Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22915 LG5 60401261 60404339 PREDICTED: trihelix transcription factor GTL2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, calmodulin binding, cis-regulatory region sequence-specific DNA binding, cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/A 60401536 5_prime_UTR_variant
G/A 60401549 5_prime_UTR_variant
G/T 60401576 5_prime_UTR_premature_start_codon_gain_variant
A/T 60401662 5_prime_UTR_variant
G/A 60401709 5_prime_UTR_variant
A/G 60401727 5_prime_UTR_variant
A/G 60401751 5_prime_UTR_variant
T/G 60402292 intron_variant
T/C 60402429 intron_variant
C/T,* 60402498 intron_variant
G/A,* 60402527 intron_variant
A/G 60402642 missense_variant p.Asn150Ser
T/C 60402808 synonymous_variant p.Gly205Gly
T/C 60402832 synonymous_variant p.Asp213Asp
C/G 60402922 synonymous_variant p.Val243Val
G/T 60403013 missense_variant p.Ala274Ser
A/G 60403056 missense_variant p.Asp288Gly
A/G 60403117 synonymous_variant p.Leu308Leu
A/G 60403132 synonymous_variant p.Thr313Thr
A/C 60403134 missense_variant p.Lys314Thr
T/A 60403144 synonymous_variant p.Thr317Thr
G/A 60403147 synonymous_variant p.Thr318Thr
A/G 60403150 synonymous_variant p.Ser319Ser
T/C 60403163 missense_variant p.Ser324Pro
G/C 60403192 synonymous_variant p.Ser333Ser
A/G 60403194 missense_variant p.Asn334Ser
T/C 60403211 synonymous_variant p.Leu340Leu
G/A 60403216 synonymous_variant p.Leu341Leu
A/T 60403251 missense_variant p.Asp353Val
G/A 60403429 synonymous_variant p.Ser412Ser
G/C 60403441 synonymous_variant p.Ser416Ser
G/A 60403578 missense_variant p.Ser462Asn
A/G 60403675 synonymous_variant p.Arg494Arg
A/G 60403929 missense_variant p.His579Arg
A/G 60403991 3_prime_UTR_variant
G/A 60404074 3_prime_UTR_variant
T/A 60404089 3_prime_UTR_variant
T/A 60404194 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22915.1
MFDGVSDQFHQFIAPRTTLPLHLSFPLHASSTSPTTFLPFDPYNPSQSQQHHFPLQTNLFHPLHPPSPPTHKHKLPSIHIHTHQTQLPDLTDSWSNDELLALFRIRSTMENCFPEHTWDHVSRKLAELGFKKSAEKCKEKFEDESGYFDNVSNYGKNNYRFLSELEELCQNPDSGGGGGGDCDGGDDGIVRSEKTLLHLGADNMGHRQCDGTDDKVVVEKSKERKRKRRDRFEMFKGFCESFVNKMMAQQEEIHNRLLEDMVKRDQEKFAREEAWKKQEMEKMNKELDIMAQEQAIAGDRHATIIEFLKKCATKTITTSTTSPSPPSQNANGSNLPNRSLLHSLNPNSPSNEDNNLDPTPTLLNHDETKLRAENPSSSETLLQVPSSSNSSPTPHNPSSSLNSQNNTIPLESNSVSTYKTTSTTPPGSTENSKDDVGRRWPRDEVLALINLRCTSVSNNNNSSSEEKEGNNKGPLWERISQGMSEVGYKRSAKRCKEKWENINKYFRKTKDVNKKRSLNSRTCPYFHQLSCLYGQGKIVAAQSEREGNYMSPTANSGQVPPDVDDEDESSHVGSGGLDHYAC*


