Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23312	LG5	64241030	64242913	PREDICTED: trihelix transcription factor GT-2 isoform X1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/C	64241051	missense_variant	p.Pro323Arg
T/A	64241174	stop_lost	p.Ter282Leuext*?
C/T	64241273	missense_variant	p.Arg249Lys
G/T	64241503	synonymous_variant	p.Pro172Pro
A/T	64242032	upstream_gene_variant
C/T	64242189	upstream_gene_variant
T/C	64242453	upstream_gene_variant
T/A	64242475	upstream_gene_variant
G/A	64242650	upstream_gene_variant
G/A	64242738	missense_variant	p.Pro59Leu
G/T	64242743	synonymous_variant	p.Pro57Pro
G/A	64242748	missense_variant	p.Pro56Ser
G/A	64242757	missense_variant	p.His53Tyr
G/T	64242814	missense_variant	p.Arg34Ser
G/A	64242869	synonymous_variant	p.Val15Val
C/T	64242871	missense_variant	p.Val15Ile
C/T	64242877	missense_variant	p.Asp13Asn
A/G	64242912	start_lost	p.Met1?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23312.1

MDLFAADHFPVPDHVAPFPDSGDLLFPADLLSHRHNPQKLRPIRSLPSALNAHPRPPDPIASGSGHTPSQESDSALDAEDEEENDDNSSASPEGNGPRKRRRKTVRKLEGFVKNLVTKVMEKQEQMHKQLVEIIEKKERERIKREEAWKNEEMERIRKEEEARAEEKSRSLALISFIQNLLGHEIQIPQAVEACSKREEGEVEVNAHKEFNSDHSKSRWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKRRQNSKSCPYFDELDILYRNGLLSIGNALSNTTDAPQIEQKE*

CDS Sequence:
>Vu_23312.1

Promoter Sequence:
>Vu_23312::LG5:64242913-64244913(-)

TACGAGTGAATTTTCAATCCGGCTCACTTAGAACCTCTTCACTTGGGTTGAATTGTGAGCCATAATTTATTATTTTGTGTTTCAATATCATTAGTTAACACTTATTATTCTATATTCTATTATAGATGGAGATAAAGATGTTTCAAGAAAACAAAATATTATGAATTTATTCATCTAAGACTCTAATATTATGAATGGATAAGTGACACTAAAAAAATCCATATTAAAAATTTATTTGTTCGTTTTTTGTAGTATTGTATGATACTTTTTTTAGTTTAATATCATTTTAGTGTGAAATTTATTTATATTTGAATTACAAAATTTGTAATTTTTCTTAAATTTGAAAAAAAAAATCTTATAATTAAATGAGTTAGTGAATTATCCCGTTTAACCCACCAATCCATTGTGAGCTGGATTATATTCAAATTTTTATGTACTTGCTAATAAATAAGTTAGATTGAGTTGATTTACTAAGTGATCAACCTGTGATGGGTCATATCGAATCAAATTGAGTTACCTGTTTTGACAACACTGCTCTGGAGTATGTTTGCATATATTTTGTAAGAAAATTATTTTAATAATAAATTAATTAATTTGACTTTTTTCAAAAAAAAAATTAAATGGTTTAGTGTTTTATTTAATATATATTATTTTATATTTCTTTTCATGATAGTTAAAATTTATTTTTAATTTGTGAAGTATAATTTTTTTTATAATAAGTTTCGTGTGTTCTTCTTTTGTTTTCATTTTTTTATTTTAGTAAAGTTTCATGTGTATGTCTTCATTTTTGTAACAATATGAATGCAATGAAGCCGATGAAGATGATAAAATTGGTAATGTTGACGTAAATGAATAGTATAATGGTGTGGAGGTTGCAGAGTTTAGATTAGTGGTGTGTGAAGGGAAGAAAGAAGAAGATAAAAGGAAGGTGTAGGAAAGGAAACAGAGATGAAGTGGACACGAAGGAAAACGAGACGAAAAATGAAAAAAAGAAAAACAAAATAAATAAAAATTCAAGATGCTAGTAAATAAACCAAATAGATTGCAAGATTATAAACAAAAGCAGAACGTAATTAAGAAAAAGAAACATTAAAAAGCAATTTAATATTTGCCAAAGTAATAATTACTTGTTTTATATGAATCTGAACCTAACATCCATTTGTATGTAACTATGAGCTTGTGATTCAACCTCTAAAATAATTTCTATAAGCACTTCTTCCACAACTACATAAACGTAGCGAAAACTTTGTAATCAATTTTTTGATATAATTTTATTGTGAACGCATATGGTAAAATTATGGAGTTATAACACAACCTTATTCAGCAAAAAATCGGTTAATTTTTCACATTTAATATCCAATTATATCTTGAATTACTTTCTGTATACAATAAAATAGGTAAGATAAAAAAGGAAAAAACTCAGTTTAGTATGATGAAAACCTATCATTTTCCATTAATGAAGAGTTTTACGGGGATAACAAATAAAGGACCCCAATTTACAAAGCAGTCTTATTTTAAAATAGGCTAATTTTTTAAACTACAAGGCCAAATAGAAATATCTTTAGCCGACATCTTTCTACCGACACAAGATTTGAAATTCAACTGAAGTCTCCGGTTTTTACTATAATCCAAATATATAAACTGTGCACTAAATATTTAACTAGCAGTGAAAATATTATTATAATCTTTTTCTTCAACAAGCATGCTTTTATTTCAATTAAAAAGGACAAGAAGTGGAATGTGTGTCTTGCATTATTTAATTCTCATCGGTGAATCAGACATTAGACGTAGCTAAAATAAGACAACATTTTGGGCACATTAGAAGTTACAACATGGGCATGTGGTTCATTTCACTTCTTCTTAGTTATATTCTAATTTACCAACAGAGTAACGCAGTAGTCATTTTACTTACCAACGAATAACCATTCTCCTTCACTTTTCACCTCTTCTCAAAACCCTCGCGCCGCTATTTTTTTCCCTTTTTTTTTTTTTACCATTTT

