Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22905 LG5 60309529 60311366 PREDICTED: mediator-associated protein 1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to bacterium, regulation of transcription, DNA-templated, defense response to bacterium, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, defense response to bacterium, defense response to bacterium, defense response to bacterium, defense response to bacterium, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   cytoplasm, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 60309622 3_prime_UTR_variant
A/T 60309781 3_prime_UTR_variant
A/T 60309782 3_prime_UTR_variant
A/T 60309905 3_prime_UTR_variant
G/A 60310037 missense_variant p.Ala395Val
G/A 60310357 synonymous_variant p.Ala288Ala
G/A 60310495 synonymous_variant p.Asn242Asn
G/T 60310545 missense_variant p.Pro226Thr
G/C 60310573 missense_variant p.Asp216Glu
G/A 60310870 synonymous_variant p.Asp117Asp
G/A 60310880 missense_variant p.Thr114Ile
G/A 60310902 missense_variant p.Arg107Trp
G/A 60310912 synonymous_variant p.Asp103Asp
C/T 60311187 missense_variant p.Glu12Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22905.1
MASQQHDAVFREEDMDDDDDESQEDEEFEEEDDVLAADDEENEPSPSTALAVTVAVPGSAISNGGGAPLSTPTATTIVIGDSSDPKRRRLEPIEEKKPPPPLDDSRRLFQRLWTDEDEIELLQGFLDYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFSFKSAHDQATFEISRKIWSSVAPIGENSLDDDEINPCPNPNPIIPHPNLNFSPVILKNETTSRNSAEKKTPKRPRPRSAVKVEPIDGSASNRDLNCTSNATTTATPTATATNTTATTNNNNYNSGYSNNIPSLIEETVRSCLSPVVRELVGAMGGGAFGGRGVSLNLNPTPFMNLSYGGGELVDEKWRKQQILELEVYSKRLELVQDQIKAAMEELRSGGGGV*


CDS Sequence:
>Vu_22905.1
ATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCCGCAGATGATGAAGAAAACGAGCCCTCTCCCTCCACCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCATCTCAAACGGCGGAGGCGCTCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCTCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAACTGCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAATAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCCCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCTGCGGAGAAGAAAACACCGAAACGCCCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAATCGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACAACTACGGCCACTCCTACTGCTACCGCTACCAACACTACCGCTACTACTAATAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGAGAGTTGGTAGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGAGTTTCCTTGAATTTAAACCCCACGCCTTTTATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAAAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCGATGGAGGAGTTGCGGTCCGGTGGAGGAGGAGTTTGA


Promoter Sequence:
>Vu_22905::LG5:60311366-60313366(-)
CTCTTGGCATATTTTAGTAGTTTTGTCTGGAGTAAAGACTCGAAACGGTTTTGAAGATGAGTTTGAATGTTTCCTACAGTTTTGGTCGCAGCTTTAGTTAAATCGAATTGAAACTTATTTTTTTATGACGGTTCTTTTCCTGGCAATTTGTTATTTTTTATTTTTGTTTGAATCATATTTATTCGTATCGAATTAATATACTCGAAGTTTTTCGTACAAACCGAAGATGTTAATGGAACTACTTTTTGCAGCTGTTGTTTAGCATGTCGTGTTGAATATCTAGAAAGTCGACATGTTATGTAAGAAAAAGTAAAGCAATAAAAAGTTAAAGAGAAGTTTTTACGGATTTGTAGAGTTATGGAAGATGGGACGGGGTACTAGCACCAAAACTATCTAGCTAGAGCTATTCAAGAAATAGCTCCTTCATAACTTATTAAAGTAGTCGTCATGTTAAGAAAAGGAGTCGTCATGTTAAGAAAAGGATTTTACTCTTTGGAAAGTATGAAGTAGGTTACGCTTAAAATCTCTACGGTCTAGTCAACGTATTTGTTACAATTTTATTGGATAAATTTTATCATTGAGCGACTCGGTCCAATTATATTGGATTTTTATCTGCCAAAATAAAAATTATCGTAAAGACTATATTGTATTACATGTCCAGTATAATTCACTTTCATGAATATTTTAAACAAAATCCTATCGTGATTAAATTTTATTTGTAATTTATTAACGTCCAAGATTGTAGAGTATTAAATGTTTTTTTTATCATTATGATCACTTTACGGCAATATCCCTTGGTGTATATTGTTTTCAACTTTTGCCTACAAATGCCTTAAATTGTGTTAACACCACAAGTGCTTTGAAGATACTCATTAAAGGGTGTTTTAATCTGTCATGGAATAGTTTAGAATGAAAAAAAATGTATTAAATACAAGTTTCATTTTTGAACTGTTATATAAAGTTATTAAACTATCTGTATATGTTTAAAACAAAATATACTACTAAAATGAAATATTTACGATTCTATAATGTGCCCTCACAATGCACGGTACATATTTGTTTCCATATAATGAAAAGAAAACATGAAAACAAAACAGCAGTAGGAATACAAATGGAACACGTCAAAGTAATCACTCTTCAGTTAGTCATTGTCAATTGAAAACAAACTTGAAATGAATGAAATCTGTGAGTAGAGGTTTCAACTCATTATACCATGCCGCCTCATGATCAATTTTTATGAACATAAAAGCAATGTTTTAAAAAAAACGTCATTATTAAATTTTAAGATACGATTTGTTTTTAATTAAACATCTTATACAAATAAACAGTATTGCAAGTTACAATTAGGTTAAACAAGATAATTTTTGTATCGTAATGCTTAGGATTTCTCTCTCTCTGTAGTGCGCACGTTCATATTTCAAAAGTAATAAAACAAGTATAACATCAGTAACATTTTTGTCAATAAATTTTTTAATTATAATAGTGTGTATATTTCGCTAAGTTATTTATTTTGTTTTCATTCAAAAGAAACCTTTTCTTCCTAAGAAATGTTAAAAAGACTATTTTATTGAATATACGGTCTCATTGTCAGGACCAACATATTTTCTCGTTTTGTGAACATTTGCAATGCATATTTTGTTCTTCTTAACTAGTTATTTAATCAAATTAATTTTTTACTTCCATGAGCTTTTTAATTAATACTTACTCTCATTCCATTAATATTAGAAATAATAAAATATTAAATTAATCCGTACCTGCTAAATTATATAAATATTAAGTTCATAAACGTATTGGTAAGGTTTTGTAATTATTTAAACGAAATAAATAATAGAAAAAAAATGAATTGGGTTGCGTTTGTGGAAAAAAAAGAAGAAAGTACATTCCTTGTAAAATGAAAATAGGGAATAGAAAAATGATGGCAGGAGGTTTGGTTGGTCACTTGGTCCACTAGGCTACCTAAACTAAACTAAAAACCAAAACCACCCTTCGGATTCCCTTTT


