Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23118 LG5 62377659 62378862 PREDICTED: E3 ubiquitin-protein ligase RDUF1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 62377659 initiator_codon_variant p.Met1?
C/T 62377760 synonymous_variant p.Ala34Ala
C/A 62377857 missense_variant p.Leu67Met
G/C 62377866 missense_variant p.Gly70Arg
G/A 62377880 synonymous_variant p.Val74Val
G/A,T 62377996 missense_variant p.Arg113Lys
G/A 62378139 downstream_gene_variant
T/A 62378150 downstream_gene_variant
T/A 62378154 downstream_gene_variant
C/T,* 62378278 missense_variant p.Thr149Ile
G/T 62378280 stop_gained p.Glu150*
G/T 62378402 downstream_gene_variant
T/C 62378552 downstream_gene_variant
G/C 62378698 missense_variant p.Ala215Pro
A/G 62378843 missense_variant p.Lys263Arg
T/A 62378857 missense_variant p.Ser268Thr
T/C 62378860 stop_lost&splice_region_variant p.Ter269Glnext*?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23118.1
MAEPGMTRGLHRYFFLFFRFLQSFQSSVVHLLQAVCRHELPSEQASSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMENGGNLSEGSRRISLSVGSGRVRESRGGIGRMFRNWHRSGYYVVRRCRAGLYSFSRIHHRRGLQRKIALAAYHTIGEEAMLNYLICLMLICIRRIFFIRLPKNRTTLWLGTFDTAEEAALAYDKAAYKPLHSSVDAKLQAICEGLAEMQKQAKAICEGSEGSLSRNGSMKDVLKEQTLS*


CDS Sequence:
>Vu_23118.1
ATGGCAGAACCAGGAATGACGAGAGGCCTTCACAGATATTTTTTTCTCTTTTTTCGTTTTCTTCAAAGCTTTCAGTCTTCTGTGGTTCATCTTCTTCAAGCCGTGTGCCGCCACGAGCTGCCGTCGGAGCAAGCGTCATCGGAGAGCAGAGTTGCTGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAATGGTGGGAATTTGAGCGAAGGTTCTAGGAGAATCTCTCTGTCAGTTGGAAGTGGGAGAGTGAGGGAAAGTCGAGGTGGAATTGGCAGAATGTTCCGGAATTGGCATAGAAGTGGGTACTATGTAGTTAGAAGATGCCGTGCCGGGCTTTATTCTTTCTCCAGAATTCATCACCGAAGGGGACTCCAGAGAAAGATTGCTCTTGCTGCATACCACACCATTGGGGAAGAAGCCATGCTAAATTACTTGATTTGTTTAATGTTGATATGTATTCGTCGCATATTCTTTATCAGACTCCCCAAGAATCGGACCACGCTCTGGCTGGGAACATTTGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGCGAAGGCCATATGCGAGGGGTCTGAAGGTTCTTTGTCCAGGAATGGATCTATGAAGGATGTACTGAAAGAACAAACCTTGTCCTAG


