Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22674	LG5	57866724	57867428	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	57866724	splice_region_variant&stop_retained_variant	p.Ter235Ter
G/C	57866805	missense_variant	p.Ile208Met
G/T	57866864	missense_variant	p.His189Asn
G/T	57866893	stop_gained	p.Ser179*
C/T	57867357	synonymous_variant	p.Arg24Arg
T/A	57867365	stop_gained	p.Lys22*
A/C	57867368	missense_variant	p.Tyr21Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22674.1

MTKRKVKLAFIENDSARKTTYKKRKKGMLKKIEELSTLCGIDACAIVYGPDDHEPEVWPSHCEVQKVVGRFRNMPAVEKIKKMVNQESFIGQRIQKGNQQIMKLRKENAEKEFTLFMFQCLTEGRVLPDENNMTLADLNVLSSVIEQNLKDIDKRLQTLNVNQIQPTQQPEMQTSVFQSQLKTTSYQPHLQMALMSSGHGLDMDVNPIQRLLFMNLFNGNRDETIMPPFGDPNL*

CDS Sequence:
>Vu_22674.1

ATGACCAAGAGAAAGGTGAAACTTGCATTCATAGAAAACGATTCTGCAAGGAAGACAACATACAAGAAAAGGAAAAAGGGAATGCTGAAGAAGATCGAGGAACTCAGCACCCTTTGTGGAATTGATGCATGTGCTATAGTTTATGGTCCCGATGATCATGAACCAGAGGTTTGGCCATCCCATTGTGAGGTCCAAAAGGTGGTGGGAAGGTTCAGGAACATGCCTGCAGTGGAGAAAATCAAGAAGATGGTGAACCAGGAGAGCTTCATAGGACAAAGGATCCAAAAGGGTAACCAACAAATAATGAAACTTAGGAAGGAGAATGCGGAGAAGGAGTTCACCTTGTTCATGTTTCAATGCCTTACTGAAGGTAGGGTTTTGCCAGATGAAAATAACATGACCTTGGCTGATTTGAATGTCCTTTCATCAGTGATTGAACAAAACCTTAAAGACATTGATAAAAGGTTGCAAACTCTGAATGTTAATCAGATACAACCGACTCAACAACCCGAGATGCAAACATCAGTATTCCAATCGCAGTTGAAAACAACATCGTACCAACCGCATTTGCAAATGGCACTTATGAGTTCTGGACATGGGTTGGATATGGATGTCAATCCCATCCAAAGGTTGTTGTTTATGAACTTGTTTAATGGTAATAGAGATGAGACAATAATGCCTCCATTTGGTGATCCTAATCTCTAG

Promoter Sequence:
>Vu_22674::LG5:57867428-57869428(-)

TATAGAAAATTATAGCAATCAATACTATATATGTGTACATGCATAATAAATTCTGCATGTATTAAAATATCAATGTTTATTTTTTATTAATGGTTAAACTACTAGTTTTAGAGGAAGTAAAATTATAGTTATCTAAATAGCAAATCCATTTTTGGTTATGAACAATTCGTTTTGGTACTATTTATCACATTGAAAATAAATTTCTAATAACCTTTTCTTCTTAAGAATGAAATTTTATTTTTTTATCCATGAATCAAAGAATCGCATTTCTAAAATAAAATATTACTTTATCATTTATCCATTTTTTCACTTCTTGAAGCAAGGAACAAAATCGAAATTTTTAACATTATTTTAAATTTTCGTGCGTCTAATTGCTCGTGTCAATTAACGTTAGTAATTGTTGTCAGAATAACTTGTAAGCAATATAATACCACATTTGTAATGAATGCTTAGTCATGAATAAGAATGTTCAAGTAGTTAAAAAGGTGACAAATGTTGGAAGTCCTACATCGACTAGAGATAAGGCAAATTTATAATATGTATATAAATGAGTGCAAACATCACCTTATAAGTCGATTTTGTGGTATTAAGTTAAGCTTAAAACTCACTTTCTAATATGGTATCAGAGTCATGGTTAGAGTCTATCCTAACGAGTTATATGTGGACATTCTATTATTCTATTCCATCCGTTATCGGGCCATTATCGAATCACCCAATTTCTAGTATCATGCAGGAGATGTCTATACCTCGACGTGAAGGAGGTGTGTTGGAAGTTCCACATCGACTAAAGATAAGGCCGATAAGTTAGGATTAAAACTCACTTTCTAATAACAAAAATTGCAAAGTTGAAAATAAAACCAAAATGCAAAAAAAGAATAAGTTGTGACAAAATTCTCTAAAATCATGTAATATTAATGAATATTACTAATTTTCAGCATAGATGTTTATTACTAATTTCAGCATAGATGTTTATTTCAATTTAGAACTTTGAATTTTGAAAAGTAATTTTTCATTAATATTAATGAAAATAAACTGAGTATTATAGATTGAATTTATGATTTTTCAATATTTGAATTAATTTTCTAAAATAAATTTTTAGACTTTTGTTTAAATAATTTTCTCCAGTGTTAAAAATATTCCATTTTCAAAATATGATAAGCCAGGTTGAATAGTAGTATAGAGATCTAAAATTATAAGTCATCGTAATGTGAAACATTAATGATATATTCATATTTCAATTTAAAATATATAAACCTCATCTTATAAACAAGTTTTATGGGATTGAGTTAGACTTAAAATTATCTACGCATGAGTATATATACTTCAGCGTGATGAGAGTGTATTGAAAATTCCACATTAATTAAAGATAATTGAGAATTTAGAATATATAACTGGATATAAACTTCACTTTATAAGAATTTGTGAGATTGAGTTAGATTTCCTTAACACAAATCATTATAAATATATTATATGAAGAATCTCACATGATACCAACGTTTAAAAATGCTGATAAATTTTTAAATCTATGAATCCATGAAATTCAATTATGAGAATGAGATTTTTTGACATATATCTCCCTTTTATACCAACTCAAATATGTAAAAAATCAGATTTCAAACAAACTAAAATATAAGATAATATTACTTATTAATTAATGTTATTATATGAACACATTTATTTAATTTTTCTTTTTTTTCATGCTTATAAAAGGCTATGTACACACCAAAACTAAGTAATTGAATTTACTCATTTTTTTCTTCCATATTAAATATCATTAAAGTCCCAGATTTTTCATATCCTTCATATATGGAATGACATTGAAAGTGAGATTGAAAAGTGCTAAACCAGTTGGAACTTTCACTCAAACGCAACAAGGATTACTGCAAAACAAAACCATGTATGTAAATAAAATTGGTCTATATAAGGACATTGTTGGTAGAAAATCTACAACAAGCAACTCTTTTCAACTGGTTTATGTTTCCCTTTTTCTGGTCACCATC

Gene Sequence:

>Vu_22674(-)