Gene Sequence:

>Vu_23312(-)

ATGGACCTCTTCGCCGCCGATCACTTCCCCGTCCCCGACCACGTCGCTCCATTTCCCGATTCCGGCGACCTTCTATTCCCTGCCGACCTCCTCTCCCACCGCCACAACCCCCAGAAGCTCCGCCCCATCCGGTCCCTTCCCTCCGCTCTCAATGCCCACCCTCGTCCGCCCGATCCGATTGCCTCCGGGTCGGGTCACACCCCGAGCCAAGAATCTGAGTGAGTCCGTTTCTCTTCTCCCATCTCCACCTCTGCTTTTCTCCTCTTTTTTTTTATCTAATCAATTATTAAAAGATCCCCTTTTCTCTCTTCCGTTATTTTTAATTATTAATTCGATTTGAATTTGTGTGTCTTTATCTTTTATTTTTATGCTTATATTATATCCTGTCTTTGCTGAATGGGGGCGGAACGTACAACCAATAAAGTGATTTCCTTTTCTATTATTTTAGTTAATTGAAAAAAGATTGTGATTGGCGGTGGTTGCAGAGTGTGTTGCTTTTTTTTTATGAGTGTTTGCGATGAGGTGTTAGGCACGAACTTGTTCTCAGAATATGTTGCATTGCAGTGTTGTCCATTTGATGCTATGAGCTCTGTGTTGCGTCTTTATGAGAGAGAAAGAGACTGAGCCCACAACTTGGTACTACTATACATCATTCTTTTCTGATTCGAGAATGCTTTGGTTTGTAGCAGTGTGCTTTTGGTGGATGAAAAGAAATGCATTGTACGGTGTATTATTATTTTTATAGTTGGGTCAAGAGTTATGTTTTATCTGCACACAAGTATTTCTAGTATATAGAATGTTCTGTGTGGTAATTGAAAAACAAGGTCTTGTTGGAATGAAACCATTTTCCCGAATGATTTAGCAACCCCAACTATTGATAATTTGTTACCCTTTATTTACTAACGCGAGGTGAGTCTGGTGAAAGGGTTAATCTTTTGTTACATGAAAAATCAAGGTTCAGAATTTTACCAAAAGAGGTGTGTTTCATTTAGTACCCGAGAGTGTTTCGAACAAGATTCACTCTGACACATGTGTGAAATCAAAACAGTCTTTCTTGACAGGTTTAAGATTGGTTTGGACTGCTCTTTTTGATTTGTTCTTCCTTGTTTCAGCTCGGCTTTGGATGCGGAGGATGAAGAGGAGAATGATGACAATTCATCAGCAAGCCCTGAAGGAAATGGCCCTAGAAAGAGGAGAAGAAAGACGGTGAGAAAGCTTGAAGGTTTTGTGAAGAATTTGGTGACAAAGGTGATGGAGAAGCAGGAACAGATGCACAAACAGTTGGTGGAAATCATAGAAAAGAAGGAAAGGGAAAGGATAAAGAGAGAAGAAGCTTGGAAGAATGAGGAGATGGAGAGAATTAGAAAAGAGGAAGAGGCTAGAGCTGAAGAAAAGTCTCGCAGTTTGGCCCTCATATCCTTCATTCAGAATCTGTTGGGCCACGAAATTCAAATCCCCCAAGCAGTAGAAGCATGCAGCAAAAGAGAAGAGGGTGAAGTTGAAGTGAATGCTCATAAAGAATTTAATAGTGATCATAGTAAGAGTAGATGGCCAGATGTTGAAGTGCAATCACTTATCACAGTGAGAACTTCATTGGAGCACAAGTTCCGTTTCATGGGATCGAAAGGGTCAATTTGGGAGGAGATATCTGAAGCAATGTATGCATTGGGCTATAATCGGTCTGCAAAGAAGTGTAAGGAGAAGTGGGAAAACATCAACAAATACTATAAAAGGACAATAGGGAGTGGCAAGAAGAGGCGTCAAAATAGTAAAAGCTGCCCTTATTTTGATGAGTTGGACATTCTGTATAGAAACGGCCTCCTAAGTATTGGAAATGCCTTGAGCAATACCACTGATGCTCCCCAGATTGAACAAAAGGAGTAG