Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23560	LG5	66566920	66568311	PREDICTED: piriformospora indica-insensitive protein 2-like	Map

Annotations

category		relationship type		keyword
Biological Process		involved in		cytokinesis, radial pattern formation, plant-type cell wall organization or biogenesis, carboxylic acid metabolic process, tissue development, carboxylic acid metabolic process, cytokinesis
Cellular Component		located in		plasma membrane, anchored component of membrane, anchored component of membrane

SNP	Position	Effect	Amino acid change
T/C	66567582	synonymous_variant	p.Leu221Leu
G/T	66567621	synonymous_variant	p.Ser234Ser
C/T	66567724	synonymous_variant	p.Leu269Leu
A/T	66567834	synonymous_variant	p.Ser305Ser
T/A	66567950	missense_variant	p.Leu344His
C/A	66567984	missense_variant	p.Asn355Lys
G/C	66567987	missense_variant	p.Met356Ile
T/C	66568202	missense_variant	p.Leu428Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23560.1

MASLSLLLVVFLLFGCVHGEEMVMEEELLGLFEVMDALLDDPDWAQAHPQPCTDTPWPGVGCEVSSDPPFFHVTKIHVGPDILFPPCKSSAYLSNSLLKLTYLKTLSIFNCFVASPVNLSSTLFGPFSTLEHLALQSNPALSGEIPPSLGGVTSLRVLSLSQNSFHGNIPREIGGLVSLEQLDLSYNNFSGEIPKEIGDLKSIAILDLSWNELEGNLPSSLGQLQVLRKMDLSSNRLTGKVPPDLGNMKGLVLLDLSHNFIGGPIPETLSNLKLLEYFLIDDNPIKSEIPHFLGNLCKLKSVSFSGCGLIGSIPNSFSSLTNLTALSLDNNSLSGPVPPNLGFLPNLDQLNISQNMLDGVLQLPDEFITKLGKRLDVRGNTELCIGDQTKKKNLSSYLEIPSCANTKPKNGKSFAEGPPENPAGIKPLFYQSNISSSSSRLDTQVMFVSLVLFFIHSFLKLFL*

CDS Sequence:
>Vu_23560.1

ATGGCCTCTCTGTCTCTTCTCCTTGTTGTGTTTCTTTTGTTTGGTTGCGTACATGGTGAAGAAATGGTAATGGAAGAGGAGTTGTTGGGTTTGTTTGAAGTGATGGATGCTCTTCTGGATGACCCTGACTGGGCCCAAGCACACCCTCAGCCATGTACTGACACCCCATGGCCTGGAGTTGGCTGTGAAGTTAGCAGTGACCCACCATTTTTTCATGTCACAAAGATCCACGTTGGTCCTGATATACTCTTCCCACCTTGCAAGTCTTCTGCTTACCTTTCTAACTCCTTGCTCAAACTCACTTATTTGAAAACACTTTCAATTTTTAACTGTTTTGTTGCTTCACCCGTCAATCTATCTTCAACTCTCTTTGGCCCTTTTTCTACCTTAGAACACCTGGCTTTGCAGTCTAATCCAGCACTCTCTGGAGAAATACCTCCAAGTTTGGGTGGTGTTACTAGTCTTAGAGTTCTGAGCCTGTCTCAGAACAGCTTCCATGGAAACATTCCAAGAGAGATTGGTGGTTTGGTGAGTTTGGAGCAACTTGACCTGAGTTATAATAACTTCAGTGGTGAAATCCCCAAGGAGATTGGAGATTTGAAAAGTATTGCCATTTTAGACCTCAGTTGGAATGAGCTTGAAGGGAACCTTCCTAGCTCACTTGGACAACTTCAAGTTCTTCGGAAGATGGATTTGAGCTCGAACAGGCTTACAGGAAAAGTACCTCCTGATTTGGGGAACATGAAGGGGTTAGTCTTGCTTGATCTGAGTCACAATTTTATTGGTGGGCCGATTCCTGAAACCCTGTCAAACTTGAAGCTTTTAGAATATTTTCTCATTGATGACAACCCCATCAAATCAGAGATACCCCACTTCTTAGGGAACCTTTGCAAGCTGAAGTCAGTGAGCTTCTCAGGATGTGGATTGATTGGCTCCATACCCAATTCCTTCTCATCTCTGACGAACCTTACAGCTCTCTCCCTTGATAACAACAGTCTCAGTGGACCAGTTCCTCCAAATCTAGGTTTCCTCCCTAACTTAGATCAACTCAACATCAGCCAGAACATGCTGGATGGAGTTCTTCAGCTCCCAGACGAGTTCATTACAAAACTTGGTAAAAGGTTGGATGTAAGAGGAAACACTGAACTTTGTATCGGTGATCAGACAAAGAAGAAGAATCTGTCTTCATATTTGGAAATCCCATCTTGTGCAAATACAAAGCCAAAAAATGGCAAATCTTTTGCTGAAGGACCACCAGAAAATCCAGCAGGTATCAAGCCATTATTCTACCAAAGCAACATAAGCTCAAGTTCATCACGGCTGGATACACAAGTCATGTTTGTTTCCTTGGTTTTATTTTTTATCCATAGTTTCCTGAAATTGTTCTTGTGA

Promoter Sequence:
>Vu_23560::LG5:66564920-66566920(+)

AAACGGATGTCGACATCCGTTTAAGGAAAAAAACGGATGTCAACATCCGTTTAAGGAAAAAACGGATGTCGACATCCGTTTTTTCCTTAAACGGATGTTGACATTCGTTTTTTTCCTTAAACGGATGTTGACATCCGTTCTTTCCTTAAACGGATGTTGACATCCGTTGAAGGATGTCACCGTTTAAAAGTTACGTTTTTTATTTTAGGGTTTTATTTGAAGGTTTATTCGAAAACACACCTTAAGGAAGCAACACACGCACTGCACCACTCCACACACTGCACCACGAGAGCGACACTGCATCACGAGAGCGACACTGCACCACGAGAGGGAGACTACTTGATAATTCTTTCCACTACCACCAACCTTTACAACTTGTAGTATCTCACCGCGACAAAAGAAAGAGATGAAGAAAAATAATGTTAAAATAAAAGAAAAATATTTTACTCATGTAGGAGGAACTAAAATAGGTTATTAGTGGAATAGGTTGTGAATGGGTAAAATTAAAAAAATTAACCCTAAAAATAAAATTTTATTTAAGGGCAAAATAGTAAAGGGGAGGTGGAGGAAGAAAGGTGTGGGGGTGGAGGGAGCAACACCCGAAAATGCGAGTCTCTGTAAAGTAATACCTTGAAAACCGCGACCCATGCATTTTCGGGCCTTAGTCTGTCATCATCGAAGCCCAAACAAAATACGAGCCTTTTCAAGATAATATTTCAATATTTTACATTAAAATAAATTTGTAGTAACTAATTTTCTTTAAACATTTTTAAAAATTACAAATAAAAGTATTCAGGAGATAAAAGTCTTAGTTTATTTAATTATGATAAAACCATGTATCTTCAAAAAATTAAAATATTATATATTGAGTAGTAAAGATTTTACTTTCTTATATAGGAACAAAATAAAAAATAGATTTAAAAAAAATGAAAAAAAATTATGTGACAATCTTTGTGAGTTGTAGTTTATGATATGTTTAAAGTTAAGTTAATTAAACTCAATTATTAAAATCTGAAGAAAATAAAAGATGTGAAGAGAATAGATGTGAGATACAAAAAGGACAATGAAAGTTACAGGCCCTCTTCATGGCTTGATTGGAAGGGGGAGTTGATATCCAAAGTATTCATTTAAGATTGAGTATTGATATTTAAAGTATAAGAGTAAATCTGTAGAAAAGAAAAAGAGAAAGAAAGAACTATGAGCATATATAGAATAAAAAGGAATAAAGAAAATCATGTTTAGTTGAAGCCAGATTTGGATGCCAAATACTCGAATATTAATGGTACACTGGTATCGGTGATACTGTACCACTAGTGATCAGACATAAGGGAATTTGTTTTAATTTGAAGTTAGAAACTTTGTTTCAGAATTTTAGTAATAAATAAAAGTGTTAAATTGGGTAAGTGTACAAGATGAAGAGGATCGGTAGTTCATAATCGTACACTGAGAAAAGGATAAAAAATAGCAGTTAACTGGGCAAAGAAAAAACTTTTATATTGTTTGGGTGGTTCAAAAACTGAAAAAGGTTTTGCCTTGCACAAGTTGATTGATTGAACAGATAAAGAATGTAGGTTATGAGTCTGAGTTGTTGTTCATCTCTCTTTACTTTACTTTTTTTGTTGCAGGCTTACAGAGTGGTGTCATTTTTATGCATTAACCATTAAACTGTTCTGGAAATGTATATTACCTTTTATAGCAATCGATTTGTCTTTCCCGTTCAATCCCTTTTCCATGTAAACTAACACTGTCATACTCACAAATGCAAATTTGGGAACCTAAGGGAGACAGCAAGTATTGGCTTTTTCTTTGCAGTCTTGGTTGCTGACACACAAAAAATGAGATCCCTAGAATCCCCTTTACGTTCTTCCCCTTTGCAATGAACACTATTCAAGTAACCTCATATAGAGGAAGTGCCTCTTTCATTTCATTTGCCTCCATTTTTTGTGTTTGTCTCTGCCTGCCCTTCTTCTAGTTCCCCTCACATCACATACAGTCTCAAA

Gene Sequence:

>Vu_23560(+)