Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23536	LG5	66326285	66327439	ethylene-responsive transcription factor LEP-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	66326628	missense_variant	p.Trp115Leu
T/C	66326713	synonymous_variant	p.Ala143Ala
G/A	66326966	missense_variant	p.Gly228Arg

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23536.1

MTYAKSPFPSPMMKSLSLKDLALLHPFHSHSLVCSLEVTLFKFSPPPQPTHIFLAIFQAMSTSRTSDVSLKGYQSKPTQMNFSLLQRNASTSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQARTNFVYSKDTNIFHNALTPFNSQPLLPPSHNTHNNMQLTNQTTLSHLPTFTSHIENPSSDLYADSETAFGSPQDDNFFFSTQSNSGYLECIVPGNCFKKSNASASGRDLEVGHVNSNSMQVQPHFDTTQEAFNMQATVAPDYADFSCPTDLGKGLWDNHQSWDCSSNELAAMFKNPSRVVEEGCMDALHPFTDSSNYELMTQVVSSNTYSPSVPPFGNVGSAYSPF*

CDS Sequence:
>Vu_23536.1

ATGACATATGCAAAATCTCCTTTTCCTTCTCCCATGATGAAGTCACTGTCTTTAAAAGACTTGGCATTACTTCACCCTTTTCATTCACATTCTCTTGTTTGCTCCCTTGAGGTGACACTATTTAAATTCTCTCCCCCTCCTCAACCAACACATATATTTCTTGCCATTTTCCAAGCCATGTCGACCTCTAGAACCTCAGATGTTTCCCTCAAAGGATATCAGTCTAAACCAACCCAAATGAATTTCTCTCTTCTTCAACGTAACGCATCAACTTCTGGTGAGAGAAGAGGGCGAGGAAAGCAAGCAGAACCTGGAAGGTTTCTTGGGGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCCGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCGTATACTCTAAAGATACCAACATTTTCCACAATGCTCTCACTCCTTTCAATTCTCAACCTCTCTTGCCACCTTCACATAACACTCACAACAACATGCAACTAACCAATCAAACTACCCTATCTCACCTTCCTACTTTCACTTCCCACATTGAAAACCCTTCTTCTGACTTATATGCTGACAGTGAAACTGCTTTTGGGTCACCTCAGGATGATAATTTCTTCTTCTCCACTCAGTCTAACTCTGGCTACCTTGAATGCATAGTTCCCGGTAACTGTTTCAAGAAGAGCAATGCCAGTGCTTCAGGTCGTGACCTAGAGGTTGGCCACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTCAACATGCAAGCAACAGTCGCCCCTGACTATGCAGATTTTTCTTGCCCAACTGATCTTGGTAAAGGATTATGGGATAATCATCAATCATGGGATTGCAGTTCCAATGAACTGGCAGCTATGTTTAAAAATCCATCAAGGGTTGTTGAGGAAGGGTGCATGGATGCGTTGCATCCATTCACTGATAGCTCAAACTATGAGCTAATGACTCAGGTTGTTTCTTCAAACACATATTCTCCATCAGTTCCTCCCTTTGGGAATGTTGGCTCGGCATACTCACCCTTCTGA

Promoter Sequence:
>Vu_23536::LG5:66324285-66326285(+)

CATTTGGAACTGTAAAACACTGTTAAACTAGTCCCTGAACTGATAAAGTTCACATAAGTCCACGAAAGTGCAACTTATTAATCACATTACTTACTGCGTAGTAATAGTGATATATATATTTTGGGAAATCAGAAGGGCAGTAACTGGTGAAAATTAGGGACATGGATGAAACAACTTCAAAGTTCATATATTCTTATTTGAATTTTTCTTATTTTGAATGACTAATATGACCTTACTATGTACTTTCACAAATCAAATGGTGGGGTTTACTCGAAAACTGTAAATGAACATTCTAGAATGCAATATCTGATTTGTGCTTGAAAGATCCAAGACACAAACATAGAAATAAAGTTAATCGAAAGGGAACTCTGCTACAAAATGCATATGTTTTTGGCATGAAAGAAGTATTTACAAGAAAATCTGATATTTTATATTGAGTGGTTTCGGTAATTTGACACTCATTCCTTTGCCAACTTAACTTCATTATTGAGGCATGTGAACTACTAACATCGGTTCTGCCTAACATATAAACCATTCATGACACATCAGTATTGAAAATTCTACCCTTGAAAGATGAAATAACAAACAAAATTAAGAATTTAACATGTGGGCCTTTCATAAGACAACCTTTTCTAGAGTGTCGTTGGTTCAATGACAATACAGGGAAGACACAACAAACTATCAAATTATTGAATAATGTTCATCCTGGTCAGATAATTTTAACTGCTCCCTTTGAAAACTATGAAGCAAACAAGAGTTCACTGTATAATTGGTTGATTATTATGCATAACAAGGTTTCACATGTGTGTATTACATGCAACTTGTGAACAGCTTGCTAAGATATGGTGACTCCAAATTCAAAGATTGGAGACTCTCAAGGAGTATGCAGACAAATAATGCAGTTGCTTTCATTTTCTGTTCTGCCCCGGAATATATCAGTCATCCAGTAAAGTTCTCTATAAATCCCACTAGCTGAAACATATAGTTTGTGATCTTATGATAGATTTTTTTGTAGTTCATATATATATATATATATATCAAATATCATAAGTTATAATAGGGTCAAGCCTTTTTCTTCTGAGGCGTACGTGTATTAGTTTTTCAATATTGTCTCTGCTGGAAAAAGAACAAAATAGGAGTAAATCATCAATTTCTTTCTTAAATTATTACATTTCTCTTTAATGATCCTAAAGTAAAAGGCACTACTTAATTAGTTATCAAAGTAACAAAAATCATGTTAAATAATCTTCTAACTAATAGAAATCCTCCACATGGGTCCTTTAACTGTATTGAAATACTTCAACTTAGGAACTTAAAATGATGAATATTCCATACTTCAGAGATAGTTTCAATAACTTTAAAGACTATGCTTAGGAGAGAATAACACCTTTTATGAGAGAAATGGTGGTTTATTCAACACAATAGATTTCAGCTGGAAGAATTTCATGATTAGTCTGGCCTTTACACATGAACTGATACAAATAAGGATTCAATTTTGCCAATGCTAATCAAATGCCAATACCTTGCATGGACCAGATGCAATAATTGGCTCACTAAACTTTACATTGTTCACCAAGTTGGAAAGCTAAGGTAGATCTATTTTTTAACTTACCACGGTAAATCGGTTCCTATGCTTATTACTAAGATACGGCAAAACCCATTTTAAATATCATTGGAACAATGAAGAAAATGATTGTTGCAGATTGTAGAGAGTATTTGGCAAAAAAAGGGAATCTTTATTTTCACCATTCAGTTTAACCAAGAAGTACACTACTAGATGATGGAATGCAGAGCCAGAGATTTAAAAGAAACTGGCATCAGTCCCGTGCAAAACCACAGGAAAAGAGAAAACCAACATAAACAAAAATGTCATTGGTAGAAAAGGAAAAAAGTTGATTAAAAAATGACATGTGACAGAAAATTGGACAGATTTATGATATACTGAGATAATAACAAGATTTTATAGGTAGGTGAAAAGGGGAAAACGGTTTGCATAAAAA

Gene Sequence:

>Vu_23536(+)