Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23240 LG5 63659546 63661549 Protein FAR1-RELATED SEQUENCE 6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   zinc ion binding
SNP Position Effect Amino acid change
A/T 63659584 missense_variant p.Ile404Asn
C/T 63659825 missense_variant p.Ala324Thr
C/A 63659978 stop_gained p.Gly273*
T/C 63660241 upstream_gene_variant
T/A 63660243 upstream_gene_variant
A/C 63660278 upstream_gene_variant
A/G 63660415 upstream_gene_variant
C/T 63660603 upstream_gene_variant
T/C 63660631 upstream_gene_variant
T/C 63660644 upstream_gene_variant
T/C 63660652 upstream_gene_variant
A/G 63660662 upstream_gene_variant
T/C 63660671 upstream_gene_variant
G/A 63660681 upstream_gene_variant
G/C 63660771 upstream_gene_variant
T/A 63660934 missense_variant p.Met206Leu
C/T 63661161 stop_gained p.Trp130*
C/T 63661166 synonymous_variant p.Gln128Gln
A/T 63661199 synonymous_variant p.Pro117Pro
C/T 63661207 missense_variant p.Gly115Ser
C/A 63661235 synonymous_variant p.Val105Val
C/G 63661250 missense_variant p.Lys100Asn
C/T 63661259 synonymous_variant p.Gln97Gln
C/T 63661263 missense_variant p.Ser96Asn
C/A 63661269 missense_variant p.Cys94Phe
C/T 63661279 missense_variant p.Val91Met
G/A 63661281 missense_variant p.Ala90Val
C/T 63661299 missense_variant p.Ser84Asn
A/G 63661301 synonymous_variant p.Asn83Asn
C/T 63661316 synonymous_variant p.Ser78Ser
T/C 63661468 missense_variant p.Ile28Val
G/A 63661471 synonymous_variant p.Leu27Leu
C/T 63661490 synonymous_variant p.Gln20Gln
C/T 63661498 missense_variant p.Glu18Lys
C/T 63661507 missense_variant p.Glu15Lys
C/T 63661514 synonymous_variant p.Pro12Pro
T/C 63661523 synonymous_variant p.Glu9Glu
C/T 63661530 missense_variant p.Cys7Tyr
G/A 63661536 missense_variant p.Ser5Phe
A/G 63661537 missense_variant p.Ser5Pro
G/A 63661541 synonymous_variant p.Asp3Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23240.1
MEDTSLCCEQLPDGECIEVQKDEDGALIELDCQNGFPEGRKEFVAPAVGMEFESYDDAYNYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVNHLRKETRTGCPAMIRMRLVESQRWRVLEVMLEHNHMLGAKIQRLVKKIGTGLKRKSLPSSDAEGQTIKLYRALVIDAGGDGISNSIAREDRSFCEFSNKMNLRKALHKKYKEESFADIQSRSSSPLLKTRCSFELQLSRLYTREMFMKFQLEVEEVYSCFGTTQLHVDGPIIIFLVKERVLIEGNRREIRDFEVLYSRTVGEVRCICSCFNFYGYLCRHALCVLNFNGVEEIPHRYILSRWKKDYKRLYVPDHSSGTADDTDRIQWSNRLFRSALQVVEEGILSLDHYNVALQSLEESLSKVHDVEQRQE*


CDS Sequence:
>Vu_23240.1
