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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22635 LG5 57438854 57441831 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   tRNA threonylcarbamoyladenosine metabolic process, protein phosphorylation, protein phosphorylation, tRNA threonylcarbamoyladenosine metabolic process, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   is active in   EKC/KEOPS complex, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
C/T 57438861 3_prime_UTR_variant
A/G 57438905 3_prime_UTR_variant
G/C 57438929 3_prime_UTR_variant
T/A 57438963 3_prime_UTR_variant
C/T 57439073 upstream_gene_variant
G/C 57439074 upstream_gene_variant
G/A 57439149 synonymous_variant p.Ser207Ser
C/T 57439223 upstream_gene_variant
T/A 57439806 upstream_gene_variant
A/G 57439815 upstream_gene_variant
T/A 57439835 upstream_gene_variant
A/C 57439847 upstream_gene_variant
T/A 57440016 upstream_gene_variant
A/T 57440036 upstream_gene_variant
T/A 57440248 missense_variant p.Lys98Ile
C/A 57440252 missense_variant p.Val97Phe
A/C 57440393 upstream_gene_variant
G/A 57440402 upstream_gene_variant
T/C 57440719 upstream_gene_variant
A/G 57440726 upstream_gene_variant
A/T 57440759 upstream_gene_variant
T/C 57440984 upstream_gene_variant
G/A 57440991 upstream_gene_variant
T/A 57440996 upstream_gene_variant
T/C 57441112 upstream_gene_variant
T/C 57441144 upstream_gene_variant
T/G 57441154 upstream_gene_variant
T/G 57441210 upstream_gene_variant
T/C 57441267 upstream_gene_variant
G/C 57441303 upstream_gene_variant
T/G 57441327 upstream_gene_variant
C/A 57441370 upstream_gene_variant
G/A 57441385 upstream_gene_variant
T/C 57441490 5_prime_UTR_variant
C/A 57441533 upstream_gene_variant
G/C 57441558 upstream_gene_variant
A/C 57441589 upstream_gene_variant
A/G 57441704 upstream_gene_variant
A/G 57441796 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22635.1
METEADSRDTSLILLKQGAEARVFESSFVGRKSVVKERFSKKYRHPALDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDHVLHTLTFEYVTGSSVKDVFLEIGSRGTDKEWLDNIASQIGEAIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERSLISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG*


CDS Sequence:
>Vu_22635.1
ATGGAGACTGAAGCTGACTCAAGAGATACTTCACTCATTCTGCTCAAACAAGGAGCTGAGGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAGCTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGTGTTTGTACTCCTGTGCTGTATGCTGTGGATCACGTGTTGCACACTTTAACATTTGAATATGTTACTGGCTCTTCAGTCAAAGATGTGTTCCTTGAAATCGGGTCACGTGGGACTGATAAAGAGTGGCTGGACAATATAGCATCCCAAATTGGTGAAGCAATTGGGAAGTTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTGTTGAAGAGTGATACCAAGCAGTTGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTTCCAGAAGATAAAGCTGTTGATTTGTATGTTCTGGAAAGATCTCTTATCTCAATGCATTCATCATGTGGGAATGTGATGGATCAAATTCTTGCTGCATACAGGAAGTCGTCAAAACAGTGGTCATCCACATTAAACAAGCTAGCACAAGTGCGACAAAGAGGGCGGAAGAGGACCATGGTTGGATGA


