Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_23192	LG5	63171523	63174093	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, protein autophosphorylation, unidimensional cell growth, protein autophosphorylation, protein phosphorylation, unidimensional cell growth, response to brassinosteroid, response to brassinosteroid, protein autophosphorylation, unidimensional cell growth
Cellular Component	is active in	plasma membrane
Molecular Function	enables	transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, protein kinase activity, protein kinase activity, kinase activity

SNP	Position	Effect	Amino acid change
T/C,A	63171559	synonymous_variant	p.Thr845Thr
G/C	63171564	missense_variant	p.His844Asp
G/A	63171568	synonymous_variant	p.His842His
C/G	63171588	missense_variant	p.Asp836His
T/A	63171589	missense_variant	p.Gln835His
C/A	63171740	missense_variant	p.Gly785Val
G/T	63171853	missense_variant	p.Asp747Glu
G/A	63171901	synonymous_variant	p.Ile731Ile
A/G	63171907	synonymous_variant	p.Asp729Asp
A/T	63171913	synonymous_variant	p.Pro727Pro
G/A	63171919	synonymous_variant	p.Thr725Thr
G/T	63171922	synonymous_variant	p.Pro724Pro
C/A	63171931	synonymous_variant	p.Val721Val
T/G	63171939	synonymous_variant	p.Arg719Arg
C/T	63171988	synonymous_variant	p.Lys702Lys
A/T	63172102	missense_variant	p.Phe664Leu
T/A	63172149	missense_variant	p.Thr649Ser
T/A	63172154	missense_variant	p.Lys647Met
T/A	63172155	stop_gained	p.Lys647*
G/T	63172436	missense_variant	p.Pro553His
A/G	63172522	synonymous_variant	p.Ser524Ser
A/G	63172840	synonymous_variant	p.Gly418Gly
G/A	63172894	synonymous_variant	p.Phe400Phe
A/G	63173239	synonymous_variant	p.Tyr285Tyr
T/C	63173297	missense_variant	p.Asn266Ser
C/A	63173526	missense_variant	p.Val190Phe
C/G	63173532	missense_variant	p.Gly188Arg
T/A	63173787	missense_variant	p.Asn103Tyr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_23192.1

MVSVLGEGLYFVLILVVVSATVGTVDAQTKSILLNCGSNSSLNVDGRRWLGDLATDNNVTLSTPSVVANTSTLSGSSIYDPLYKTARIFTVPLNYTIKDVKGNYFVRFHFCPFAIDDFNVNESSFGVVANGLKLLSEFDVPGKISHKNMNLLNSGRNASSFFLVKEYILTVNGDMLVIEFVPDRSSFGFVNAIEIVPVVGELFSGSVSRVGGGNLNLSGHGMETMYRLNVGGPEVQSNQDRDLWRTWEVDSGYMIIENAGSGIKNNSNITYSSVNDTSVAPLLVYETARTMSNSEVLDKRFNMSWKFEVDPDFDYLIRMHFCELVYDRANERIFRIYINNRTAADNVDVFVRAGGMNRAYHLDYFDPVSSKIDTVWVQLGPDTAAGAAGTDALLNGLEVFKLSRNGNLARVERFDIGGNPGSKSKAMAVWVGVGAGVASLAVVALIVLVFCFCKSKRKESSDTKNNPQGWRPLFLYGGAAVNNSVGGKGSAGTQKLYGSVASVRVGKRFTLAEINAATNHFDDSLVIGVGGFGKVYKGEIEDGVLAAIKRANPQSEQGLAEFETEIEMLSKLRHRHLVSLIGFCEEKNEMILVYEYMANGTLRSHLFGSDLPPLPWKQRLEVCIGAARGLHYLHTGADRGIIHRDVKTTNILLDENFVAKMSDFGLSKDGPAFEHTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVVCARAVINPTLPKDQINLAEWAMRWQRQRSLDTIIDPHLRGNYCPESLSKFGEIAEKCLADDGKSRPTMGEVLWHLEYVLQLHEAWLNRDTTETSFSGSNHALRGPKDEGLEMVQDSSSQDEVGFDHKHTAESDSVHTTRE*