CDS Sequence:
>Vu_22915.1
ATGTTCGATGGAGTATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTTCTCAATCTCAGCAACACCATTTTCCACTCCAAACCAATCTCTTTCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACATTCACACTCACCAAACTCAATTACCAGACCTAACCGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGCAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGGTGGTGGTGATTGTGACGGTGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGTCATCGACAATGTGATGGAACAGATGACAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTCAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAGTTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCCACCATAATTGAATTCTTAAAGAAATGTGCAACAAAAACAATAACTACGTCAACAACTTCACCATCTCCTCCAAGCCAAAATGCCAACGGTTCGAATCTTCCAAATCGTTCATTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAACCTCGATCCAACACCAACGCTTCTGAATCATGATGAAACTAAGTTAAGAGCAGAAAACCCTAGTTCGAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCATCCCCAACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCGAATTCAGTTTCGACGTACAAGACAACCTCAACAACCCCACCAGGAAGCACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAACAGCAGCAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGGCAGCACAGTCGGAAAGAGAAGGGAACTACATGAGTCCAACCGCGAATTCCGGCCAAGTGCCACCGGATGTTGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAA


Promoter Sequence:
>Vu_22915::LG5:60399261-60401261(+)
CAAATACATTTAGAAATAAGAAAACATTTAATATTTTTGATTTTTTAATATAATTTAATATTTAAAATTTATAGGTAGATTGGTAAGTCAATCAGACTCACTACAGAATTCGAATGAGGCAAAATTTTAGTGGACCAAGTTCATTTTTAATCTATGTCAAAATTTATAATTTTTTTTATCTCAACCTAATTCAAAAAAATTAACTCGTATTTTAATCTATTTTAATAGCTCTACGAACTATTAAATTGTTCATTGATTATCAACCAACAATTGCACATTTTCTTCATCATTCGACCCTCAATTCTATTTTAGCCAAATATTTTTACACAGTAGACATTTGCTAAATATTATGCTTCACAGCCCGATAGAGTCCCTATGGGTTGCTTTTTAAAACACCAAAATATTGGTGCAACTTGAAACTTGAAAAATAATAAATAATGCTCCTTTTATCTTTCTTGTCACTTTCACAAAATCCAACCAACTTATCTTTGCAATCTTTAGAGAAGAAAATTTCCTAAACATGCAATTCTCTTCTAGTATTTCAAAATTCTCTCCAAAATCTTCTCATTCTAATAGATTACATAATAAGAAAAGAAAAGTAAAAAAGAAAGAAATAAGAGAAAATTATATATATTATCTTATACATGTAAAAATTGTACATACAGGTAAAGATGTACATATCTTATAGATTGATCTTATTAAATACCAAAACTAATTACACTAATTAAGAAAGAAAAAACTTATTTAGTATCATTAGTGATAAAAACTGAACATGTCAAATTAGTCCCAATTGAATTGGAGTACAGTTAAGAAAAATTAAACTTCAAAATTAACGAGTCTAATAATTAAAAGAAAAGAGAGAGAGAGCTATTGAAACATAAAAAAAAAAAGGAAAAATATTAATAAATTATAAAATAAGAGTATATATATATATATTGATTTTTTTCATTTAATACAGATTATAACTGGCAGCAACCTAAATGAAAATTGCAAAGTAATTAAAGCTACGTACCTTTGTATAAAAAAAAAGTGTCAGGTTTTCTGATCCTCCTTTGGATATTGTTGGATCGAGTGGACCAAGTTAAGCATGCTCCCAGGTTACAAAACCAAACTCATTTTACCAAATTTGGAAGGTTACCTCAGCTAACTCCTCCAATTTATCTCCTAATTCATGACACAATTAAACCAAACAAAGAAAAAAAAAACAGAAGATGAGACGCTCCAACATTATTGGACAGATCGAAACTGCAATTCAAAAACGATGAAAAGGTTTTTCACGAAACAAGAAAAATGATTATAACAGCATTGAAAGCACCTTCATGAAAAGGGCAAACAGTTATTCAGTAATTTTTTTTCCAACTTAAATGTTGATTCTGTAAGACTAATTGCGAGGTGGTCGTCTTTCACAACACAATATATAGTGACAACACGGGAGTTGCATATTGTGCAATGTTTATGTAAGGAGAGAGGGTCCCACGTTGTCTTTTTGTATATCAGGCTCCTTTGGGGGCCCCCTGTTTCACCAGACATCTCTTCGTCTTTCATTTTTACATTTTTTTATTTATTTTACTCTTACAATAATGTCATGTCTGCATCGATTTCCCCCACACAGTGTCAATTTAGCACCATTTTCCTTAAAAAGTAAATTAGTATTTAATTTGTTATATAAATTTATTTAGTATTAAATTTTGTTAAATTGTGTCTTTAAAAAAGGTCACGAGTATATTACATGGCAGAAGATGCAAAAGAAACAATTTGTAGCATAAGCTTTTCTCCCATCCCATGTGCTCTTGGCCGTGTTCAGTGACTGTGTGCAAGCGTCCACTCCACAGTAAGCGCTTGCACGTGCTGGCTGCTGTTCCTGTACGACGCCACTGTATTCCTTTGTACCAACTGAAGATTCCCATCCTTAAATCACCGGTCCCACTCTCTGCTTCTTTTCACGTGTCCTGCCATCCCTATGCCGTTAATTACACCATCGTCACCGTCACCCACTCCTA


Gene Sequence:
>Vu_22915(+)
ACTCTCTCCCACTCTCACTCCCCCGCGCGTCCACATCAACCCTCTCATCGCATCCTTAAAACTTCAATCTTTCCCATTAAGCCACTGCTTAGGATCCGTGGGTGCCAAAATACAAAATATTCTTGTGTAGTGTGTGTTTGATGAGGTGACGAAGACGAGTTTGGATTTTGTTCGGACGAGTTTGAAATGAATTGAATATACCTTGTATGGGAACGTGGTTGGATTGACTTGTCCAAGGTCTCACATTATTTAATTGCGTAAAATACTATGGTTTGGAGGGTGGCCGGTGAGTTCACTTTCTCCTAAAAGAGTGTCGGGGCCATCTTTTTCCTTTTCATGCAAGGACAATCTCCTTGATAAACGCGAGGGAGAAAGAGAAAGAGAAAGAGAAAGAAAGAAAGAAAGAAAGAAAGGATTGTTGTAGCAATGTGGTGATTTACAGTGAGCAGCGAGGAGGAGGAGGAGAAAGAAAGAAAGAGCATTTTTTCCAACACGAACACCAACATGTTCGATGGAGTATCAGACCAGTTCCACCAATTCATAGCACCAAGGACCACTCTTCCTCTTCACTTGTCTTTCCCTCTTCATGCCTCTTCAACTTCCCCAACTACCTTCTTACCCTTTGATCCCTATAACCCTTCTCAATCTCAGCAACACCATTTTCCACTCCAAACCAATCTCTTTCACCCATTGCACCCTCCTTCTCCTCCTACCCACAAACACAAGCTTCCTTCAATCCACATTCACACTCACCAAACTCAATTACCAGACCTAACCGATTCCTGGTCCAACGATGAACTCCTTGCACTTTTCAGAATCAGATCTACCATGGAAAATTGCTTCCCGGAGCACACATGGGACCATGTCTCCAGGTACCTATATATATATATTCCATTACATCACATTATCCCACTGTTGTTATCTTTTAATTCACTCACTGTTGTTCCTTTGAGCTGAGACTAATGATCTGGGGGAATGAGAAATTAATGAGTTAGATACTGTATGCATTCCATTAATCATCACATGTTAATTACATTCATGTGTTAGACAAATTAACGCACACGTGCACCAACCAGCAACCAGCTATAGTACTTTAGCTCGCACGCTGACACAGCACGGCAAGACACAGAGCCCGAGAGAAAGATGTTTATATATAAGGCTCCGCCGGTTGTGGAGGAAAGAAATTAAGTTGAAGAAATGAAAACCATTAGAGGACAGTACGTGCTTACAGTTTTTGCGAAGTAATAACAGAAATGCTTATGTTGTGGGTTTTGGATTTTTTGTATTTATGGTGTGTGCAGGAAGCTGGCAGAGCTTGGGTTTAAGAAGAGTGCTGAGAAGTGCAAGGAGAAGTTCGAAGATGAGAGTGGATATTTCGACAACGTTAGTAACTACGGCAAGAACAATTACCGGTTCCTTAGCGAGCTGGAGGAGCTTTGTCAAAACCCTGATTCGGGTGGTGGTGGTGGTGGTGATTGTGACGGTGGTGATGATGGAATCGTGAGGAGTGAAAAGACCCTCCTCCACCTTGGAGCAGACAACATGGGTCATCGACAATGTGATGGAACAGATGACAAGGTTGTGGTGGAGAAGTCAAAGGAGCGAAAGAGGAAGAGGCGTGACAGGTTCGAAATGTTCAAGGGTTTTTGCGAGAGTTTTGTCAACAAGATGATGGCTCAACAGGAAGAGATTCACAACAGGCTCCTGGAGGACATGGTGAAAAGGGACCAAGAGAAGTTTGCCAGAGAGGAAGCATGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTTGACATCATGGCACAGGAGCAAGCTATCGCCGGAGACAGACATGCCACCATAATTGAATTCTTAAAGAAATGTGCAACAAAAACAATAACTACGTCAACAACTTCACCATCTCCTCCAAGCCAAAATGCCAACGGTTCGAATCTTCCAAATCGTTCATTATTGCACTCACTAAACCCTAATAGTCCTTCCAATGAAGACAACAACCTCGATCCAACACCAACGCTTCTGAATCATGATGAAACTAAGTTAAGAGCAGAAAACCCTAGTTCGAGTGAGACATTATTACAAGTTCCTTCTTCCTCCAACTCATCCCCAACTCCCCACAACCCTAGTTCTTCCCTCAATAGCCAAAACAATACTATCCCATTAGAGTCGAATTCAGTTTCGACGTACAAGACAACCTCAACAACCCCACCAGGAAGCACTGAGAATTCGAAAGATGATGTTGGGAGAAGATGGCCAAGGGATGAAGTGCTAGCACTGATAAACCTGAGGTGCACGAGTGTAAGTAACAACAACAACAGCAGCAGTGAAGAAAAAGAAGGAAATAACAAGGGTCCTCTGTGGGAGAGAATCTCGCAAGGGATGTCAGAGGTGGGATACAAGAGAAGCGCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACTAAGGATGTTAACAAGAAAAGGTCCCTTAATTCTAGGACCTGTCCCTATTTCCATCAACTGAGTTGCTTGTATGGTCAGGGAAAAATCGTGGCAGCACAGTCGGAAAGAGAAGGGAACTACATGAGTCCAACCGCGAATTCCGGCCAAGTGCCACCGGATGTTGATGATGAAGATGAGTCTTCTCATGTGGGGTCTGGTGGTTTGGATCATTATGCATGTTAATTCATCTCATGCAGGTCAGAAAAAACTTTGAAATTATTAAGTAATAATACCTTCTTTGGATTGTGATTACTTTCAAATTCATTAATTTCTCCATTTTATAATAACTTCCACTGTTTTCCTTCTTTTCTTTTGGTTTTGCTTTGTGTTGGTGGGAATTGAATATGTATATTTTGCATTTTGGTTAGCACCGACAGCTTGAGGAAGTACAACAATGTTTCTCTTCTGTGGAAGACTTTTTATAATGGCCCTTCTATTTATTTACACCTTCTTTTCATGAGATTGATGTTTCATGCATGTATTAATTCACCAATCCCTATTAATTGGGAACACACTGACCCCAGCAAAAGAGAGCCTTGCGTATCAGACATTCTTAGGAATATATAAAATTTTATTTTGT