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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22657 LG5 57692004 57694657 PREDICTED: CBL-interacting serine/threonine-protein kinase 11-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/A 57692640 synonymous_variant p.Gly348Gly
C/A 57692642 missense_variant p.Gly348Trp
A/T 57692644 missense_variant p.Val347Glu
A/T 57692693 missense_variant p.Leu331Met
A/G 57692700 synonymous_variant p.Gly328Gly
G/T 57692945 missense_variant p.Arg247Ser
G/A 57692957 missense_variant p.Pro243Ser
G/A 57693072 synonymous_variant p.Cys204Cys
T/A 57693158 intron_variant
A/C 57693159 intron_variant
T/A 57693178 intron_variant
T/G 57693341 intron_variant
A/G 57693457 intron_variant
A/T 57693653 intron_variant
T/A 57694094 missense_variant p.Lys119Met
C/T 57694096 synonymous_variant p.Arg118Arg
G/A 57694099 synonymous_variant p.Ser117Ser
C/T 57694126 synonymous_variant p.Ser108Ser
G/A 57694138 synonymous_variant p.Phe104Phe
T/A 57694145 missense_variant p.Glu102Val
G/A 57694150 synonymous_variant p.Gly100Gly
G/A 57694155 missense_variant p.Arg99Cys
G/C 57694159 missense_variant p.Phe97Leu
A/C 57694161 missense_variant p.Phe97Val
C/A 57694164 missense_variant p.Asp96Tyr
A/G 57694166 missense_variant p.Met95Thr
C/T 57694194 missense_variant p.Ala86Thr
G/C 57694207 synonymous_variant p.Leu81Leu
G/A 57694210 synonymous_variant p.Arg80Arg
G/A 57694216 synonymous_variant p.Ile78Ile
C/A 57694238 missense_variant p.Ser71Ile
T/A 57694267 synonymous_variant p.Gly61Gly
C/T 57694269 missense_variant p.Gly61Arg
C/T 57694284 missense_variant p.Gly56Arg
G/T 57694287 missense_variant p.His55Asn
T/A 57694323 missense_variant p.Ser43Cys
C/G 57694324 missense_variant p.Gln42His
A/T 57694467 5_prime_UTR_variant
C/G 57694472 5_prime_UTR_variant
C/T 57694496 5_prime_UTR_variant
G/A 57694500 5_prime_UTR_premature_start_codon_gain_variant
A/T,C 57694518 5_prime_UTR_premature_start_codon_gain_variant
C/A,T 57694533 5_prime_UTR_variant
C/G 57694539 5_prime_UTR_variant
C/T 57694540 5_prime_UTR_variant
C/T 57694544 5_prime_UTR_variant
A/T 57694545 5_prime_UTR_variant
G/A 57694572 5_prime_UTR_variant
G/A 57694575 5_prime_UTR_premature_start_codon_gain_variant
A/T 57694577 5_prime_UTR_variant
C/T 57694587 5_prime_UTR_variant