Promoter Sequence:
>Vu_23118::LG5:62375659-62377659(+)
CTTGTACAGCTGCATGAAACGAAAGGGTTTATATAAGGGTGTCTGGATCATCGGCATCTGCATCATCACTTTGAAAAAAGCCTGAAATGGCACCTCGCATTTCCAGAGTCTCTTTTTCTGTTTTGGTTGCTTCCCTGGTCCTTCCCTTGTTTTTCCCAGAATGTTCTTCTTCTTCTTCTGTGCTCATTGCAAGAGAATCAGCCCCAAAATCAGATGTTGATCTTTTAGAATTCCCTCTGAACTTAGAATACTTGGAGGCTGAGTTCTTCTTGTTTGGAGCTTTGGGTCATGGATTGGATGTGGTTGCTCCAAACCTGGCCGGGGGAGGACCTCCTCCCATCGGTGCCAAAGCTGCCAAACTTGACAAATTTTTCAAGGATGTCATATTGCAGTTTGGTTTGCAAGAAGTCGGACACTTGAGGTTTTGTTCTATCTCTAACTACTACTCTCTGCAGTTATAATTATACTTTCAAGGCAAGAAATGAAAAATTATGCAGAAGATTTGCGATGTGTTGTTGAGTCTAATTTGTTGCAGGGCCATAAAGAGCACAGTGAAAGGATTCCCCAGGCCTCTGCTGGATCTAAGCCCTTCATCGTTTGCCAAAGTAATGGATAATGCGGTTGGGAGAACTCTGAGTCCACCCTTTGACCCCTATGCTAATTCAATCAACTTTCTTCTTGCTTCTTACGTTATTCCCTATGTTGGCCTCACTGGCTATGTTGGTGCCAATCCAAAGCTGCAAAATGCTACTTCCAGGAAGGTAATTTCTCAAACCCTGCACTGTTAATCATTCTCATGTGTTAGAGTTTAGATGTAGTCACTCTTATTCTACACAATCTGCCTTATTTCTTTTCTTATTATAGAAGATGCCACTAACTGCATTCTTATTATTACTCTATGTCTCTCACAATGACAATATGTGCATGCACACGAACAGCTTGTGGCAGGGCTCCTGGGAGTAGAATCAGGACAAGATGCAGCTATAAGAGCATTTTTGTATGAACGGAAAACGCAATCGGTGCATCCCTATGGATTGAGCGTGGGAGAGTTCACAGATCGCATTTCAAGTCTCAGGAACAAGCTAGGAAAAGCAGGTTTGAAAGATGAGGGTCTTGTGGTTGCTAAGGAGTATGGTGCTGAGACGGAAGTTAATGGAAACATTCTGGCTGGTGACAGAGATTCATTGGCATATTCAAGAACCCCAGAGGAAATATTGAGGATAATATATGGAACAGGTGATGAACATGTTCCTGGTGGCTTCTACCCTAAAGGAGCAAGTGGTCGCATAGCAACACCTTACTTGAAGCATTCCATCTAAAGCTTCAGCATTTGCTTTACAACTTGTGGCTTCAATCAAACTGTTGTGGTTATTCTACTGCAGTAAGCTAGTATAATAAGAATGCTACTTTCTACTTTGGTTACACTTTATCAACAACTTATCTGTCTTTCTTAATACATATTTTATAAAAAAAATGTATCTAAGTCAGTGTATGACATGCGAGTAACGTCAGTGAATTTGGTTCAGTTGAATTCATATCGTGATTTTGATTTAAGATATTATAAAATTATTTAATTAATTAAAAATTAAAATTAAGATAAATAAACATACATGCATTTGAGTTAAGGAATGATTTAGAAGAAGAAGAAGAAACAAGAATGAGCACTCCACAGTTTGTTTAAATTTTTAAGCATAAAAGTTAGATTATCCAAATATGAGTAAACTTCAGTTGGATTTGGATTAGTTTCAATAAAATATGAAATCTGAATAGACTATTTTATTTCTTCGTTTTGTTCGTTAAGTAATGTCAATATTTAGATATTTTCACAATTAACTAAGAAACTCCAAGTAATGGTATTGGATTTTTAGTTACTTTAACTGATGAGAAGGAATGATGAGGGTAATAAAAAAAAGTTTAATAGGTTCGGAGGTCCCTATATTTGCGGGTTATGTTAAACAGGTGGCATGCTGAGTCAGGTGGCAGAGTTTGAGCTTAATACA


Gene Sequence:
>Vu_23118(+)
ATGGCAGAACCAGGAATGACGAGAGGCCTTCACAGATATTTTTTTCTCTTTTTTCGTTTTCTTCAAAGCTTTCAGTCTTCTGTGGTTCATCTTCTTCAAGCCGTGTGCCGCCACGAGCTGCCGTCGGAGCAAGCGTCATCGGAGAGCAGAGTTGCTGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAATGGTGGGAATTTGAGCGAAGGTTCTAGGAGAATCTCTCTGTCAGTTGGAAGTGGGAGAGTGAGGGAAAGTCGAGGTGGAATTGGCAGAATGTTCCGGAATTGGTTTGGGAGAATTGGGGCTTTGACTACAAGTCGTAGCCTTTCAACTTCGCTCTTCAGTAGAAGAAGAAGTTCCACGAGAACCTGGGTTTTGGAAGATTGATTCGGATGGAGTTGTATTTTGAAAGCAAGTTTTCAAATTTCAGTTTTCGAATTGAGATTCTTACTGTAAATAGGCATAGAAGTGGGTACTATGTAGTTAGAAGATGCCGTGCCGGGCTTTATTCTTTCTCCAGAATTCATCACCGAAGGGGACTCCAGAGAAAGATTGCTCTTGCTGCATACCACACCATTGGGGAAGAAGCCATGCTAAATTACTTGATTTGTTTAATGTTGATATGTATTCGTCGCATATTCTTTGTAAGCATTGTTTTTAGTTAAATTTGGTATGTTGATGATGTGGGTATGGATTTGCTGTATCCGCTACCAGTGGGGTTACTGGTTCACTCCTTCCAACTTGGCAGTGTTGGCTATTCATTTTTGTTCAATTCTGCGTGTTTGAATGATTGATTTATTTCATTATAAGTAAAATATTTACTATTTATTCAACACCTTTCAATATATAATTTATTCATGCTAAGATCAGACTCCCCAAGAATCGGACCACGCTCTGGCTGGGAACATTTGACACCGCCGAGGAAGCCGCTCTGGCGTACGACAAGGCCGCGTACAAGCCGCTCCATTCCTCCGTTGACGCGAAGCTTCAGGCCATATGCGAAGGCCTGGCTGAGATGCAGAAACAGGCGAAGGCCATATGCGAGGGGTCTGAAGGTTCTTTGTCCAGGAATGGATCTATGAAGGATGTACTGAAAGAACAAACCTTGTCCTAG