Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_23066 LG5 61934802 61936192 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to abscisic acid, response to osmotic stress, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to virus, positive regulation of transcription, DNA-templated, response to abscisic acid, response to abscisic acid, response to osmotic stress, positive regulation of transcription, DNA-templated, response to salt stress, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation, response to abscisic acid, response to salt stress, response to water deprivation, response to water deprivation, response to virus, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, DNA-binding transcription factor activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 61934855 3_prime_UTR_variant
G/A 61934947 3_prime_UTR_variant
C/T 61935002 3_prime_UTR_variant
C/A 61935149 missense_variant p.Leu204Phe
C/A 61935156 missense_variant p.Gly202Val
G/A 61935161 synonymous_variant p.Thr200Thr
G/A 61935209 synonymous_variant p.Tyr184Tyr
C/T 61935228 missense_variant p.Ser178Asn
C/G 61935235 missense_variant p.Asp176His
A/T 61935244 missense_variant p.Ser173Thr
G/T 61935245 synonymous_variant p.Ile172Ile
G/A 61935287 synonymous_variant p.Cys158Cys
C/T 61935294 missense_variant p.Arg156Gln
G/C 61935334 missense_variant p.Arg143Gly
C/T 61935337 missense_variant p.Ala142Thr
T/C 61935423 missense_variant p.Asp113Gly
A/T 61935430 missense_variant&splice_region_variant p.Leu111Met
A/C 61935445 upstream_gene_variant
T/A 61935491 upstream_gene_variant
A/G 61935498 upstream_gene_variant
A/C 61935534 upstream_gene_variant
T/A 61935551 upstream_gene_variant
T/A 61935585 upstream_gene_variant
T/C 61935653 upstream_gene_variant
G/T 61935781 synonymous_variant p.Arg87Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_23066.1
MSDIAEYSHSSNAGTRKKRSINKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQDLKNRLQKPLEQTESCSTRYKAANSMESEARNGETVKREQEIKRPCWTAGRSEGIVRSVISDCDSSIKAKQYFGVEDEASLLNFVENTDGSLTTPQHWGLLESDDIMGCDYQWWDFWS*


CDS Sequence:
>Vu_23066.1
ATGTCAGATATTGCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCATAAACAAAAAAAGGTTCAGCGATGGACAAGTTAAATCACTGGAATCCATGTTCGAGACAGACTCCAGACTGGAACCGGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGCTAAAGCAGCTTCAGCGAGACTACACCACGCTTCGAGCCAATTATAAGACGTTGGATTCAAGGTTTGATGCTCTCAACAAAGAGTATCAATCAATGTTAACACAGTTGCAGGATCTGAAAAATCGATTACAGAAGCCCCTAGAACAAACTGAGAGTTGTAGTACGCGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGCGAAATGGAGAAACAGTCAAAAGAGAACAGGAGATAAAGCGGCCTTGCTGGACAGCAGGAAGATCAGAAGGCATTGTTCGTAGTGTTATCTCGGACTGTGACAGCAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAACTTTGTCGAGAACACCGATGGTTCTTTGACAACACCACAACATTGGGGTTTGTTGGAATCAGATGATATCATGGGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGA


