Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23406	LG5	65036965	65039726	PREDICTED: probable transcription factor KAN4	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	biological_process
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/T	65037397	missense_variant	p.Cys201Ser
A/C	65037496	upstream_gene_variant
G/A	65037499	upstream_gene_variant
G/A	65037645	upstream_gene_variant
G/A	65037672	upstream_gene_variant
T/C	65037675	upstream_gene_variant
T/A	65037871	upstream_gene_variant
A/G	65037951	upstream_gene_variant
C/T	65038072	upstream_gene_variant
A/T	65038091	upstream_gene_variant
G/A	65038100	upstream_gene_variant
A/T	65038105	upstream_gene_variant
C/A	65038374	missense_variant&splice_region_variant	p.Gly137Val
T/A	65038612	upstream_gene_variant
C/A	65038699	upstream_gene_variant
A/G	65038721	upstream_gene_variant
A/G	65038784	upstream_gene_variant
C/T	65038787	upstream_gene_variant
G/A	65038816	upstream_gene_variant
C/A,*	65038855	stop_gained	p.Glu136*
G/C	65038857	missense_variant	p.Thr135Ser
C/T	65038859	missense_variant	p.Met134Ile
A/T	65038914	upstream_gene_variant
T/C	65038920	upstream_gene_variant
C/T	65038925	upstream_gene_variant
T/C	65038973	upstream_gene_variant
C/A	65039078	upstream_gene_variant
A/G	65039308	upstream_gene_variant
T/A	65039323	upstream_gene_variant
C/T	65039333	upstream_gene_variant
A/C	65039401	upstream_gene_variant
C/G	65039442	synonymous_variant	p.Leu95Leu
G/T	65039566	missense_variant	p.Ser54Tyr
G/A	65039606	missense_variant	p.His41Tyr
A/T	65039649	synonymous_variant	p.Ser26Ser
G/A	65039674	missense_variant	p.Pro18Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23406.1

MKPQAAESDLSSLKRSPPSTMSSSSSSLVTTLVDHANNPSHPPPPRPPRRRFVSHHLPEISLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMKQEQMTEGAKKNDVAPEFVASTFSTLGPRYTQQNPPQRTCTEQLLPTRAQWNDCKEGCYSGKHGGKSINEEKMQPYIIFEGVLSGQTVQENKFGPEKVSLWGATGYESDRERFQDRTTIAIGGGGGGERMRESSLSLSMTSRATSHSFFNRSHSGPDANDVSLELTLS*

CDS Sequence:
>Vu_23406.1

Promoter Sequence:
>Vu_23406::LG5:65039726-65041726(-)

