Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22671 LG5 57848028 57848564 PREDICTED: agamous-like MADS-box protein AGL80
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 57848049 synonymous_variant p.Val172Val
G/A 57848069 missense_variant p.Pro166Ser
T/A 57848096 missense_variant p.Thr157Ser
C/A 57848097 missense_variant p.Trp156Cys
C/A 57848098 missense_variant p.Trp156Leu
G/A 57848301 synonymous_variant p.Val88Val
T/G 57848436 synonymous_variant p.Ala43Ala
A/T 57848450 missense_variant p.Cys39Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22671.1
MTGRKVKLAFIANDCARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSPFDQEAQIWPSESGVQNVVERFRTMPEWKKHKMGNQESVMEKSIMKGKRKIAKLEEENKEMEITMFMFQCLDTTRVQHQQNMTLEDLNLLSSVIEQKLNDVSRRLDWTDVTEVPYQPQIQTFVDTNLKL*


CDS Sequence:
>Vu_22671.1
ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGGCACAGATTTGGCCATCTGAATCAGGTGTGCAGAATGTGGTTGAAAGGTTCAGGACTATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAGAGTATTATGAAGGGTAAAAGGAAGATTGCGAAACTTGAAGAAGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTGATACAACTAGGGTTCAGCATCAACAAAACATGACTTTGGAAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAACTGAACGACGTTAGTAGAAGGTTGGATTGGACAGATGTTACTGAGGTACCATACCAACCCCAGATACAAACATTTGTGGATACTAATCTTAAACTCTAA


Promoter Sequence:
>Vu_22671::LG5:57848564-57850564(-)
TTAATGGGAATCTAAACTACAAGTTATGTGAAATTAATATATCTGAAATTACAAAAACCTTTTATCTGCTCATGGTGACTTTATTGAATATGATCACAATATATATGAGAAAGATATTCCTAAAATGTAATGAAATTCTCCTTGCAAGATAGTGCTTTGGAATGGCATTAGAGCAAACTTGAATCATATTCAAGACAACATAAAGATGGGTTTATCAGATTTTGGAAGGACAAATGTTGTACTCCTTTTATATATCACCATCTTCTTAACTATAAGCTCTAAGATGGAATTTTATATATATAAAAACAAAAATATAACAAATGCAAACAGTGAAACAGTCTAGATTATTGTTGCTTTCTAGTAATTTTTGTTTACTTTAGCTTAGACAAAATAACAATACTTCTTTGGATTGAGCATAAACATCATATGAACAGAGATTGGAGCATATAATTGGTTCAATCACCTCTTAAGTTCTTAAAATTGTATATAAATATTTTTATTGATTCAACTTATCTTCTTATTTTATTGTGTCCTATCAATTAATACATGTTTACTTCTCTTTCTTAGTGTTTAAGTTGGATGGAACCATGACTACACATAAAACAAAAATTAGAGAACAAACAATAACTAATACTATGTTGCTTTAGATTTAAAATTCAAAGAATAAATCAAACCAATTCAATACTGTTTAAATGAAAGGGACCTTAACTTATAATAGATTTGGCTAGTATTCTTTTCTATAAGAATTAAATATGTTTTCCATTTTAAAATTATTATAAAAAATATGGATCGTTCCTGATTCTACCATATCTAATAATCTTATATCACATAGGAATTAAGATTAAGAAAAGTTTAAATACTTATTTTTCTTTTTATCTTTCTAAATGTCTTTTAAAAAAAGAAAAACGGTGATGAAGTTCCAAGTTTCAAAATCAACAACACTTTGTATGCGTCAATTGATTCTAAGGATGTTAGTACCGATATCAAAACATCACGTCCAACGTCTAATGATCCACATAATTTAGAAGTGAATATCAAAATCAAATTAAATAGTTTTTTTTTTTCAGTTTACAAATTTGAGACTAAATTCTACTTTTCTTTTTTATAATGTAAAATGTTACCTAAAAAGTTAAAAATTGATCCAAGTAAAAATATTTTATGTCTATATATGTATGACGCTTCATCACTGAATTTAGAAGTCTTTTTCTATGTTGGTTCACATCACTTGCATTTGTTATATATATTTATTCGGCTTTATAAAATTTACAAAACGTCACATATATTTCCATAATGGATTAGATGAGAATCACATGCTTTTAGGAAGAAAAACTTCTAAAATCATGTTTCTTAAAATGGACACAAAATGAATACATTTCATGGTCTATTTTAAGTATATAATAGGAAGAGCTTTGCTCTAATACGATGACAACTGTTAAAATGCAATTCATAAATTAAAAAACTATGTATCCAAGCATAAAAATTAAATGACGAGGGTTATATATACAAAACCTGTTGCCATTTAAAAATGACAAACTTTAAAATACTATTAAAGTTGTAAACTATCTATATATGTATAAAATTAAATATAAGAAAATACTTTTTAATATATTTCCATTCTAGTAAATTTCAAAATATGCCGGATATAATTCATGTATGGAATGAATTTAAAAACTGTGTAAAACCAGATGACATAATCAGATGTTAACCGTTATAGTACTATTAAAAAATTTAGTCTATCAATATATATCCATCAAATTCAACAATGAAAATAAAGATTTTCTATACATATACACATATCAGAATTGTTTTACCAACTCAATGGTAATCTACTATGTCATGCATAATGTAGATTTTGCAAAGTAATTAAATATCATTAAAGGTTCCGATTCTCTGTATCTTCTATGCATGTGAAATCTGAATGTGCAAAACTAGGTATTTAACTGGTGGCAGCAGAAACCAGAAGAAAATCACACATTTTACCATTTTCTTTTTCTCATAAC


Gene Sequence:
>Vu_22671(-)
ATGACAGGGAGAAAGGTGAAACTGGCATTCATAGCCAATGATTGTGCCAGGAGGGCATCGTATAGAAGAAGGAAGAAGTCAATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGAGTAGAAGCATGTGCCATAGTGTATAGCCCCTTTGATCAAGAGGCACAGATTTGGCCATCTGAATCAGGTGTGCAGAATGTGGTTGAAAGGTTCAGGACTATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTCATGGAAAAGAGTATTATGAAGGGTAAAAGGAAGATTGCGAAACTTGAAGAAGAGAATAAGGAAATGGAGATTACCATGTTCATGTTTCAATGCCTTGATACAACTAGGGTTCAGCATCAACAAAACATGACTTTGGAAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAACTGAACGACGTTAGTAGAAGGTTGGATTGGACAGATGTTACTGAGGTACCATACCAACCCCAGATACAAACATTTGTGGATACTAATCTTAAACTCTAA