Gene Sequence:
>Vu_22905(-)
ACCATCACCAAACCAAACCAAACCATGGGTGAGTGCGTGAGCAACTGAGTTCAACAAGAAACCAAAACCCGTGACTCAGCCCACTCTTCTTGGCCTAACCACTGACCAAACCTCTCACTCTCTCTCTCTCTCTCTCCTTCCTATCAATGGCATCTCAACAACACGATGCCGTTTTCCGCGAAGAAGACATGGACGACGACGACGACGAGTCCCAGGAGGACGAAGAGTTCGAAGAAGAGGACGACGTTTTGGCCGCAGATGATGAAGAAAACGAGCCCTCTCCCTCCACCGCTCTCGCCGTCACCGTCGCCGTCCCCGGTTCCGCCATCTCAAACGGCGGAGGCGCTCCACTATCCACGCCCACCGCCACCACCATCGTCATCGGTGACTCCTCCGATCCGAAGCGGCGGCGCCTGGAGCCAATCGAGGAAAAGAAGCCTCCGCCTCCGCTAGACGACTCGCGGCGGCTGTTCCAGCGGCTGTGGACCGACGAGGACGAGATCGAGCTCCTTCAAGGGTTCCTGGACTACACCTCTCAGAGAGGATCCTCTCACCACAACGACACCGCTTTGTTCTACGACCAAATCAAGTCGAAACTGCAACTCGATTTCAACAAGAACCAGCTGGTGGAGAAGATCCGAAGGCTGAAGAAGAAGTACCGAAACGTCCTCAATAAGATTGGCTCCGGCAAGGAATTCTCCTTCAAGAGCGCACACGATCAAGCCACCTTCGAAATCTCCCGCAAGATCTGGAGCAGCGTGGCTCCAATCGGCGAAAATTCCTTGGACGACGACGAAATCAACCCTTGCCCCAACCCTAACCCTATCATCCCCCACCCTAACCTTAATTTTAGCCCCGTAATTCTCAAGAACGAAACGACTTCCAGGAATTCTGCGGAGAAGAAAACACCGAAACGCCCCCGGCCTCGATCGGCGGTGAAAGTCGAGCCAATCGATGGATCCGCGTCGAACAGAGATCTTAATTGTACTAGCAATGCTACAACTACGGCCACTCCTACTGCTACCGCTACCAACACTACCGCTACTACTAATAATAACAATTATAACAGTGGTTATAGCAATAACATACCGAGTTTGATTGAGGAGACGGTGAGGAGTTGTCTGTCGCCGGTGGTGAGAGAGTTGGTAGGAGCGATGGGAGGGGGAGCGTTTGGTGGGAGAGGAGTTTCCTTGAATTTAAACCCCACGCCTTTTATGAATTTGAGTTATGGTGGTGGAGAATTGGTGGATGAAAAATGGAGGAAGCAACAGATATTGGAGTTGGAAGTGTATTCGAAGCGGTTGGAGCTGGTGCAGGATCAGATCAAGGCTGCGATGGAGGAGTTGCGGTCCGGTGGAGGAGGAGTTTGACCACACACGCCTTTTAGTTTGTTCTTGGTTTCCTTTTTGTAGTGAGTGATTGGAGTTCTCCTCTTCATGTTCACTTCATCACACCAAGATTTGCCTCGTAATTTGCTTCATACTCATAGAGCTTAGCACTTAGCTAGTAACTAGTAAGTAAGTGGTAACCAGTGTTTTATTTATCTCTGATTCGGTAGAGCATTTGTCAATTAAAATAAAATGTTTACATTTTAGTCCGTTTTATGTTCCTTTAATTTTCAATGGTCTCATACATGTACAGAACAGATTGAAATAATTGGTCCGGAGTGATGGCTTTGAACCATGATATGTTGTAAAAGATGCAAAAATTAGTGGCTTCTTAATTCTGGAATGATCTTCCTCACCACTTTCTTGTTACAGAACTTTAACTATCTTTCGTAGTATTGTAATTCCATCCATTGTAAAATTTGCCACTTTAATATCTGAAAGAGATTCTGC