variant p.Cys214Tyr
C/T 67448276 splice_region_variant&intron_variant
A/G 67448277 splice_region_variant&intron_variant
A/T 67448278 splice_region_variant&intron_variant
G/T 67448289 upstream_gene_variant
C/G 67448297 upstream_gene_variant
G/A 67448314 upstream_gene_variant
C/T 67448321 upstream_gene_variant
T/A 67448417 upstream_gene_variant
T/A 67448426 upstream_gene_variant
A/G 67448679 upstream_gene_variant
T/G 67448848 upstream_gene_variant
C/T 67448936 upstream_gene_variant
T/A 67448943 upstream_gene_variant
A/G 67449031 upstream_gene_variant
G/A 67449045 upstream_gene_variant
G/T 67449086 splice_region_variant&intron_variant
T/G 67449093 splice_region_variant&synonymous_variant p.Leu185Leu
A/T 67449094 missense_variant&splice_region_variant p.Leu185Gln
A/G 67449240 upstream_gene_variant
G/A 67449242 upstream_gene_variant
T/A 67450055 missense_variant p.Lys24Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23656.1
MSSSVVNDNDSLTGHIISTTIGGKNGEPKQTISYKAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVLDHPNVISLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCNALEACVHPFFDELREPIARLPNGRSFPPLFNFKQELTGASPELINKLIPDHVKRQIGIQFVHPIGS*


CDS Sequence:
>Vu_23656.1
ATGTCCTCCTCGGTCGTCAATGACAATGATTCCCTCACTGGTCACATCATATCCACAACTATCGGAGGCAAAAACGGGGAGCCCAAACAGACTATTAGTTACAAGGCCGAACGAGTTGTAGGAACTGGCTCGTTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAAAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTACAGTTAATGCGAGTCTTGGATCATCCAAATGTGATCTCACTGAAGCATTGTTTCTTCTCAACTACAAGTACAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTACAGCAATGCTAATCAAAGAATGCCGATCATCTATGTGAAACTTTACATGTACCAGATTTTCAGGGGATTGGCTTATATTCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATTCTGGTGGATCCTCTTACACACCAAGTAAAGCTATGTGATTTTGGAAGTGCCAAAGTTCTACCATTATTCCCAGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGTTGCATGAATCCCAATTACAATGACTTTAGATTTCCACAGATAAAAGCACACCCATGGCACAAGATTTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTGGCATCTCGGCTTTTGCAATACTCTCCAAGTCTTCGGTGTAATGCGCTTGAAGCATGTGTACATCCTTTCTTTGATGAACTTCGAGAGCCCATTGCTCGCCTGCCAAATGGCCGTTCATTTCCTCCTCTATTTAACTTCAAACAGGAATTAACCGGAGCATCTCCAGAGCTTATTAACAAGTTGATACCTGACCATGTGAAGCGGCAAATAGGGATACAATTTGTTCATCCAATAGGATCGTGA


Promoter Sequence:
>Vu_23656::LG5:67450125-67452125(-)
