Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23480	LG5	65816571	65818853	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, zinc ion binding

SNP	Position	Effect	Amino acid change
A/G	65817033	downstream_gene_variant
A/T	65817102	downstream_gene_variant
T/C	65817124	downstream_gene_variant
A/G	65817156	downstream_gene_variant
T/C	65817204	downstream_gene_variant
A/G	65817207	downstream_gene_variant
G/T	65817495	downstream_gene_variant
C/A	65818080	missense_variant	p.Trp258Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23480.1

MIVKEHFVGTELAMTNAIVEEDIDFSCDPYIGLEFDTADEALKFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGRQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNLEISGENCTPTLEQKGDTVVNSLTEFTRRPRKKLLEEANNDSSCPFGIIDFKRLRKEELEGQPKTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPTGKWTVDRLRKDHNHDLDSEKESRVKDIHSSNILNDDADTGFVNGDLFRIDNYPVPRGGRQNHIRKVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR*

CDS Sequence:
>Vu_23480.1

Promoter Sequence:
>Vu_23480::LG5:65818853-65820853(-)

ATGTAATATCCCTCCACTGCAACAACATTTTGCATCATATTGCAAGTAATTTAAATGTTAAATTAAAGTAAAAAATTGCTTCAAGTTCAATTTGTGTTGGAGATTCTTCGTGGATTCCAGACAAAGTTAAATTACAATAAATATAAATGAAGAAAAAATGAATTAAAGAAAGAAATCAGATCATATATATATATATTTTAAAATTTTTGTTTCAAGTTCTATAAAAATTAATTTAAGTTCATAAAAAAAATATTTTATTTACTTTTTTTATGTTTCATGTGTTTATATTACAAGAAAAATGACATATACCTACAAATAAACAAAATCTGTGGATAAACGTAAAAATAGACTTTGACGGTAAAAATATTAACTTGTACTAATATATTAATTATGAATAAAAGTCAAAACAACTATATGGTAAAAATAATCAAATTATGTTTACATCCTCTAACAACAGTAGAAAATAATCCTTTGTTACTAAAATTTGTCAAAATAAAAAAAAAATATAATTAAAGGAAGAGTTAGTATAAAAACTCATACGAACACAGTTTATGAACCAAGTAATCTCCAACTATTCATATACAATAAAAAATATATTTCTTATTTTTTTAATACATGTTTAAAATTTCACAAGTTCATAGGTGAAAACAACTGTATATATTACAATTTTGTTAACCAATAAAGTATTGTTAGGTAAAAGTTTTTTTTTAGTCTAATTTTATATATGTCAAGAGATTTTAGCTACACCGAATATATGAAGGTACAAGTATTTTTGAGTTTTATCTATAGTAAGATATACTCATGAGTACAATCGTTTGTATGTATAAGTTCTTTTAATATAATATATATATATATATATAAATGAAAATATTTCTAGGACTATTATGTTTAATTAATATTACATTGAACTATTGAAAATTTTGGATTTTATAAGAAGGAAAAAACATGAGAAGTGATTATTATAAAATGCAAGTTTCATCTGTTAAAAGCAGCATAATTTTTTTTAAGACCTTAAAATTGCAAGGTTTAATTATTCCTTTTCTTTTTCTTGTCAGGATAGTTATTCGGTCTTTTATAAATTAAAAGTTATATCGAATTTGAAGAGAAAATGAATTAAAATATATCATATTTTAAATTAATTTATTTTTTAAAATAAAGTTTTCGAGAGAAATAAAAAAAAAATTGTGTTTTTATGTTCTGGAAAATAACGCCAAATGTTGTAGTGTGTGGCTTACCCGATTCTGAAGTAGATACCCACAAACACCACGATCGGATTCGGGTATGGATTCGGATCCTCTTTAAATCCAATTCTGCACTGCCATTGCAACACCGAACCGAACACAAAGTGAAGAAGAAACGGGAACATGATCCCAGTTTACTCTATCTTCTCCTTCTAAATTGCTTATTTCCTCTGATTCTGCACTTCCCACAGTCCTCCAATTTCAAAGTTTTCCCTTATCTTCCAATCCATTCGTCAATGTTCAAGGTAAATTTTGTTTCTGAAACCCTAACCTCTTTATTTATTTCTAGCTGCGTTGACTTTCGTCGTTGTCTCATGATTTCGTTCGAAACTTCAATTTACTCCGATAGTACTCGTTACTCCTAATATTCATTCCTGTGATTGTCTTCATTCGTTTTATTTTTATTTACTTTTTGTCTAGATTATGATATTTCTGTTGACAGATTGTTTGGTCACTGAGAAAATGGAGAAACGAGTTACGCACCTGAAGAATTAGGATAGGGACGAATAAAGCTGTGTTGAAGTTTGTCTCTTATACAAGTGCGTTTATTTCGGTTTTTACAGAAATAGTTGCCTTGAACATAGCTTATGGGACTGGAATGTGCTTCTGCTTGACTAGTAAGAGGGAGGTTGAAGAAAAGAAAAGTTAATGCATAACTTCCTTAAAGTTTAAAAGCGTTTGAATGCTACTGTTATTGCCTTGAATTTTTCTCCATTACCATGTTGGTAGTTATATTTTAATGGACAAGAAGTTGGGATC

Gene Sequence:

>Vu_23480(-)

ATGATTGTAAAGGAGCATTTTGTTGGTACTGAGCTTGCAATGACTAATGCTATTGTGGAGGAGGATATAGACTTTTCTTGTGATCCGTACATAGGGTTGGAATTTGACACAGCAGATGAAGCACTAAAGTTCTACACTTCATATGCAAATCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGATCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACGTCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCCGGAAAGTGGGTGATTGATCATTTTCATAAGGACCATAATCACAATCTTGAAATCAGTGGGGAAAACTGTACTCCAACATTGGAACAGAAAGGTGATACAGTTGTGAACTCTCTTACTGAGTTTACTAGGAGGCCAAGGAAGAAATTGCTGGAAGAAGCCAATAATGATTCCTCTTGTCCCTTTGGCATTATTGATTTCAAACGTCTGAGAAAGGAAGAACTTGAAGGACAGCCCAAGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCCAAGAATGATGGATTGATTACATCCCGCCGATTTGTTTGCTCCAAGGAGGGGTTCCAGCATCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGACAGGAAAGTGGACAGTGGACCGCCTCCGAAAGGATCATAACCATGATCTGGACTCTGAAAAAGAGAGCAGGGTAAAAGATATTCATTCTTCTAATATTCTGAATGACGATGCAGATACTGGATTTGTGAATGGTGACTTGTTTAGAATCGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTACAACGTTCTTTTAGAGTATTTTCAAACAAGACAGACAGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGACAATGGTAATTGTATGAGCATATTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGCCTTAGACACATCATACCGAAAAACTGTCTATTTGGTGCCTTTTGCTACTTTTGTTGGGGTCAATCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCCGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCTGATCAAGATATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGGTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTTACAAAAGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAGGACAATACTTGGCTAAAAGAGATGTATGAGAAGCGTGCATCTTGGGTTCCGTTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCTTGGAGTTCATTCCTCGGTACGAAAGGGGTCTTGAGCGACGCCGTGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTGGAAGAACAATGCAGAAGGCTTTACACTCTTGCTGTATTTAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTCGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGAAGGTGTGGAAATGATATGGAGAAACATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAGCATGATGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTACATCGGTGGACAAGAAATGCTGAGGATGGTGTCTTTCCTGACATAGAATCGTGGAGCAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATCGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA