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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23142 LG5 62672799 62673716 cell division control protein 2 homolog 1 isoform X2
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04068 FoxO signaling pathway [PATH:ko04068]
SNP Position Effect Amino acid change
T/G 62672849 intron_variant
C/T 62672850 intron_variant
G/T 62673011 synonymous_variant p.Gly43Gly
G/A 62673283 intron_variant
T/A 62673326 intron_variant
C/A 62673384 intron_variant
A/T 62673385 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23142.1
MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPEFVKDPRQVKVSGTCGFL*


CDS Sequence:
>Vu_23142.1
ATGGAACAGTACGAGAAGGTGGAGAAGATAGGGGAGGGAACATACGGCGTCGTTTACAAGGCTCGTGACCGCGTCACCAATGAGACCATCGCTCTTAAGAAGATTCGCCTCGAGCAGGAAGACGAGGGGGTTCCCAGTACCGCCATTCGTGAGATTTCGCTCCTCAAAGAGATGCAGCATAGGAACATTGTTAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTCGAGTATCTGGACTTGGATCTAAAGAAACACATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAAGTGAGTGGCACATGTGGTTTTCTTTAA


Promoter Sequence:
>Vu_23142::LG5:62670799-62672799(+)
ACGAACGCTAATCACTAACACATTCCCATGGACGAACGCTATTACTATCATCTCCTAAGACCGAACGTTCATCCAACCAACATTTGACCGAACGTCACTCAGCACATGCATGGCCGAGCGTTCAGCTCCGCCATGGACGAACGCTCAGTTTGCGCGTTCTGCAGAATTTAATTCTGCAGAATTCTCAGAACTCTGCAGAATGGTAACAGAACCTCCCTTAACCATTTCTAACCACTTTTCCCAACTTCTTAGACTCTTAATTCTCATTTTAGACTTAATTAAACTTATCCAAATGATTCTAAACATTTCTACCACCATTTTTAAGTGATTAAAGTTCACTTTCAGCATCCAAAACACTAATTTCAACAACTTAGGGACCCAAATTCGATTCCACTACTTGGAACCTGTTTTCAACTACTGTTATGCTTCTAACAAGTCACAATGGACTTGTCTAGGCTGCCCAAACAGTCCAGGAACACTGCAGCCTTCATTTACTCAAAATCCCTACCTCACTTCCTCTAAAATGACCAAAAAGTGACCCTAAGACACTTGATTTTCCTTCCTATCAACACCATAACAAATTTTACACACCAAAACAGTTCCAACATACATAATTCATCACTCAAAATCATCCCAAACAGTTCACATCCATCAATCACCACATTCACGTAGCACTCACACTTTCATACATGCATTTCAAGTTAGCAAAATTCAAAATTATGCTTCCAACAACATACCAATTTGAAAATCATTATGTAATCACGTCATACAGTAAAATCAAAAAGAGAACTAGCTCCCCTTACCTCTAGTGTAGACAACCAAGCTCAAGTAGAAACCCTAGACCACTTGCTTGCACTTTCAAAAGGTTAGAATCACCTATAAATCATCAATTGATGATAGAAAACGAATCTTAGCACCAAATAGAAGCTAGATTATGGAAGAAAACGAAATGGGTTGCATGCACCAAGTTCAATCACATGCTTACAACCCTAGGGCACATGAGAAAGGGGGTTTTCTTACCGGTTCAGATTTGGGAAAATTGACCGACTAAGAGCAACACCCGCTACTTTGTGATCGTTGGGGCAGCACCTAATCAAGATTTTAATGGTTCAGTGTGAAGGATGGAAAGGGAGAAGATGTAGGAGGAGGAGAGAGCTTGCTGGAAGGGGAATGGTTTCTCAGACAAGAGGAATGAGTTAAAACCCACTGTTTCCAAACTAATGTAATTTTATTTTAAAGTACTCAACCTCTCATCCTTTGCCACTTGTCATCCCCTTTTTGCTGACTCAAATCCAAGTCCTTACAGTTTGCACCTACTTATCTATTATAAATTGTTCTTATTTCTAATCGACATGACTTTCAACATAAAATATATCAAAATATTATCAAAAAAATTAACATTAAATTTTTTTTTTCTAAAATGAATCATGATACTACCCATATGTTATTTTTTCATTAAATTTAGAATAAATCAATACAATAACAAATAAATAATAAATTAATAAAAAATAACGTGTATAATATAAAAATTCATTATTAAAATATATTTTTCCAAAACAAAAATCCACACCTTGTCATTCACCCATCCAATGTTACCGATTAAAGCAGAATTGAATTTTGAATTCTTTGAATAACAAGAGAAAAAAACTGACCAATGGATGAAAAGGTCGTCATATGACTTGTCATTTTCAATAACATTTTTATAATTATGATATTAAGTATATTTTTATTACGGTTCATTCCTTCTGTTAAAAATAATAAAATATTATAAATATGTTAAAGAATATTATGTGATGTGTTCGCGGGTAGTGTATACAATTTGTAAATAGTTAAAAGAAAAGCATTAAACAAAAAAAAGAGGGAAAAGGGTAGGGGAGGAAAGAGAAGAAAGAGTTGAGAAGAGTGAAAGGGAGAGAGAGAGAGAAGAAGTGACAAGAGTGGAGTGTGCGTGAGAGAGTGACTGCAAAACGCTCCACCCTTGTTTCTTCTCAGATCTTCCA


Gene Sequence:
>Vu_23142(+)
ATGGAACAGGTTTGGGGTTAAGCAATGCATCGATTTTTCGTTCTTCACTTTCCGTTCACAATTTCTGCGTTAATTTCGGTTTTCATTTTGCAGTACGAGAAGGTGGAGAAGATAGGGGAGGGAACATACGGCGTCGTTTACAAGGCTCGTGACCGCGTCACCAATGAGACCATCGCTCTTAAGAAGATTCGCCTCGAGCAGGAAGACGAGGGGGTTCCCAGTACCGCCATTCGTGAGATTTCGCTCCTCAAAGAGATGCAGCATAGGAACATTGTTAGGTATTCGCCGTTTACTTGGCTTTTTTCGTTCCAATGCAGTGTCTCCTTATGGATGCTCAAATTGGAGGGCTTATAGTGCTGTTGCCGCGTGCTGTTTGTTGTGATTTTGTGTTTTTGCTTAGCCTCGGAGTTTTTAGCTTCTGAAGTTTAATCAATGAAGGAGGTGCTTTCATGTTGTTGATTGGAGGTGTACTGTGTAGGGCTTGGATTGGTGGAACAATTGATAACCTGTTTTTGATAGTTTGGTCCTTTCCGTTGTTTATGTTTGGTGGACTGGTTGTTGTGTTTAGTTTTTACAATATGTCAGCATTTTATTTTTTACTCATGCTTTTGGTCTTTCTTAATTCCAACAGTGTTTGTACAGCTTTGTGTGGCCTGGCAGCTTTGAAAACGTCTATGTTAATGTTGCTTTTATATGTGCTATTCTTAATCTCATTCTTCCTCTTAGTCAATTCGTTATTGAGTTGTGCTTTGTGGATGCGTGGATGATAGGTTGCAGGATGTAGTGCACAGTGAGAAGCGATTGTATCTGGTTTTCGAGTATCTGGACTTGGATCTAAAGAAACACATGGATTCATCTCCAGAGTTTGTGAAAGATCCACGGCAAGTAAAAGTGAGTGGCACATGTGGTTTTCTTTAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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