ATTTTATTTTACTATAATAATAAAACATAAATATTATATCTTCCATTTTAATTTACAAATATATAATAAAATTAATTTAAAATTTTAGTAATTTAATTAAAATTTTTAAATAATATTTTCCCTTCAAATTTTCTTAACATTGCAACGAAAGTTCAAAGAGTAAAAGTATTATGGCTTTCTATGTTTTAATATTTCTTTTAATCCTCAATTCTCACACTTTCAAAACATTTATTTCCCTATTTTTTTTTTCCGTCCGGAAATAAACATACGGTTAGGTTTTTAAAACTATTCTACATAAACAAAACAACATAAATAATAAAAATAAATTGAAACCAATAATATATATTTTTTAATAGAATATTTCTACATGAACTAAAAATATATAAAATATAACTAAAATGGTATACACTACCCCAAATTAAAGAATGAATGGGTGATGTGTTAGAGTGGACCTAATTATATGATTAAATGACATAATCATTGAGAGGCTCTGCCGACGTTAAAACAATAAAGCCAAAAACAGGAAACTCGAGCATCATGGTGGTTATTAATTACGTACCTTTTAATTTTTTACTTTAATTTGTTTATATTTTTATTATCATTATCATTTCAGTTAAGCACATCTAATGATTGTGATTAACAGCCAGGTCTTCCTAATCTGCAAAGATAGTCAATAAAAGCGGGAAAAATCGAAAACAAATAAATAAAAAATGACAGGAAGACAGGAAAGAAAAGAGTGGAAAAGGGAGAGCTGTGATCACATGGACTTGTCTTTCCCTTACTGGCTCCTTCATTCTACCTTTTCTTTCATACCCTCTCTTTCTCTCTTTCCATTCTCTTCTTCTTCTTCTTCTTTTTCCTAGATTCTTCCTCTTTTCTCTCTACCCTCTGCCATGGCTGAGGATAAGGTACTTTTCCAGCTCAAAAAATTCTCTTGATAGTCTTGTTATTGTATGGTTGGTGAGAAAGCGTAGTGACCCAGAAATGGGAGAGTTGAAAATGTCTCTTGGGATTTTCTCGTTGGTTAGTGGATGAAACGGAAATCATATGGGATGCATAATTTTTGTTTTTATATTTATTTAGTTTTTGTTTATTCCTTTCAGTTGGAAAAAGGGGATGTTGGGGTTTGTTATTTGGGGATGAAAATTCTTTTTTTCTTTTGGCTGAAAGTTTTGTCTTTGAGCTTAAGGCTGAAAGCCATGTTTTGCTATTTTTGGAGTTGATCTATGGTTTTCCGTGAAGTTTCAATTTTTTTTTTTCTTGAAAGAGGTCCTGAACTGGGTTTTATACTTAGTTGAGATTTGTTTGTTTCCGACCCCTGTATCGTACTCTGATCTTGTATATTATAATCTTATGTCATTGTCGCACTCTTAGCTATTTGTGTTTTTCTTGTTTGTCCTGAACTTATTATGATAGTTTCGTTTTCTAGTTGTTCACGAGATTTTCTTTTATTTCTGACTCTGTTATCCAGTTTTCTGTTATCTGCATTAGCCGTTACTTTATTTTTATTTATTTTAGTTACATTACTGGTTGTGTTCCCTTCTGTTCTTACTTTCAACGACTTCAATTGGAGTTTGTACTCTTAACATAGTACTGTTATAGTTCTTGGTTCCATGTCTATAATTTTCTTAGCAGAATATTTCCACCACTGAAGTTTCCAAAATATCATTCTGAAGTTGCTCTCACCCGGTGTTTTTTTTTCTCATGTTATTCTCAAACTTGAGTTATTAAATGTGATGTTCTAATTGGGTATTTTTTTATCATCATAACCTCCAACTAGTGTTTTTTATATGGCTTCCAGTTGGTTAAATGCATTCTTCCAACTTTTACATGCTGTTTATCATCGTAGTCTCCACCTAGTTTTTTAATGTCTGCCTATTGTTTAAGTGTATTCTTCCAACTTTTAGCTTCCTTCTGAGACCATTAGCAAATGATTCAAAAATATTTTGTGAAGAAGGTTAGGATTCTAATATTTTATATACCTTTACAATTTAAAGGAG


Gene Sequence:
>Vu_23656(-)
ATGTCCTCCTCGGTCGTCAATGACAATGATTCCCTCACTGGTCACATCATATCCACAACTATCGGAGGCAAAAACGGGGAGCCCAAACAGGTATCATCTTTGTAAATTCCTTTCTGCTAATAATATTAGGCTTATGTTGATTTGTTGCTTGGTTGTTAAAAATGCCGTATGACATTTATCTTGGACTGCAAATTTAATGTCTTTCTACAATCATCATCGTAGACTATTAGTTACAAGGCCGAACGAGTTGTAGGAACTGGCTCGTTTGGAATTGTTTTCCAGGTATGCTAATTGTTTAATACTTGGTTTATTACTCTTGCTATCTTCGTCACATATGTTGATAATTCTTTGTCTTGTAGGCAAAATGCTTGGAAACTGGGGAGGCAGTGGCCATTAAAAAGGTTTTACAGGACAGAAGATACAAGAACCGTGAACTACAGTTAATGCGAGTCTTGGATCATCCAAATGTGATCTCACTGAAGCATTGTTTCTTCTCAACTACAAGTACAGATGAACTTTTTCTAAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTAAAGCACTACAGCAATGCTAATCAAAGAATGCCGATCATCTATGTGAAACTTTACATGTACCAGGTATGCCTAATACTTTTTGGTGATTTATTAATATCTCTGATTTATTAAAGCGGTGTCTGATAAAAGTTTGTGGCATGCTAGCAGATTTTCAGGGGATTGGCTTATATTCACACTGTTCCCAAAGTTTGCCACAGAGACTTGAAGCCTCAAAATATTCTGGTTTGTTCACATGTTTTTTAATATGTATATATTGTGAGAGAACTTCTTTATATGTGAGAATGAGAGAAGTAAAAATGGCACACACACACACACATATATATATATATATATATATATTTGTCTTATTCATTCTTAAAAAAATAGTCAATATTTCTGACTTTAATGTGTTTCTATGAATATTTCAGGTGGATCCTCTTACACACCAAGTAAAGCTATGTGATTTTGGAAGTGCCAAAGTTCTAGTAGGTCTTATTTTGCTTTGGTATGCTTAGTTTTTGTCCACCTTTTTCACACACCATTATCTTTTATATTGACTAAGTAATAGCTTAGAATGTCAACCAATAACCTATCCACGGCCCAAAAAAATTGTACTTTATATGAAACAGTTCCAATTTTTCGATGTTTTGATTTCAGTATCTTGTGTTGATGTCTTGCTGTGCTTGACACCAAAACGTGGGACTCTTTGTTGACTTGTGGTGTAGCACAACATATTTTATTTTTTTGGAGGCTTTTATGATGTCTTCTATTCATTCAACTTGTGTTTTTGTGGGAGTGGGGGACTACTACTCATCTTACAATATCCAGGATTGCTTTTTTCCTCTAATAATTGATTTTTCCAATGAAGTGTTTCTTGTTCTGACCTTCTCTTTTGTCTTGTCAGGTAAAAGGCGAAGCTAATATATCATACATATGTTCACGATTCTATCGTGCTCCAGAACTTATATTTGGTGCCACAGAGTATACAACTTCTATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTCTGGGCCAGGTTCATCTCATTGATTATTAATTATTATTACTAGAATAATATTATTATATGAATTTGAATTAGCTACTAAATGAAGTAAATGCAATACACCTATCTGTTATCTGAAACAATTTAAACTTTTGCAGCCATTATTCCCAGGAGAAAATGCAGTAGACCAGCTTGTACATATTATAAAGGTACAATTGGTGTCAACATGTATTTTATGTTCCTTGGTCATGCCTTCCTTGTTAGAAGTGATCTTTACAAAAATTGTTTTGTAGGTGCTTGGCACACCAACTCGAGAGGAAGTACGTTGCATGAATCCCAATTACAATGACTTTAGATTTCCACAGATAAAAGCACACCCATGGCACAAGGTCTATAATTTTATCTCCTTTCAGACAATTGTTTATTTTTAGATGAATAAAATGTAATTAATATGAGAAAGGCCTAGACATGCTAACACATCAAAATTGTGTAGATTTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTGGCATCTCGGCTTTTGCAATACTCTCCAAGTCTTCGGTGTAATGCGGTTAGTATGATTGCCTTTTTCTCCCCCTCTTTGTATATTCTACTTAATTCCTTGCTGCCACTATGTGCACCTGCCTATAATTCTTCTGAATTTGATTAATTAATGATTTTCGTTTTAGAAAACTCAATTGTCAATTTAAGAAGAATCTAATTTTGTTTTGTAGCTTGAAGCATGTGTACATCCTTTCTTTGATGAACTTCGAGAGCCCATTGCTCGCCTGCCAAATGGCCGTTCATTTCCTCCTCTATTTAACTTCAAACAGGAAGTAAGTCCTTAAAATATCCTTCTTGGTCTTACATGTGTTCTGGGAGCAAATTTTTTGTAGAGACAATTTCAAAGGAATAAATTGATACTATTTTTCAATCTGAAAATATGCATAATCCATAGATCCATTTTCTTAGCTTTATATACCTGTCTGGTTGTGTTGAGGTGTCTGTCTTTCCGTGTTTTGTCTGTTAGAGTACACAAAGCAATGCATTGAGAAATATATCTATATACAAACTGTTCCTCTCATTGACGTCCAAGCTAAACATCCTAAATGATGGACAACTATATTGTAATCCTTCTGTTTACAGTTAACCGGAGCATCTCCAGAGCTTATTAACAAGTTGATACCTGACCATGTGAAGCGGCAAATAGGGATACAATTTGTTCATCCAATAGGATCGTGA