Promoter Sequence:
>Vu_23066::LG5:61936192-61938192(-)
TTCTTTTAGGTTAAACTGTATAGTTATTATTTTTTATTGATATTTACAAATACGAATATTTATTATATAATTTCTTATTTTTAAATTTAACTATTTATCACATCTAATGAGAAATTGTTTCAGAACTTTATGTAATTGTATTATAATTGTTTCAAAATTTTAAATTCCTTTTTCTCTGTACGAGAAATTTTATGTCATTTTATTAAACGAGTTTTCCAGGACATGTAGTAAACTTGTAAGGACAACTTTTATGAACAATATATATTGTCATTCATTGTAGTGTCGGTGTTTGGGCCCAATTGGTTTTCGTGTGCCTCTTGATGATTGGCCCAAAACAATATTTTAAAGTCTATTTAATTTTATTAAAATTTTAAAATATTTTTTAATAAAATATATTATAGCATCAGTGTATTGATAATGCTTAGTAGAGGACAGGAAAAAAAACTCAGAACTTGTGTTTATACCTAATTGGTTTTCATCTGTCTCTTTATGATGGGCCCTAAACAATAATGGGGGCAGGCCATTGGTTTTGCACCTCAGTTTTCTTCTACACTCCCCAAAACATTAACATCTCTATTTTACCCTTCGGTATAAAGTTTTGTCTGGATTATGCAATTTTGAAACTTTTTAGATTATGCAATTTTGAACTCAAAAACTTATACCTAATTACACAATCCAGAACATTAATTTGGAAGTCAATATAGTATCTTAAACTACACAATTTAAAAATCAATTTAGGTATTTTCTTCTACAGTTAAATATTCAAAATATGTATACTCTAATTCGAAAGGGAACTAGATAAATGTCTTTCAAATCATGTTGACAAACATTTTACTATTAGACCAATGTTCTTTGGGTCTGTATCTCTCAACAACTAGTCTCAATCCTTCTTGCATATGTTCGTATAGAAGTGTCAAAATTGAATAACACATTATCCAAAGCCTCTTTAAGTTTTTTAGTCGTTAAGATGACTTTAATCCTAATACAAATACTTCCTACTATTTGTTAACTGTCTCTTATTGGACCAATTGGATAACAAATACAACTATCCAACTCTAATGTTTTTTTTTTCTTAGCTAACACTCTGTTCACTTCATATAGAGAAAGTGCAAAACAGAGGACGAGAAAAGTGAAGAACAAGCCTCTTTGAATTTCATGATATGGTTGGAAAGTCAAGCTATCAAGAAAGAATGATGTCCATTCATTTTCCATACACGTGAAAAAAAGAATCTATGTTTATTTCATCAATATCTGTATTATATATAAAAACATTTATTTCGCTGCAGTTTCACAATAAAATTAAAATTAAAAACAATTTAAATATACTTTCTACTTTTAGTCTTCCGAATAATTTTAAAAACATAAAAAAGTTTTATATTTTAAAACTAAAAATATCTCAAATACATAAAGAATTTTATGCTCATAATAGAAAAATATTAAAAATAAATAAATTTCTCTAATATGGTATATGCAACTAACAGCATTGCCCCTTTTTATAATTATTTCAGTCAAAAATTAAACAAAAATTACAAAAATAAATAAAAAAGTATATAAATCATGTTTACAAAATCAATATTACTAATAATTAACTTAAAAAGCCATATATATTTTATTTAAAAAATACGCTACAAAGTTAAACTATTTAATAAGATATATTAAAAATTAATGAAAGAAATTTCTTAGGCAAGAACAGATTACGTGGACCGAATTCAGTCTAAAATGGAAAAGCGATCGACACCTGTACCGAAATGCTTGTCCCAGAATTGTCAGTCTCTGAATAAAGTACGACACTAATCTTAAACAACGCCACGTGTTGCCAAATTTTTTATAGTGCTTTGAACGTATAACCACTTGGTTCCTTTCACAGAAGGACAAAAGAAGAACGTAACCGAGTAACCATGTTTTGTGGCTACATGTCATTCGGTGTCCCTCCTGAACTTATCCCATCGTTACAGATAAAAATCGTCTTTATTTAAACTAACAAATTTTCCATTCTCAAC


Gene Sequence:
>Vu_23066(-)
AATCATGATCCATGCACAATTTCAATACTCGATTCGGAAGTTCACACATTCTCTCATCATAATACCATATTGTATAAATAGCAATTCCCATAACTTGAGTAGCCAAAACATCACACGTCACCTTATTCGTCTGTTGATCATCAATCACCAAATATGTCAGATATTGCGGAATATTCTCATTCATCGAATGCAGGCACGAGAAAGAAGAGGAGCATAAACAAAAAAAGGTTCAGCGATGGACAAGTTAAATCACTGGAATCCATGTTCGAGACAGACTCCAGACTGGAACCGGCAAAGAAATTGGAGGTGGCAAGAGAGCTTGGCTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAACAAGAGAGCTCGATGGAAGCTAAAGCAGCTTCAGCGAGACTACACCACGCTTCGAGCCAATTATAAGACGTTGGATTCAAGGTTTGATGCTCTCAACAAAGAGTATCAATCAATGTTAACACAGGTGAGAAATACTTGCGATACACTGTTGATTCTATGCTTGAGATATACAAACATTTCATGCATAAAGTTTCTGACTTTCAATTTTTTTTCTTAAATGGGTCATGTAATTATTTCTTAATTTTTTTAAAATTACTGTGCTGTGGTAGTGACATCCATTGCAGTTGAGTGGGTGATTCTGTGTTACATCAATGGGTCCAATAATAGAACAACGTTAGAATTAGCTTAAAACTGCATAGACAGTTTGTGTAGGATACGCTCTAACGAATTAAGTTTTCAACAGTTGCAGGATCTGAAAAATCGATTACAGAAGCCCCTAGAACAAACTGAGAGTTGTAGTACGCGATACAAAGCAGCAAACAGCATGGAGAGTGAAGCGCGAAATGGAGAAACAGTCAAAAGAGAACAGGAGATAAAGCGGCCTTGCTGGACAGCAGGAAGATCAGAAGGCATTGTTCGTAGTGTTATCTCGGACTGTGACAGCAGCATAAAGGCAAAACAATACTTTGGTGTGGAAGATGAAGCTTCTCTTCTGAACTTTGTCGAGAACACCGATGGTTCTTTGACAACACCACAACATTGGGGTTTGTTGGAATCAGATGATATCATGGGCTGTGATTACCAATGGTGGGACTTCTGGTCCTGAATGAAACAGAACAACCGAATCATTTTATGCATGTGCATGACATATCTGAAGCGAAACAAAGTGTTGCTGGTTGCCGTATGATAAAGACCGAATCAGCAAATCACGTTATAGTATATGATTCAATATTTTAAACAAGACCTGGTCTCCTTCCTTCGCATTTCATTCCATGCTCTTGTCTTGTTATGAATAACATAATAGGTTATAATCTCAGTGTAATCGTCGTACATAAAGAGAAAAATAATATCGAAATAAGTAGCTTACACATT