G/A 57694591 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22657.1
MPEIEQVAMEDTALFGKYELGRVIGCGAFAKVHYARNVQTGQSVAVKIINKKKIHGTGLAGNVKREITIMSRLHHPNIVRLHEVLATKNKIFFIMDFVRGGELFGKISKGRFSEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVTDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILSKKGYDGAKIDVWSCGVVLFVLSAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLAKLLDTNPETRITVDGMLRDPWFKKGYKEIKFHEEDYVSGSGIGYGPKDERIMNLNAFDIISFSAGLDLSGLFGDAGEGDRLVTQESPEKVLEMAEEVGAAADMTVRWKKECGVELEEFNGRFGFEVEVYRLTAELTVVEARKRCGDGVTFKSVWEEKLKPLLLGGATTSYNSEDEEQIDEQQNQELQQPESQQVAGD*


CDS Sequence:
>Vu_22657.1
ATGCCGGAGATCGAGCAGGTGGCGATGGAGGACACTGCCTTGTTCGGAAAGTACGAGCTCGGGCGCGTTATCGGGTGCGGCGCCTTCGCGAAGGTGCACTATGCGCGCAACGTGCAGACGGGACAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAGATACACGGAACGGGTCTCGCCGGAAACGTGAAGCGTGAAATCACTATCATGAGCAGGCTCCACCACCCCAACATCGTGCGCCTCCACGAGGTTCTCGCTACCAAAAACAAAATTTTCTTCATCATGGACTTCGTCCGCGGCGGAGAGCTCTTCGGGAAGATCTCGAAGGGTCGCTTCTCGGAGGATCTCAGCCGGAAGTACTTCCACCAGCTCATCTCCGCCGTCGGCTACTGCCACTCGCGCGGTGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCCTCGATGAGAACGGCGATTTACGGGTCACCGATTTCGGGTTGAGTGCCGTCAGGGACCAGATCCGACCCGACGGGTTGCTCCACACGCTTTGCGGAACCCCTGCCTACGTGGCACCCGAGATTTTAAGCAAAAAAGGTTACGATGGTGCCAAGATTGATGTTTGGTCATGCGGGGTCGTTTTGTTCGTTCTCTCAGCGGGTTACTTACCGTTTAACGATCCGAACTTGATGGTAATGTATAAGAAGATTTACAAGGGAGAGTTCCGGTGCCCGCGGTGGATGTCCCCGGAGCTCCGGCGCTTTTTGGCGAAGCTGCTGGACACCAACCCGGAAACGAGGATTACGGTGGACGGCATGCTCCGTGACCCGTGGTTCAAAAAAGGGTACAAAGAGATCAAATTTCACGAGGAGGATTACGTGTCTGGGTCGGGTATCGGGTACGGGCCGAAAGACGAGAGGATAATGAATTTGAACGCTTTTGACATTATAAGTTTCTCTGCCGGTTTGGATTTGTCGGGGCTGTTCGGGGACGCCGGCGAGGGTGACCGGTTGGTTACGCAGGAGTCGCCGGAAAAGGTTCTGGAGATGGCGGAGGAGGTGGGGGCGGCGGCGGATATGACCGTGCGGTGGAAGAAGGAGTGCGGGGTGGAGTTAGAAGAGTTCAATGGAAGGTTCGGGTTTGAGGTGGAGGTTTACCGGCTGACGGCGGAGCTGACGGTTGTGGAAGCCCGGAAGAGGTGCGGCGACGGCGTGACGTTTAAAAGCGTTTGGGAGGAGAAGTTGAAGCCTTTGTTGCTTGGAGGTGCGACGACGTCGTATAACAGCGAAGATGAAGAACAAATAGATGAACAGCAAAATCAAGAACTACAACAACCTGAGTCGCAGCAGGTTGCCGGTGACTGA


Promoter Sequence:
>Vu_22657::LG5:57694657-57696657(-)
