Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22512	LG5	55951711	55952856	PREDICTED: uncharacterized protein LOC108341815	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	anchored component of membrane, extracellular region, anchored component of membrane
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/T	55951730	missense_variant	p.Val376Glu
G/A	55952066	missense_variant	p.Ser264Leu
C/T	55952114	missense_variant	p.Arg248His
G/A	55952308	synonymous_variant	p.Ile183Ile
A/G	55952365	synonymous_variant	p.Leu164Leu
T/C	55952506	synonymous_variant	p.Arg117Arg
G/T	55952595	missense_variant	p.Pro88Thr
G/A	55952719	synonymous_variant	p.Pro46Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22512.1

MASSIATFFNKFLYLLILLVHLGCFIFTTTAGGKKTPPSKKRKISPSSPSHPKFKTHKALSSSWHFIKHLLSTKSCKTPKTATSQLSPQSTAPTSTTSVSPAAAHSLVSLTQPDPDRKQPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGSLTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEREFGFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARSETGVYTRLDEEELLVFNPRAVLPCFVIVYTV*

CDS Sequence:
>Vu_22512.1

ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTTTATCTCCTCATCCTCTTGGTCCACCTTGGCTGCTTCATCTTCACCACCACCGCCGGAGGAAAAAAAACGCCACCATCAAAGAAACGCAAAATCTCACCCTCCTCCCCTTCCCACCCAAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATTAAACACCTTCTTTCCACCAAATCCTGCAAAACCCCCAAAACCGCCACCTCCCAATTATCCCCTCAATCTACCGCCCCCACCTCCACAACCTCCGTCTCCCCCGCAGCAGCACACTCCCTCGTTTCACTAACACAACCCGACCCGGACAGAAAACAACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCCTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTTAAACACGCGGTTTCGGACCTATCCGGATCCGACCCAGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCCAAGTTCGAGGAGTACCGCGAGGTCGTCAAGTCCAAAGCGGCGCGTCACGGATCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGGAACGAGCTCATGCGCTTCCACTGCTCCACGTTTCTGTGCGACTTGGGACACAGTGGGGATTCGTCAATTTGTTCTCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCCCCTAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCAGATGACGTGGAACGAGAATTCGGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTCATTGCGGGTCGGGTTGGATCCGATTCAGACGACGCCGAAAAAGCTGATGGTGGTTTTGATTCGGTAATGGCGAGGTCAGAGACTGGAGTTTACACGCGGCTTGACGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTCGTGATTGTGTATACTGTGTGA

Promoter Sequence:
>Vu_22512::LG5:55952856-55954856(-)

GACAGAAATTTAATAAAAAATATAACAAATTTAATAGAAATTTGATAAAAGCTATTTAAATTTATAATGAAATTAAAATTTAATTAAGGGTAGTTTTAATTCACATAATTTTCTTTTACTACTATCTAGATTTTTTTTAATGATATAATTAGCTAGAGGGTTTCTTTACCCACTTTGTTATTGTCTCTCGATTTCTTTCATATTGTTACCATCATGTTTTTCATTATTTACTTATTTTAACTATATATAATATATATATATATATATATATATATATATATATATATATATATAGCCAATAAAACAATGTTTTTAAGAAAATTGTGATGCAATGACGAATATGTCAATTTTTGTCATGCAATTATTAATAGATCGATAAAATAAATGTATTAAATTTAAAAAGTGATAAAATATAGAATAAAAAAGTGTATAGTGTATCTGTGATAGAAAATTGTGATGGAAGTGGAAGAATCCACGTGAGATACTGACATTGGTGTGATATGATTGAAAGTATATTAAATTGTGAAGTTTAGTGAGAAAATTGTAATGCCTAGCTAAATTATGATGCTAGCTAGGTTAAAGTATCTGCATTTCATCATCTTAAGGACCTTCTAATAATCTTCACATGCCAACTATCATCATTTCTCTCCAGCTATTCTGACATCATTGTCTTCCTCGCATGTTTCATAATATTTCATCTTTTTCTTTTATTTAACATTACTCACTCTTCAGTTTTAATTTCTTCAGTTTTTTACAATTTTTCTTTGCGAGTTTATCTTTATTAATGGTACGCAATTACTTATTAATTATCCGATAATTTTAGGTGAAAGATTTAATCGGACCAAATGAAGAAGAATAGTTAAAATAAGGGGAAAAACATGAGCCAATAATTAATGAAAATAGAAAATAAGAAAACTGTTGTGAAATAGTTCATATTTTAATATTGTACTACAATAGGACATCTTCAATTATTTCTTTTTCATGTGCCTAGCTTTACAGACATATTTATTATAGAATTTATTTCCATTGTAGTATAAAAGGGAGTCTTATTGGAAGGTGGCCCTGCTCTACTTTAAACTCCAAGACAGTTTTTTTTTTTAATAATTATGTAAAGTAATTGAGTGAAAGGGTGTATTAATAGTTAATTCCAACCCAAACAATAAATATAATAATTATATTTATGAAGGAATGCAACAAATATATAGTAAAACTTAAAAATCGTGTATAAGATATGATAAGTCAGTCACATTACGAAAAGCATTCAGTGTGTAAATTATGCTTATTCTTTATTTAATTATTGAGCTTATTTAATTATTTAATGCTTGATAATTACTACTGATCCACGTCAATGATTGTTGGCAGAAGAAAACCAGAGGGAAGGTGAGGTAAATCTGAGATAATTTCTTGCTTCATAATTGCTTAACCGTGTAGAAGCAGTGGCACCACAGAATCACTTTCCACCCTGAATTCAAGCTCAAATTAGCAAACCAAACACAGTATATATTATAGATTGAATCACGTACCGTTACTTTCGGTTAAAGCTTATACATCATGAACGCAGCAACACTATATCCTTAGCTTCTTCTTCTTCCATTCCTCATATAATAATCTCTTTCTGGGGCACACCACAGTAAGAAAGAAACAGAGATCAGTGCTTGCTTTGCTTAGTTAACGCTGTGAAGTTGCGTTCCACCTACTCTTTTTAGTCTCTTTATCTTTATTCTTCTTCTGTTCTAACGCCCCCACCCTACACCCCTCTCTCCCATCAACCTTCCTTTGCATTCTTTCTTTCTTTCTTTCTTTTCCTTTCTTCACTTTCCTCCCTTCTTCACCCTAACTCATTTCATCTTCTCCCTATGAAATGATTCACAAACACCACCCCGGTTGCACCATTCACCACCATGCCTACTTAGCCTACACCATCATTCACAATCTCAGAAGCCCCCACAGATTTAGGTAAGTGACCACAAAAGATTCATTCTTTTTCTGCCTTACAACTT

Gene Sequence:

>Vu_22512(-)