Promoter Sequence:
>Vu_22635::LG5:57441831-57443831(-)
CACTCTCTTCTTCCTCATGTCTCTAAAACACTCCAACCCATCTTCAAAAAGTCCATTTTGAACATACCCCATTATCATAGTACTCCAAGAAACAACATCCCTTTCAGGCATTTCACCAAACATCTTCTCCGCAACCCGAACATCCCCATTTCTCACTGCACCAGCCAGCATGGAGTTCCACGTGACCACGTCGCTGCAAAGGGCATCTTCCTCAAACACTCTCTGGGAAGAATCAGCATCACCACACTCGAAATAGAAGTGAATCAGAGAGTTCCGGACAAACACGTGGCAAGCATAACCGAGCTTGATCACGTGCACATGAACTTGAACACCCAACCTGTTGTTGTTTACCTTGATTTTTAAGTTCTTGGAGCAGGCATGGAGCAGGAAGGTGAAGGTGTGCTGATTGGGGTTGAGAAAACGGCGTCGCATTGCGGAGTACAGAGAAAGAGAGAGAGACGGCGACGAGTTGGCTTTGGCGTGGCAGCGGATGAGGGAGTTGAAGGCAAATACAGTGGGGAACGGAATTGAGCTGAAGAGAGAGAGTGAGTATCGGAGAGGGAAAGGAACAGTGGAGGAGAAAGAAAGTAGAGAGAGAAGGTGAACGGTGAGACGAGCATGGCCCCAAACGACGACGTGTGCATGGGTTTGCTTGATTTGGGGCAGGGAAGGTTGTGGTGCCAGATAACGGAATATTGAAGCTTGAGAATTTGAAAGAAGGGGTTTGGTTTTATTTCTCAACATAACAGATTTGTTCTTCTACCGTAACATAGGTAACACTCTTATGCTTCATTCTCTAATAAGGTTGAGTGTATCGGAGTGGACATGAACATTGGATCAAGTAAAAATCCAAATCCAATGCCAACCATGAAAACTGCAGCACCAAACAATACCTCCACCACACTTTTCCAACAAAAAATCTCTCTCAAAACTCTTTCAATGCAATGAGAATGGAAGAAGGGAATACCAGACCACAAACTACACACGAGAAAACACAAAATGAAAAAGGTGAAAGGAAGATGTGAAGGGATACATAAACAAGTAACTATAAAACTGGTCGAGTTATTAAATAAGTTGGTTTTCATTTCATTTTTACTAAATCTCATTAATCAGAAGGTAAATGCGGAACTTAAAGATGTAGGGTGAAGTCCTTGGAGGTACAGGGTGAAACCCCTTCTGTAAGTATGAAAATGTATTTGATTTTCTAAACATTGAAACCCTTACCTCATGTATATTATTATGATTTAATCAAAGTTGGATCATATCTGTTTGCTTGGAATATAGACAGTCTCAGCTACAACTGTTGGACAAGTTCAATTAGTTTATATTTTTATTCAATCACATAAGAAAGCAAAACAAGGACAAGCCTATTCATTTAATTTTAGTTTTTAAAAATCACTACAGTGGCTCATCATGTGTTCATCAAACCATCATATTAATAATAAAAATGAAAACTACATAAATTTAATTTTTCCCATATGAAAAGTTCCGATAAAAGTGGGTCTTTATTTTTAAATATATATTAGAAATTTTGTATACTGCAAAAGTTAAACAATCTTACCCAATCCAAAACTACCTCTTATTTTGATAAGAATTTGAAAAATATATATAAATTTTAGATGACTATAAATACTTCACATTTTAATATAAGTAAATTATAATGTATATAAATAAGATATAGACCTTAACTTATAAAGTTAGATTTATAAAGTTCATAAAATGTTATAAATAGAATTTATTATAAACTTATTTTAATGAAAATTTCTTCTATTTTCGGTGTGAACGAAACTAAATAAAGATATGTGATATGTTTTTCAAAGGCTTTTTATCGTAGAAACACATTTTTTTAAGAATTTTAAATCCTCTGAATTGTTTTTCTAGAATTTTAAATCTCCGAAAATCTTGCATCTTTGAACTTTTTTTCAACGAACCGTCCAACCCGGTTAGCCTGCAGACCGGACCGGATTTTGTTTGAAGTGGATATTGTACATTAAAAAAAT


Gene Sequence:
>Vu_22635(-)
GGCGCAAAACGTCTCGTTTTATTTGTTCAGTTCTGTTACCCTAACTGTGGCACTCGTAAGGTTTGTTCCTGAACTTGTGGTGGCTGCAATTAACTTCTTCTTTCAATTGATGCCAATTACTGCATGATATCATTGCAATTGTTGTTTACTATATTCCGTTAACTTCTCGATTAATTGTATTCGAAATTACTAGATTTACTCAATTCCAATTCATACTAGAATCAATATCTACAGTTACATGTTTTTATTTTCTTTTGTCTTCTTTATTTTTCCCCTGTGTAATCTTTTTTCCCTTTTCGTTTTTGAGCAGATAGTTGTTGCTGAAGAGAGTTGAAAACACCAGGAATTTCACTGCTTAAGAGTTGAATATATGGAGACTGAAGCTGACTCAAGAGATACTTCACTCATTCTGCTCAAACAAGGAGCTGAGGCTGTAAGTGTAATCACATCCTGGATTTGTAGAATTAATTAACACCTAGCCTTGATGTAAAATTTCTATCTTTTATTGTTTTTTTACTGGTGCACTCACCTTGTATGTACAATCACTCCATTGTATTGTTTGGTAGCAATTGATTTCTGGTTTTCTGCCCTTTGAGGGTGTAAAGTTTTAATTTTAGAGGAAATTGGTAACAATTGGTAGCAAGAAGGACCCGGATGAATTAATTCCCTGAGAATGAAGTTTTTGATAGATAAAAGTAGCCTCACCGAAAACATCCTAAAGGTACTCTCGTTATTTCTGCATTGAACCAAATATAGCTGGTAGGTTATACAACTCTCCAGTTTAGACTAAACACTAAACACATTCATGCATTCACCAAGAAGGCCATCCAAGTGAAGAGCCAAGAGAAAAAAAAAATTATATGCCTTCTTCCACGGTTATATCCTCACAGGTCAGAGAAAGTTTCATTTTTCTCTTTCCAGTTGTTTGGTTCAGTGGAAAAATAATGAGAGTACCTTTTGATATGTTGTTAATGAGGTTACTTTGTTCTTCATAGTATGAGGTGGGATGTTGTTGGTGAGGATACTATGGAATGCTCTTCCTCTAAAAGTTTCAATTCAAGCTTAGAGGAAATTCCTAGCAATTGACTCCATCAGCATTGTGAGATCCATATAGTTAATCTTACCCAGTAGGATAAGGTTTTTATTTGTTGTTGGGGTAGTTCTTCAACCCACTGCTTTGGATGATTCTTTTTTGTGAAATAGCACTGACTAAATTATGGCCTTTTGCGTTCCTTTTTGTAGAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCCGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAGCTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCGGTTAGATTTAGACAATTTGTGTTATTTGTTTTACACTGAAGCTCTGTATATTAAGCTGTGCATTGTTTTATTTCTTGAATGTTTTATTTCACCAATTGATTTTTTTGAGCAGGAGGCTAGGTGCATGACCAAAGCAAGGCGACTTGGTGTTTGTACTCCTGTGCTGTATGCTGTGGATCACGTGTTGCACACTTTAACATTTGAATATGTTACTGGCTCTTCAGTCAAAGATGTGTTCCTTGAAATCGGGTCACGTGGGACTGATAAAGAGTGGCTGGACAATATAGCATCCCAAATTGGTGAAGCAATTGGGAAGTTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAACATGTTGTTGAAGAGTGATACCAAGCAGTTGGTGAGTCCATTCATGTCTTAGGTCCTGTAATATCCAATTACCCATTAATGCTATGCAACATGAAAAATATTGTCAATGGTTGTTACAGAATTCAAGTGTATTTTACATAGGTTCTTATTGATTTTGGTTTGAGCTTCACTTCAACTCTTCCAGAAGATAAAGCTGTTGATTTGTATGTTCTGGAAAGATCTCTTATCTCAATGCATTCATCATGTGGGAATGTGGTAAGCCAACTTTTCGTTTCCCCTTAACTGTGATGCCATAGAAAATAGAAAATTAAGGAGATGAAGACGGTTTTATTTTTCAGTTCTAAGAATTTGAATTAGAGGGGCACTCCACATAGTTAGTGCTAAAAGTAGCATAAAACATAATTTGGGGTACGTTTTACTAAAAATCTTCTGTTGAAACTAGCTTTAGTACACCTAGATTAAAGCGTTACAATTTACATCTTAATTTTCATAAACATGCTCTTGTGTTAATACTTAATTAAAGCTGTCAATGTGAGAGGTCTGCCATGCTTGTGATAAGTTTTTTGCCCAATTTCCTATTCCTGTTTTCAACTGTTTACAATCAGGACTTTCTAGTGTATGCACTAAAGTTGATTTGGGCAATGTTTGTGCTAAAGAAACAAAGCATTGAATAGGATGAACTCTTTATCTCACAAATGAACTTCTCATTGACCAACAATAGCACTTCCTTTTGTGTCAAAGAAGCTGAGATTTACTTCACCACCCTATGGATCCATGTCATCTAACTTCACATTCCGCAAACAGAAACCGAAGCCTTTTTCTATAATATGTTTTCTGCTTAGTCAAACAGAAGGTATGATTATAAACAAGAAATCAATTGACTAACAATTTTGAACATTGGATTTTGTCTGAACAGATGGATCAAATTCTTGCTGCATACAGGAAGTCGTCAAAACAGTGGTCATCCACATTAAACAAGCTAGCACAAGGTTATACCCTCCCTCTTCTACTTTCTTCAACTTTTACACTTTTTCTTCAATACGTGCTTCTTACTTCCATAATTTTCACAACTTGCAGTGCGACAAAGAGGGCGGAAGAGGACCATGGTTGGATGAATCTGTCTCAAATTTCGTTTCTTTATTGAGATATAAAAACGACAACTAAGGATGTTATTAATGTAGTTTATCTTCACATTCTCTCTCTATTTGTATTTTTGTAGTGTGCTTATCTTCTACAGTTTATAAAAAATGTGATGCCGTTTA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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