TTATTATTGTATTAATTTTAGTATTTAATCTATGTTACACCTTTGTCGTTGTTTAATTTTTGTACAGCCTCTTCTTCAAAGTGTGTTGTTTAATTATAGGGTGTACATTGTTTTTAAGTTTTACATATTTATGTCTTACATGTTAGTTTTCATTTTACAAATGTAGCTTCAGTTGGCTTCTTCTAATATTGTGTGACTATGTATTACTATGACTTCAACTTCTATTTCAGTTTCAATTTTAATTAGTAGGCTTATTTGTATGGTAAAAATTATAATCAAATTATGATTTGTAATTATTCATATTTTAATGTTATATCCATGATTAGTGTTGTGAAAATGAATAATTCAGTACGATCCATCATAGACCTAGTCTACCACAGGTTGTGGAAATAACTAGTTGACTTACTGATTTACTTAATTACATTTTTTCAAATAAAAAAAATTACAATTTTCAAATCTAAATAAATTTCAGTCTAAAATAATGTTAAACTTCAAAGACAATTTAAAATAAAAAAATATCATACAATTCAAATGTAATTAAAAAACAAACACAAAAAGTGAACAAATAAGTTTCTACAATTGATCATTTTTGTGTCACTTATCCATTTATAATATTAGAATCTTGAATAGATAAATCCATAATATTTTCTTCTCTGAAAATTTATTTTTCTTTATTCTCATCTACAACATAATAAAAAAAGTGTTAACTAATAATATTGAAATACAAAATAATAAATAATTAAATTAAATTAGGTAAGCTGGTGAACGAACTTGACTCGTCACGAGTTCAACTCAGATAAGTTGGATTTTTTTTTTCAAACTCAACTCAACTCAAAACCATGATAGACGGGTTGAGCTAACACTATCTATAACTACCTAGCTTTTATAAACTTATATATATTATAATTTTGATACTTTAACTATGATTCAATGAAACATGAATATAATTAAATTATATGTTGATTGTAATTGTAATGAATTCTGAATGGATTAAATGAGATGTTGAATAATTATATATAAATATTATGTATATAATTTAAGCAGAGGAAATGTGAGTTATTAAAAACAATCAAATTGGTCGTGTATGGTATATGTTATTAACAACAACTATAGCTCACACTTTCTCTAATTTTTTCTTTTTATTTATCTTAGCATCTGCTAGTCCACGCTTCCTCTACAATTATTTTATTTTTTATACGTCGACCTACCCTACGCTTCACGCGACTTCAGAAAGTGTCCACAGTTGGCCGACACTATTCCCTTACATTCTTGCAATATCATGTTCAATATATTTGTTTAAGTATAGAACATATGTATTTTTATCTATTTGTTGATAGTTGTGTTCTAATATTCTTTATTAGTCGTATGCGACATGATTTAATTCAAGATATATCACTGTATAGCTTCTAAATTTTTAATAATAAAACTTTTTTTAATAGAAATCCAAATTAATAATGTATTGTGAAAGCCGCTGGCGCTATATTTTTCAGTAACTGTTACTACATTATTATCTTTCAAGCAAACACGTTTTTCAATTTACCATTTGGCGGCAATGTTTTTGGAACTCCATTTTGTGGTTTGGAAAATTTCAGGTTCCATTTGCATTATTGACCTACCTGCACATTCAAACCTTAGAATTTATTTGACTCTCAAGATTATTGACCACATTATTTTGAAAAAAAAATGTGTATAATAAATCATGCAAACTGAGATGGTCAATTTTAACTGTTAGTTAATCTTATTATATCACTGCAACATGCAACAATAAAATGAAGTACAATGGTAAATTCTAAATTGAAAAGATGAAAAAGTACGTAGAAAGCATATTATTTTATTCCTTTTTTATTTTTCAAAATACAAAATCCAACGGCTAACAATAACTCAGCACATTACACCCGCTGGGCAGTGGTTGGGACACGTGTCAAAATTACATTACACTGTGTTGAAGCACGTGTGTCCCACAACACCTTACAATCCTCTGTCTTCTCGGAACTCCTCCT


Gene Sequence:
>Vu_22657(-)
AACCCACAATCAAAAAACTGAAAATCCTTATCATATTTCCCCCAAAATCGCCCCATTTGCATTTACCCACGAAAATCGAATTCTGCGATTGACCCATTTCAATTCGTCCCTCTGATCGGGTAACGCGTCCTTCAATTTTTCTTCCAGTGGTTTCCCCCGTCGTTCAGAGCTAGGGTTCGATCTCTGGTGCTGCACCGCCGGCGCAACCATGCCGGAGATCGAGCAGGTGGCGATGGAGGACACTGCCTTGTTCGGAAAGTACGAGCTCGGGCGCGTTATCGGGTGCGGCGCCTTCGCGAAGGTGCACTATGCGCGCAACGTGCAGACGGGACAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAGATACACGGAACGGGTCTCGCCGGAAACGTGAAGCGTGAAATCACTATCATGAGCAGGCTCCACCACCCCAACATCGTGCGCCTCCACGAGGTTCTCGCTACCAAAAACAAAATTTTCTTCATCATGGACTTCGTCCGCGGCGGAGAGCTCTTCGGGAAGATCTCGAAGGGTCGCTTCTCGGAGGATCTCAGCCGGAAGTACTTCCACCAGCTCATCTCCGCCGTCGGCTACTGCCACTCGCGCGGTGTCTTCCACCGCGACCTCAAGCCCGAGAACCTCCTCCTCGATGAGAACGGCGATTTACGGGTCACCGATTTCGGGTTGAGTGCCGTCAGGGACCAGATCCGACCCGACGGGTTGCTCCACACGCTTTGCGGAACCCCTGCCTACGTGGCACCCGAGATTTTAAGCAAAAAAGGTTACATGCATAAAAATTTATATAAACAACTCCTTCAAAATAAACAAATTAAGTTTTTGTGATGATTTCTTGATTCTTCCCCGCGTAGTTTTGAAAACTAGTCCTTTCACGATATTAATGTGTGTTTTGAATTATTAATATTTTTTAAATGTTTGCTTTAATAGTTATATCATATATTATATTATATTATTGATAAGTTGTCACTAAATTTTATACAACTTTTTATTTCAGAGATTTGTATCAAAGACTTTCTAGTTAAAAAGTTCTTTTCCAAGAATTTCAGATCACAAGCTTTTTTTCTTTTTCTTTCAATTTGTATTAAGGATTTAAGCAATTGTAACCACTTAATTAAGGTTTATTTGTTTACTAACCAAAAACCACTTTCACAATGTTGGCCACAATATTATTTAACGTTTTCTACCAACATTTTGAATTATAGTCACAGTAGTAGTTTATTGCAATGACCACGATTTTTAAAATTTTACATCATTTGTAGCGTTTTACAAATCTCTTAGATGTTCCAATCTTGCTACTACAACCCCAATTTCATCTTCAAAGTATTTTATAATCATAATAAATAGAAAAAATATACAACCTCAAATGGTCAACAAAATTCTCTATTGTCAAAAATCAACAAAATTATATCATGGGTATTTTTGCAACATGGATTTACACAGAATTATTTTAAATTTTTATTTTTTCTCTTCATTTATTATTTTTATTTTCGTAGTTCTAAAAGTGTTTGTTCAAAATCACATTTTTTCAGGTTACGATGGTGCCAAGATTGATGTTTGGTCATGCGGGGTCGTTTTGTTCGTTCTCTCAGCGGGTTACTTACCGTTTAACGATCCGAACTTGATGGTAATGTATAAGAAGATTTACAAGGGAGAGTTCCGGTGCCCGCGGTGGATGTCCCCGGAGCTCCGGCGCTTTTTGGCGAAGCTGCTGGACACCAACCCGGAAACGAGGATTACGGTGGACGGCATGCTCCGTGACCCGTGGTTCAAAAAAGGGTACAAAGAGATCAAATTTCACGAGGAGGATTACGTGTCTGGGTCGGGTATCGGGTACGGGCCGAAAGACGAGAGGATAATGAATTTGAACGCTTTTGACATTATAAGTTTCTCTGCCGGTTTGGATTTGTCGGGGCTGTTCGGGGACGCCGGCGAGGGTGACCGGTTGGTTACGCAGGAGTCGCCGGAAAAGGTTCTGGAGATGGCGGAGGAGGTGGGGGCGGCGGCGGATATGACCGTGCGGTGGAAGAAGGAGTGCGGGGTGGAGTTAGAAGAGTTCAATGGAAGGTTCGGGTTTGAGGTGGAGGTTTACCGGCTGACGGCGGAGCTGACGGTTGTGGAAGCCCGGAAGAGGTGCGGCGACGGCGTGACGTTTAAAAGCGTTTGGGAGGAGAAGTTGAAGCCTTTGTTGCTTGGAGGTGCGACGACGTCGTATAACAGCGAAGATGAAGAACAAATAGATGAACAGCAAAATCAAGAACTACAACAACCTGAGTCGCAGCAGGTTGCCGGTGACTGAAAAAAAAATGGAATTGGTGGGTTAAAAAAATTAAAAAAAGAAAATGAAAATGTACAAAAGTGAAGAAAAAAAAGACAACATTATTGTGTTAGAGAAGATGGAGTTGGAAGGTGCAACTAGCCATCTTAACAGGTAGTGATTAAGTATTTTTTTTTCTGTTTTGTATATTATCATTGTTATTATTAATGAATAAAAAAGGAGTGAACTATTTTTTAATTTATTTTAGTGGAAGGGACTCCAATTAGCTCCTTATTTTAAGGGTATATGGAATTGAATTTAAGTGATGAAAAAGCATTGTCCACGATAATTTGTTTGAACTTTGTTGTTTGACATTGT

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