CDS Sequence:
>Vu_23192.1

ATGGTGAGTGTCCTTGGGGAGGGACTCTATTTTGTTCTGATTCTTGTGGTAGTGTCTGCGACAGTGGGCACTGTGGATGCTCAAACGAAGTCTATCCTCTTAAATTGTGGTTCAAACTCTTCTTTGAATGTTGATGGTAGAAGATGGCTGGGGGACTTGGCCACCGATAACAATGTCACCCTAAGCACCCCCAGTGTTGTTGCTAACACTTCTACATTAAGTGGCAGTTCAATCTATGATCCTCTCTATAAAACAGCCAGAATTTTCACTGTTCCTTTGAATTACACAATCAAAGATGTTAAAGGAAACTACTTTGTTAGGTTCCATTTTTGCCCCTTTGCGATTGACGACTTCAATGTGAACGAGTCCTCATTTGGTGTTGTGGCCAATGGTCTGAAACTGTTATCAGAGTTTGATGTTCCTGGTAAGATATCCCACAAGAATATGAACTTGCTGAATTCTGGAAGAAATGCTAGTTCATTCTTCTTGGTAAAAGAATATATTCTGACTGTGAATGGGGATATGCTTGTGATTGAGTTCGTTCCAGACAGAAGCTCCTTTGGCTTCGTCAATGCCATTGAGATTGTCCCAGTTGTGGGTGAGCTTTTTTCTGGATCAGTTAGTAGAGTTGGTGGTGGAAACTTAAATTTGTCCGGACATGGGATGGAGACCATGTATAGGCTGAATGTCGGTGGTCCTGAGGTTCAGTCCAATCAGGATCGTGATCTTTGGAGGACATGGGAAGTGGATTCTGGTTATATGATCATAGAAAATGCTGGGTCTGGAATTAAGAACAATTCTAACATTACATATTCTTCCGTGAACGATACTTCGGTGGCTCCTCTCCTGGTGTATGAAACTGCGAGGACAATGTCCAACTCTGAAGTCTTGGACAAAAGGTTCAACATGTCATGGAAATTTGAAGTAGATCCCGACTTTGATTATTTGATCCGTATGCATTTCTGTGAGCTGGTTTATGACAGGGCAAATGAGAGAATATTTAGAATCTACATAAACAATAGGACAGCTGCGGATAATGTTGATGTGTTTGTGCGTGCTGGAGGGATGAACAGAGCATATCACTTGGACTATTTTGATCCTGTGTCATCAAAGATTGACACGGTTTGGGTTCAACTCGGTCCCGACACTGCTGCTGGTGCTGCAGGAACTGATGCTCTCTTGAATGGTCTGGAGGTTTTCAAGCTCAGTCGAAATGGAAATCTTGCACGTGTTGAGAGGTTTGACATAGGTGGTAATCCAGGGAGCAAATCAAAAGCAATGGCTGTCTGGGTGGGAGTTGGAGCAGGTGTAGCTTCTTTAGCTGTAGTTGCACTTATAGTTCTTGTATTCTGTTTCTGTAAAAGCAAGAGGAAGGAATCAAGTGATACCAAAAACAACCCTCAGGGTTGGAGACCATTGTTCCTCTATGGAGGAGCTGCTGTGAACAACTCTGTGGGTGGCAAGGGATCAGCAGGAACCCAAAAGCTATACGGATCAGTGGCCTCAGTTAGAGTTGGCAAGAGGTTTACATTGGCAGAAATCAATGCTGCAACAAACCACTTTGATGACAGTTTGGTAATTGGAGTTGGAGGCTTTGGAAAGGTGTACAAGGGGGAGATTGAAGACGGTGTTCTGGCTGCAATTAAGCGAGCCAACCCCCAATCTGAGCAAGGCCTGGCTGAATTTGAGACAGAAATTGAGATGCTGTCAAAACTCAGACACAGGCATCTGGTGTCCTTAATTGGTTTCTGTGAAGAGAAGAATGAAATGATCTTGGTTTATGAGTACATGGCCAATGGAACTCTCAGAAGCCACCTATTTGGGAGTGATCTTCCTCCCTTACCTTGGAAGCAGCGCCTAGAAGTGTGCATTGGTGCTGCAAGGGGATTGCACTACCTTCACACAGGTGCTGACCGTGGAATCATTCACAGGGATGTCAAGACAACCAATATTCTGCTAGATGAGAACTTTGTAGCCAAAATGTCTGATTTTGGATTGTCAAAAGATGGTCCAGCCTTTGAACACACCCATGTTAGCACAGCTGTGAAAGGAAGTTTTGGCTATCTAGATCCTGAGTACTTCAGAAGGCAGCAATTGACTGAGAAGTCAGATGTATACTCCTTTGGAGTTGTGTTGTTTGAAGTTGTCTGTGCTAGAGCTGTGATAAACCCCACCTTGCCTAAAGATCAGATCAATCTTGCAGAATGGGCAATGAGATGGCAGAGGCAAAGATCACTTGACACAATCATTGACCCTCATCTCAGAGGAAACTATTGTCCTGAATCATTGTCCAAGTTTGGAGAGATTGCAGAAAAATGTCTTGCTGATGATGGAAAGAGCCGTCCTACCATGGGGGAGGTGTTGTGGCATTTGGAGTATGTGTTACAACTACACGAAGCATGGCTCAACAGGGACACCACAGAAACTTCCTTCTCTGGTAGTAATCATGCTTTGAGAGGTCCAAAAGATGAAGGACTAGAAATGGTACAAGACTCTTCAAGCCAAGATGAAGTTGGTTTTGATCACAAACACACAGCTGAATCTGATTCAGTCCACACAACAAGAGAATGA