GAGTGGTCTTAGTCTCAGGTAGAAACAAACTCAGTTTATTTGAGTTCAAGCATTTTGGCATCACGTGAAGAAACTTCCATGCACACTAATGGCTACCAACTCCTCCTTAACTAGGTGTAAGAGGAAACTCCATCATGCGAAGCATGTCTACGTGGCAACACCTGTCTTCATTTTGTTGGTTTGGCTTTATGACAGAGACGGATGGTTATGACCATTCTAACGTTGTTGATTTCTCTGGGACATTCATTGTTGCTTATGTCATACACTACCACTTTCTCTTAACTTCAATTCGATTCTTCTTTCTGAGTTAGCCAGCTATTCTCCACGTAAATTATTTCCCGGCTAAAATCATTTTGACTTCAACAGTCTTTTTCTCACTTCAAGTAAATTACTTTTATTGCCATTTACTACCGCAATTACTAATTATTATAATTAACTGAAGAAAACGTAATTATGTCCAGTAACATTGAAAAAAAATACATTCATAAATGTTGGTAACACGTGATCTAACGTTAGTTCTTTTAATAACTTTATAGTTCATTAAATTTTATTCAAAATCATAAAATTGTATCACTCCTTATTTAATGAATTTCATTAATGACTTTTTCTAGTTTAAGTTTCAACTAATAAAAAAATGGGGTAATCATACTTGACTTTTGAAATATGTGTGAAAAGGGACACAAAGTAAAAAAAAGAAGAGTAGTTGGTAAATATAACAGTTGTGATAAAAAGTAAAGAAAGATTTGAGATTAAGAGAATTTGAGTGTGTTTAGTATCATATTTTTATTACTTGATTAAAATGTAAATGTAGAAAATAAAAAAATAATATTTTGACACATTTAAATTTTTTACATTCATTATTTATTTAAAAATATAAAAATTTATATTTTTATAACCATTTTATTTTTATATTCTGTGTCAAATGAATGTAAAAGTATGTTATAATATCATTACTCAAAAAGATATCATCTCAGTGATGAACGAGACAACTCCAATTATTATCAATGCAAAATAATTGTTACATTAATGTGTATTTATTACAACATTTATTATACGTGATGTATTAATTATTTAAGTGTCGATCAATATAACTTTACAAACTTCCTAACTGGAAACTCCTTGTTTCAAATCGAGTATGTATAACTCGTACGCTTGTGTACGAAAACATCTTGACTTGAACCAAGGATACAAAGTAATGAACACAAACATATTTTAGTCACAAAAACAACTTCATTAGAATATAAATGTAGAAAAATATTACAGGAAGAATTGTTACACCCTTTAAAATGATTAAATTTGTAATAACTACTTTAAATTTAAGTCAAGTAACATTAATTTTTAGACTGATATACAGAACATAAAAATTAATTCTTTGAAAAATGATAAAGTGACACACATACTATATAACGGTAAAATGGTAATAAATAAGTAAAATTTATATTTTTTGAAAAAAAGAAAATAATAAAAATAACAAAGGATATTATCAAATTAAAGTAAAAATGATGTGGCAAAGTAATAGTATTGTTAACTCTTTTTCACTGTAAAGTATATTTCTATAGCTTTGTCTTGACCTCTGATAATACAGTACAATTTACATAGGTACGTGTAGTTCCTGAATTGTATTTATAATAATAAAGAAGTATGTAGGTGATTCTTTTCCTTAAGAGACAAAGAATGTCTGGAAAAGACCGAAGGGAATGTCTAAAGAAAATGATATCACAATGCAAGGCCCTTTCACTTTTTAACCTTTCATTTTCACCCAATCATGAAGGCATTTTTGAACAATTTGGGGTTTCTGAGTTTCCGTGTCTCAAGTTTTCCTTTTATCCATCGAACCTCTCTAGGACTAAACTGACCCTTCCAAGAGGGGTAACAAAACCTGCACTAAAGGACAACCCTTTCTGCCACACACTCTTGCTTAGTATTTATTCTCTTTTGTTTCTTCACAGACCACCACCCTTTCTTCCTCTCCTCTCTTCCCTCTACCTCAACACAATTCA

Gene Sequence:

>Vu_23406(-)