ATGGAAGACACCTCTCTCTGCTGTGAACAATTGCCGGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGCGCGCTGATTGAATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTGAATCATTTGAGGAAGGAGACGAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTGGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAGATACAGAGGTTGGTTAAGAAGATAGGAACTGGGTTGAAGAGGAAGTCGTTGCCTAGCTCTGATGCCGAGGGGCAGACGATTAAGTTATATCGTGCACTTGTGATTGACGCGGGAGGTGATGGAATTTCAAACTCCATTGCTAGAGAAGACAGAAGTTTCTGTGAGTTTTCTAATAAGATGAACCTTAGAAAAGCTCTTCACAAGAAGTACAAAGAAGAGTCTTTTGCAGATATTCAATCAAGGAGCTCAAGCCCCTTGCTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTATATTCTTGTTTTGGTACAACACAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACCGACGGGAGATACGGGATTTTGAAGTTTTGTACAGTAGGACCGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTTTGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACCGCTGATGATACTGACCGCATTCAATGGTCTAATCGGTTATTTAGAAGTGCCTTGCAAGTTGTTGAGGAGGGTATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGAATCATTGAGTAAGGTTCATGATGTAGAGCAGAGACAAGAGTGA


Promoter Sequence:
>Vu_23240::LG5:63661549-63663549(-)
GTCAGCTTTGCCTTCTCCACAGAAACCCTAATTTTCACCTAGACACAAACCCTTGTGATGTCACGTGAACCCTAGTCGCTGCCGCTGCCCAACCAACCTTACCTCTGCATCGCAACCGTGAAGCTGTCGTGAGGACACCATCAACGCCACCACCAACCCTGTTCGTCTTCACCCTAGCCGCCACCACAGGTTCATCTTCTCGTGCAACCTTCCACCATGCCAGAAACCTCCATGGAAAACTCAAACGCGCCTCCCTTGCAGCAACCTAACCCTGCAATACTAAACCACGAAACAACACCAAGCTTCATCTTCAACCCCAAATCGCGATGCTCCGCAATCACCATCAAAGTCGCAAGCCTCCACCTTCTTTCTAACCAATCCCGATACCTGAAAACAGAAAAAAAAAACCTAGAAGCCATCGCGCAACCATGGCAACTTCTCAACCATCCCTCTGCCAACCAGCCCCAATCGCGGAAAAAACCCCAATAGCAACTCCACAAGATTCGCTCCAGCATTCATCTTCTTCATCACGAATCTGGAAATTCAGAGAACGCATAAACCCTTAAGTAACCGCAAGCCTCCGCTGCGTGAGCGTCTTCTCATCCATGCCTCACAATATCCATGTCGCGCTTCCATGACCACCACCGCAAGAATCCTCCACTATTCATTTGAGTCAAAGCTGATCTAACGCGTTAGCATGCACACAACTAAATAATGACAAGTTACCATTAATTGGTGCCAGATCATCACCCTATTAACTTTGTTTGGTTATATTTAACGAAAGGGACGAATTTGACACAAAATTTAGTAAGTGAGAATACATTTCAAACACTTTTAAAACATGGGACTAAATTGATATCATTCAACAAAACTGAGGACAAAATATGCTATTAAACTTTAACTTAATAAACAAGTTTAAAAAAATAATTAACAAATCAAACTCCAATCACTGAACTCATTGATACCTCAACCTAAATGACATATGTTACGGGATTAATTTTGTCTCTTCACATTTATAAGTATTTTTGAGTTTTTCTTTTTTCTTTGAAAAAAATATTTAAACTTCACAACTCGATTTATTCAAGTAAGTATAATAATTAGTTTGGTAATGTGATGATTATATATGTTAAAAAATAAACTTTAACATCTTCCTAAGTATATATATTTCGAACTCTCATACAATTTATTTATAAAGTAATATTTACATTCACTTATATGCTTAAAATTAAGCTATATACAACAAATAATAAATATCATTAACTCTAACTATTTTTTAAATTATCTCTTAACTTTAAGCTTAACTTATTTTTACGTACTTATATTATATTATATTATAATAAAGGCGAGAGAGACTTTCGAAAATATTAAAATATTCAAAAGATTCTTAAAAGAAATTGATTATAAATAACCTCTGCCCTGCTGATGGATATATTGTTTACTCGTTTGTTAAAATATTTAAATCGGCACATTTTGCTAAACTTGAAAAGTGCAGAAAATTTTGGAATCTGTATTCTTCGAAAAAAACACGAGATTGTGTATTTTAGAGAGCTAAAAAGCGCGTTTGAAGAGAACGAAGAAGAAGCGTCAGCATGCTGTGCTTCTGCTTCTATCTTTCGGACTGAGATTAGCGAATTCACGGTTGGTAACTCTGTTCAGTTTTCACTAATTTTCTTCCATTCTCCGTGTCTTCAATTTTTCACTCGATCCTATTATGTTCTCTTGTTTCATCTTTTACCAATGCTTATTTCGAGGGTTTCACAGATTCGGAACCTTTTATGTTCCTTCAAATAAAAAAGCATATATCTAGAGGTTAGTAATTGAGCGAGATATTGCAGTTGAGCATTTACAAAATGTTAGGTTTAGAATTTAGGGCCTTAAATTCGTATCAAGATTAGGTTGAAATGAAAAGCCCTATCACTGATTGTAGTTAATTTATGTTTTATTTTAATTTTTTGGTTGATTAAGAGGTGCAATCACTTGGTATAGGAGGCCTATGTTAG


Gene Sequence:
>Vu_23240(-)
ATGGAAGACACCTCTCTCTGCTGTGAACAATTGCCGGATGGGGAATGCATTGAGGTTCAGAAAGACGAAGATGGCGCGCTGATTGAATTGGATTGTCAGAATGGTTTTCCTGAGGGGAGAAAGGAATTTGTTGCACCTGCTGTTGGAATGGAGTTTGAGTCATACGATGATGCTTACAATTATTATATTTGCTATGCCAAGGAGGTGGGGTTTCGTGTACGGGTGAAGAATTCGTGGTTCAAGCGGAATAGCAGAGAGAAGTATGGTGCAGTGCTTTGCTGTAGCAGCCAGGGTTTCAAGAGAATAAAGGATGTGAATCATTTGAGGAAGGAGACGAGAACTGGTTGTCCTGCAATGATAAGGATGAGATTGGTGGAGTCACAGAGATGGCGGGTGCTTGAAGTTATGCTTGAACATAACCACATGTTGGGTGCTAAGATACAGAGGTTGGTTAAGAAGATAGGAACTGGGTTGAAGAGGAAGTCGTTGCCTAGCTCTGATGCCGAGGGGCAGACGATTAAGTTATATCGTGCACTTGTGATTGACGCGGGAGGTGATGGAATTTCAAACTCCATTGCTAGAGAAGACAGAAGTTTCTGTGAGTTTTCTAATAAGATGAACCTTAGAAAAGGTGACTCACAGGCCATTTATAATTTCCTCTGCCGAATGCAATTGACTAATCCAAATTTCTTTTACTTGATGGATTTCAATGACGAAGGGCACTTGAGGAATGCATTTTGGGTTGATGCTAGGTCCAGGGCTGCGTGTGGTTATTTTGCCGATGTTATTTATTTTGACAACAGTTACTTGTCAAACAAATATGAAATCCAGTTGGTGACTTTTGTTGGAATAAATCACCATGGTCATTCGGTGTTATTAGGATGTGGTCTCCTTGCAAGTGAAACAACAGAGTCTTATATATGGTTGTTTAGGACATGGGTTAAATGTATGGCGGGATGTTCTCCCCAAACTATTATTACTGACAGGTGCAAGGCTTTGCAGAGAGCAATTGTAGAAGTTTTTCCTAGATGTCGTCATTGTTTTGGCTTGTCATTAATTATGAAAAAGATACCAGAAAAATTGGGAGGTTTGCACAACTATGATGCACTCAGGAAAGCACTGATTAAAGCAGTTTATGAAACATTGAAAGTGATTGAGTTTGAAGCAGCATGGGGATTTATGATTCAACATTTTGGAGTTAGTGATCATGAGTGGCTTCGTTCTCTGTATGAAGATCGAGTTCATTGGGCTCCAGTATTTTTGAAGGACACTTTTTTTGCTGGAATGTCTGCAGCTCGCCCTGGTGAGAACATTACTCCTTTTTTTGATAGATACGTGCACAAACAGACTCCGCTGAAGGAGTTTCTTGATAAGTATGAATTAGCTCTTCACAAGAAGTACAAAGAAGAGTCTTTTGCAGATATTCAATCAAGGAGCTCAAGCCCCTTGCTGAAAACTAGATGTTCCTTTGAATTGCAGCTCTCCAGATTGTACACTAGAGAAATGTTCATGAAATTCCAGTTAGAAGTGGAAGAAGTATATTCTTGTTTTGGTACAACACAGTTACATGTGGATGGTCCCATCATAATTTTCTTGGTCAAGGAGCGTGTTTTGATTGAGGGAAACCGACGGGAGATACGGGATTTTGAAGTTTTGTACAGTAGGACCGTAGGTGAAGTTCGTTGCATCTGTAGTTGCTTTAATTTTTATGGATATCTTTGTCGGCATGCACTGTGTGTGCTCAATTTTAATGGGGTTGAAGAGATACCTCACAGATACATTCTTTCGCGATGGAAGAAAGATTACAAGCGTCTTTATGTTCCTGATCACAGCTCTGGTACCGCTGATGATACTGACCGCATTCAATGGTCTAATCGGTTATTTAGAAGTGCCTTGCAAGTTGTTGAGGAGGGTATACTTTCTCTAGATCATTACAATGTAGCGTTACAATCTTTAGAAGAATCATTGAGTAAGGTTCATGATGTAGAGCAGAGACAAGAGTGA