Promoter Sequence:
>Vu_23192::LG5:63174093-63176093(-)

CTGGTGCCAAAGATTAAACTAAGGTGACATTTTCATTATCGTATAAAAATATTTTGAAGAAAAATAAAATAAATAGAAAATAGAAAAGTGGTGGTAGAGTGAATGTATCTGGATAGCAATGATGATTATTTTATTGGTACGAAGCTTTTGAGTTTAGTCCAGTAGTAGCAATATATTGGTAAGTGTGAAATAATTGAAGTGAATGGCATATAAAATATGTAGGGTATAGCATAGTGTAAGGGTAATGTGGAAGCAAAATAGAAGGACCCCTTAAGGGGTACTCTCAGTACGGAATAATAACACGAGACACCGCTTTCGGTGCACCGCACTCTTTTACAGAACATTATTAAATTTATTCTTAAAATTTCTATGTAAATAAATATCTTCAAAGACTTCAAAATTAAAGCATTTAATGCTAGTTAGATATCTAAATAATAATTTTAGTGTTCTATCCATAAGTTCAAATAATCATGTTTTTTTTTTGGTTTTATGAAAAAGATATTATTTATTCTTTGAATTTGACCTTTATATAGTGAAATCTCACTAAAAACATATCTATGATTAATTGTGGTTAATACATAATGGTTATTTTTTAATAATAATTATGAAAAAGGAACTGTGAGTTATGGGCATGGGGAAGATAATTGCACAATTGATGATGTGGAGGACAATGGCATGTGATCCATCCCATCTCACTATCATCACAAATTATGGATTATGGAACCACCCTTCTCATCAATCATTGCATCCTTTCTTTCTCCTATTAATTTTCTCAATCAAGTACTAACCATTTTCTTCAAATTACCTTCTTTGCATTTTTCATTAATACCACTTTTAAATAAAGAAAAAAGGAAATATTACTCTCATCTTTTCTATATTTCAGATATTTTTTTTTCCAAGAAAGCCAATATTTATAGTTTTCAAATTTCTTTAGTGGTTTTCTTCAAATGCACTTTTTTTACTATCTTACTACTGATTTTGCATGAATCAAGAATCAGGATATTAAATATGGACATTTTAGTTTTAATTTATATATCATGTGCATTAATTATAGTTAAATAAAAAACTGTCTTTATAACAAAACAGTGAGTTTGAAATCCGATTATCAATGTAACTTTTATATTTAATATCTTAAAAATCATACAATTAATTTATCAAATTATCATTAGCCGAGTGTAATTTTTTGTTGCATTAGTAATGCATCTCTCGTTGTGTATGTCAGATAATAAATATCTGAAAATAAACCAATGCAAAATTGGTTCGTTACATAAAGGTTTATCTTAAACTTTTTTAGATGTCAAATCAAATCAAGGGAAACTTTGCTACTGTTACCAATTATGGCATATCAGTTAGAAGAAGAGGAGAAAAGATAAAGTACCTATTAAACAGTGTCCGATTCTTGGCTTATTGTAAAAGATACAAAAACAAGCACAGATGAATTGCAACTTTTCCAATCTGTTTCCAACCACACCCATGTTCTGATTTTCCTTGTTTGTTTATTCAGGAAAGAGCCCATTTTGGGTGACATCTTTGTTTTTATAGTATTTTTCTCTGGATTCCTTATCGCAACTTAGCTAAGTTGTTGTCTTTCTTTGTCATTCATGGTGCACTGCCACACCTTGCATTGGTTTTTTGCCCGTTCAAGTTCAGATCTGTGAATTGCTGTTTCTGTTTGTTGGAGGATTGATTGTGTTCAGCTAAAGCTGGAGGTGGGTTTTTCTTTTCATCTCTTTGTATTGTAGTGTCTCCCATGGTGTGGAAAATGGACATTCATACGCCCCAGAAGATTGTTTTGTCTAGCTATCCATAAAGGCTTCAACTTTCGTGCTTCCTTATTCAAGATCTTGGGAAATACGAGATTGTTTCTGTGATTGGGCAGTGTTGGCTTTCTGGGTCTATGTTGTTTTTTTCTGTATCTGGTTTGTTTTGTAAGCTTTCCCTTTCCAAATTTTGCTTCTTTTTCTAAAGATAAAAAAGGTCTTACTGGAGGAATTGTTACC

Gene Sequence:

>Vu_23192(-)