ATGAAGCCTCAAGCTGCTGAGAGCGATCTCAGTTCTCTCAAACGCTCCCCACCTTCAACCATGTCGTCTTCTTCCTCTTCTCTCGTCACCACCCTTGTTGATCATGCTAATAACCCTTCACACCCTCCTCCGCCAAGACCTCCTCGCCGTCGTTTTGTTTCTCATCACCTTCCTGAGATAAGCCTCAAAACTCCTATGGTTAGGCCTTATGTTCGATCAAAAATGCCCAGGCTTCGTTGGACACCAGATCTCCATCGCTGCTTCGTGCATGCAGTTCAGAGACTGGGAGGAGAAGACAGTAAGCTTCTTATACATATCTTTTTTGTTTTTCACGTACCCTTTTGGAGTCACAATCAGGTTGGTCACCGGAGGTGAACACTTTTCTTAACCAAGGTTATCTCGTAAAAAGATCAGTCTCTTTACGCAACTCTCGTGTTCTATTTATATATGTTAAAGTCTTATTTTTGTCAAAGAAAAGGCTGAATTTTTTATCCGTATGTTTCATTGGTGAAGCTTTAGTTTTGAGTGGTGTCGATTTGGATTTACAGGGGCCACACCAAAGTTGGTCTTACAGCTCATGAATGTAAAGGGGCTTACCATATCTCATGTCAAAAGCCACCTTCAGGTTACTCTTTTCTCCACAACCACGAATAAAGTCATGGGGGAAAAAGGCGTTATGTTATGAGTTCACTTCCTGGTTTCTCTTTCTTATTTAATTTATCTATTTATTTAATTTATCTATTTTGAAATGATAAAACAATTTCCTGATAAAGAATGCAACTCCTTCATAATTTATTGTTCGTGTTAAAGTTTCAAAATGGTTGTGTATTGATGACAGATGTACAGGAGCATGAAGCAGGAGCAGATGACTGAAGGTATATAATTGTACTGTGCATCAGTTACTTATGAGCAAGTTCTCGTGTCACAGATGTATGCATCGTGTATAAGGAAGATATAGATAGGTGTAGACTACGTTAGACATTTTGTTTGGTTCAATAGAGGAAATTAGATCTATAAACACTGAAAAGAATATATAAATATATACATATATTTACCAGAGAAAATAAAGGAACCAACCAGGGGTTGTGGACCCTTTTCCGTCACAAAGAAGACGAAAGTAACGTCAAATATTCTTCAGGATTTTGTTCCAACAAAATTAACTTTTAATGTTGGGTACTGTTGCACATTTTTTTCATGAGATCATTTACCGACGTTGAAAATTATTCAAATGAATTATACTGTATCGTTTTATTACATATTAATAATTAATAATACTTGTTAATTATAACGTTTTCTTAACCCCCACTAGAATTTATAATTAATTATTATTTATTAATTTTTTTGTAATAGGTGCAAAGAAGAATGATGTGGCTCCGGAGTTTGTAGCCTCCACATTCTCAACTCTTGGCCCAAGATACACCCAACAGAATCCTCCCCAAAGAACCTGCACGGAACAGCTTCTTCCCACCCGTGCTCAATGGTATTTCTTGTTCCATTTACTTTTCTTTGGAAAATATTTTTTACACTAGATTTTTTAAATTATGAAACATATAGGATATATATTTTACATAAGGCATAATTAGTAAAAAAATATAGTTGGATAGAAAATCAGCATCACATGTTTTTCTTTTATGTTACATGTCTTTATGTACATGTGGTCTGTGTGTGTCAGTATCATATCATGTGTGTTTATTTTGTATTATTTTTAAAAGTAGTGAAAAAATAAAGCATTGGTATATTTTTTGGATTAAGATATTAATAAAGAAACGACTTTATAAAATACACCTGTAACACTTGTTTTTAAATGTTTATTTGTCAACATTTTAACAAAATTACGCCAATAAAACTATTTTAAATTAAGACATTTTTAATTACATTATATCATATACAATGCCTAAAAAAGTGAACTTCTGTTTAACAGATAATTTAAAACCTGCAACAATCTAATTATACAGTTCACAGAAAAATAGAAACTCCTCCAGCCAAATTAACTATATCATAAAATTGTTTAACTTATAAAGAAAAGCTGCATTTCTCCAATTTTGTTAACTAAGCGAGCAAAGAAAGGTAAAAACATCATTCCATATCCAATTTATAGGAGTAGAATTAGGAAAATGTGACATGCCGGTCTGATTGAGAAAGATGGAACAATTAATTTGATGGTTAAGACTTAAATTTCATCCTGAAATTTGTGTGTGAAAAGATATTAATTAGTTTCTCCATTGGGCTGTGAGATGAGTAATTTGTTTTGTTATGGCATGCAGGAATGATTGTAAGGAAGGGTGTTACAGTGGAAAGCATGGGGGTAAATCGATTAATGAAGAGAAGATGCAGCCCTACATCATCTTCGAGGGTGTTCTGAGTGGCCAGACTGTCCAAGTAAGTAACTCCTTCTTCTCATCAGTGTCTCGTTGATTTTCTGGCTGCCCCCACGCACACATACATGATACACAATACTAATGCAACAAAACTTAATTATTATACAATGCTGAATGAACAGTTTATTCCATTTTGTTTTTCAGGAGAATAAATTTGGTCCTGAAAAGGTGTCACTATGGGGTGCCACCGGATACGAAAGCGACCGTGAAAGATTCCAAGACAGAACTACTATTGCCATAGGAGGAGGAGGAGGAGGAGAGAGAATGCGTGAGAGCTCACTGTCCTTATCAATGACCTCCAGGGCTACTTCCCATTCATTCTTCAATCGCAGCCACTCCGGTCCAGATGCTAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG