Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22510 LG5 55938517 55941213 PREDICTED: transcription factor MYB48-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G 55938624 synonymous_variant p.Gly36Gly
G/C 55938704 missense_variant p.Gly63Ala
A/C 55938791 missense_variant p.Asn92Thr
G/C 55938892 missense_variant p.Val126Leu
G/T 55939003 intron_variant
A/C 55939099 missense_variant p.Lys158Asn
A/G 55939113 missense_variant p.Glu163Gly
C/T 55939178 intron_variant
G/C,T 55939215 intron_variant
A/G 55939324 intron_variant
T/A 55939334 intron_variant
A/T 55939419 intron_variant
C/A 55939476 intron_variant
T/C 55939486 intron_variant
T/C 55939525 intron_variant
A/G 55939580 intron_variant
T/C 55939601 intron_variant
T/A 55939687 intron_variant
T/A 55939869 intron_variant
C/T 55939938 intron_variant
C/G 55939986 intron_variant
T/A 55939999 intron_variant
A/G,* 55940043 intron_variant
A/C 55940115 intron_variant
C/A 55940136 intron_variant
T/A 55940137 intron_variant
T/A 55940295 intron_variant
C/A 55940429 intron_variant
A/G 55940559 synonymous_variant p.Ala197Ala
G/A,* 55940649 synonymous_variant p.Arg227Arg
G/A,* 55940663 missense_variant p.Arg232Lys
T/C 55940694 synonymous_variant p.Asn242Asn
A/G 55940723 missense_variant p.Asp252Gly
C/T 55940727 synonymous_variant p.Tyr253Tyr
C/T 55940780 missense_variant p.Ser271Leu
A/G 55940781 synonymous_variant p.Ser271Ser
A/T 55940789 missense_variant p.Gln274Leu
G/C 55941095 missense_variant p.Cys376Ser
T/C 55941174 synonymous_variant p.Ser402Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22510.1
MKDIGGGGAIIPVNGSNPSKSSVGPPLTAIERFLWGQQSHSSQQQPQNVANNIHASVLDGFGGSNYNIFWHNGGREVNFVEKLLANEVEGLNWTQQVPPLCLKEDLLVSGKNRKGVGRKPKEGSSVPWIKGQWTEEEDRKLLKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAEFGNRWAEIAKQIKGRTENAIKNHWNATKRRQNSRRKNKRAGMGNGKPLSSILQDYIKSLSLSNTSNPSVEQTSASQQLSDIATNSSNFSLMSESYDDEISFMQQFFDENNVIAESVKQTKTLNNSSAGFNGYHHQSSNNSQFLTELTQSGSVVHSNSQMSFDESLFLSKRTPIGFDVCLSHGTAASSFLCNNGIHNQNMEFVFSNSQFLHSKNILT*


CDS Sequence:
>Vu_22510.1
ATGAAAGACATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATCTAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAGAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGCTTTTAGCAAATGAAGTGGAAGGTCTGAATTGGACACAACAAGTACCTCCACTGTGTTTGAAAGAAGATTTGCTTGTGTCGGGAAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGCTAAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATAGCAGAAAAGTTGGATGGAAGAGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCAGAGTTTGGAAATCGATGGGCAGAAATTGCTAAACAGATAAAAGGAAGAACCGAAAATGCAATAAAAAACCATTGGAATGCCACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATGGGAAATGGAAAGCCATTGTCCTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTCAGCAACACTTCAAATCCCTCTGTGGAACAAACATCAGCATCACAACAGTTATCTGATATTGCCACCAACAGCAGCAATTTCTCACTAATGTCTGAGTCCTATGATGATGAGATTTCCTTCATGCAACAATTTTTCGATGAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTGAACAACTCTTCTGCAGGCTTTAATGGTTATCATCATCAAAGCAGTAACAATAGTCAGTTTCTCACTGAACTCACTCAATCAGGATCTGTTGTTCATTCAAACTCACAAATGTCCTTTGATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTATAGGTTTTGATGTCTGTCTCTCTCATGGAACTGCTGCTTCATCATTTCTCTGCAATAATGGGATTCACAACCAGAACATGGAATTCGTTTTTTCTAATTCTCAGTTTTTGCACAGTAAGAACATCTTAACTTAA


Promoter Sequence:
>Vu_22510::LG5:55936517-55938517(+)
CTTTTAAATTATAGATATAACTTCTTCTAATCCTCCGATTAAAAATTCGTATTATTTTTATTCTCTAGGAATAGTGATGTTTACTTAATGCTTCAACTACGATTAATGGTGAGTGGAGATCCCTCAGCTTGTTCTGAATAAATTGTCATTTTTTGGATGGAGAGAGATAGGTAAGAGATAAAAAGAAGTATTGAATATATATATATATATATAATTTGATTATATTTTTAATTGATGTTAAATTTTTAATATATCTCTTCACCTTAAGAAATAATATTAATTTAATATTTAAAATTAATTTATTAAAATGGGATTTATATATATTTGTCTACATATTATAATTTGACTGTATTATTACTTAATGTGAAATTTTCAAACAGACAAAATCTTATCCTTTTTATGAATATACAAACCAAATATATTTCTTCTAAATAATGTGAGAGATAACAAAAATTTAATATAACTTTCGAAATATTTTCATTTTAACCTTATAGACCAAAAATAAGGTTTAAAAAAATTGAAGGACTTAAAAATAAAATTTGTAATTAAATGATAAAAAGAAAGTAGTAACCTCAGTTTAAATGTTAAGTGATTAAAAGTATATTTAAGCCGACTATTATTTATCTTTAACTAATTCGTCATAGTTATCTTTTTAATTTAATTTAGATGTAAATATTCAAAAAATAAAAAGGAAATAAGTAATTTCAATTTACTTTGTTAAAAGATTATAAAGATAATTCGTAATTTACAAAGGGTATAGAATATTTGATCTCGATTATAGATGAAACAAAAATGGAATTGGTAGATAAAATTATTTCATTTACGTTTAGTAAGGTGACTTTTTTTAACAATTTTTTACATATTGCTCATGTTATAGTTTTAACATAATTTAGACGAAACACACATATATTATTCAATTATTTGTTTTTATTTTTACTAAAATATTTTAAACTTTTAACTAATTTTATCAAATACTATTTTAACTTTATTTTTTTTAAACTTTCATCTACCTTTTTCAACTAATTTTATTAAAAATACCCTAAAAGTTATACACATAACCAAACTTATTTTACACAAGTACTTGATCATATACATTTCACTTCCACATGACAAGGAAGATATGTTCGCATTTCTCAATGTTTTATTTCCTCTTGAATCTCAATACTTTTCTTCAATGTGAATTGAATAAACATAAATATATTAGGCTGGATAATTTGAAAAAAAAACCCTTGACAAAAAGAAAATATGTACCCTACGTTTTACTTTCTATTATTTTTAATTTCTAAATTATTATGTCAAACATATAAATTGAAAAAGAACTCAAAAGAGAATAAATTTTTGAAAACAAAATTCAGAATATACTTGAGTCTGTTCATATACGTGTTCACTAAAATTTACAAATTACATAACTCAATCTACTCTAAGAATGTCACCATTTGCAATATACCCAAAGAATTCTTGTGCGCAAACCATATTCCTAGTTATTTTGAACAAGAAAATTCCGAAAAAAAAATGTAAACAAAAATTTACAGCCTTTAATGATTTTAAATATATAATATGTAAGAAGAATAATGACTTAAATCGAAAATTAACTCTAATTATGCCATTATCGCAATTAATTAGCCCATTAAGAATATTAAGTAACATTTTAATATCAATTACACCTATTCAACAACTTTTCATAAGCCAAATTTGTAGAAAAATTCAAAAGTGAATCTAGAATTAAAACACATTATAAAGTGAAATAAAAGGTTAAGTTAATACAGCAGATTCTTCCTTAGTCCAATGGAAGTCGAGGAGTTACACCATCTCTAACTCGTAATTTTTGAATAAATAGTGCATAAACCTTGTTTTCTAATCCATGCAAATGTGTATAATATAATAACCATCGTTTATCCACCATTTTGTCCCCTCACAAAATCCCTTAAGACCTTACCATAAACAAAGTTCTTTCCCTTTCTGATATCTTTCTGATATCTTTCTCCATTATATATCTTTCA


Gene Sequence:
>Vu_22510(+)
ATGAAAGACATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATCTAACCCTTCAAAGTCTTCTGTTGGTCCTCCTTTGACAGCCATAGAGAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCAGCAACAGCCACAGAATGTTGCAAACAATATCCATGCAAGTGTTTTGGATGGTTTTGGTGGCTCAAACTACAACATTTTTTGGCATAATGGTGGTAGGGAAGTGAACTTTGTTGAAAAGCTTTTAGCAAATGAAGTGGAAGGTCTGAATTGGACACAACAAGTACCTCCACTGTGTTTGAAAGAAGATTTGCTTGTGTCGGGAAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGTTGATAAATCATGAGAATAATCAATACCCTTTTCTGCATCCTTTTCTGCATCCTTTTCATTTATCAACTGTTTTCTGATATGTTGTTTGTTATTGCTGTGATCAAAGGAAACTGCTAAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATAGCAGAAAAGTTGGATGGAAGAGCTGGGAAGCAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGGTATGTCAATCAGTCGCTTGATCTTCCTGCTAATTTTTATGCTATTTGTTTTATAATTTTTACTTATTTCCATTGTGTATTTTAAGAAAGTTTAATCTTAGAAGAAGTGAGAAAAAAACCATGCCCTAGGGTTATGTTATTTGAACGATCAGCTTCAGTGTATATTTCTCTGGTTTTTTTAGAACAAAAGAAACCTCAAAATTAGTCTGTCTAACAAGGGTTTTTCAAGTTGATAAAAAGAAAAACAAGAAATTTTCAACATATGATGTGTTAATGATGAAGTATCTAGGCATAGATTCAGTTTTTTCCAGGTTTATTTCGAATTTTCAAATGGATCACTTTCCATATGTTTCCTTTTCTGTATGCGTATAAACATGGATAAAGATTAAAACTGGTTGGATTAGGCATTCATATATTCCTGTTTCGGTCAATGTTTGTCTCATAAAATTTCCTAAAATTATAGCATTATTGCTTCTAACATTTCGATAACTTTATTCTTAATAATAGTAAAAACTCCTATGATTAAGTCACAACACTTACTTATTAACTTAATTTTATTCTTAATAATTTTGAAACTTCTATGATTAAGATTACCTAATACTGCTTTTAATACTGCTTTTAATAATTTGATAATTTTATTTCTAATAATATCAAAAACTTCTCTTATTAAGTTAAAATATTAATTAGTTTAAATAGTACTCTGACTATTTTTTATTTAATTTAAATATGAAAATATTTATATTATATTAGCACTATTTATATAGAAAAAACAATTAATTATTTAATTATTTTTTATGATTATTTTTGAGGAAAAATCTCCCTTTTAACTGTTTATTTACTTATTTTAATGTTTAAACTAAAAATTTATAAATTAAAAACCCTTTTATAAATATATAAATTATTTTTAATAATTTATCAAAGTAAGCTTATAAAACAAAAAAAAATACAATTATAAACATAAATAATTTCTACATTAATAAAAATCACTTATTTTGCATATTTATTTTTTAAAATTTCCTTTATTTTTAAGTTTAAACAAATTCTATATATATATATATATATATATATATATTAATTTCAACTTTTTAAAATAATAAAATTCTAAATGTGCAAATATGATTACAATATAAAGTAATTTTAAACCGCTTCTATAAAACCAATATTTATACATTTTTTGAGAATAAAGATTTCATGAAAATGAGCAAATATAATTAGCTTTTATTTTTTAAATTCTGTAGAAAATAATTTTTATTCGGACTATCTTTTATTTATCTAATATAAATTTATTTTTGTATCGTACAATTTTTAAACTATAATTTTTGTGTGTATTTGATATTACAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAAATCTTAGTAAAATATCATGCAGAGTTTGGAAATCGATGGGCAGAAATTGCTAAACAGATAAAAGGAAGAACCGAAAATGCAATAAAAAACCATTGGAATGCCACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAGGAATGGGAAATGGAAAGCCATTGTCCTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTCAGCAACACTTCAAATCCCTCTGTGGAACAAACATCAGCATCACAACAGTTATCTGATATTGCCACCAACAGCAGCAATTTCTCACTAATGTCTGAGTCCTATGATGATGAGATTTCCTTCATGCAACAATTTTTCGATGAAAACAATGTCATTGCTGAATCTGTTAAGCAGACCAAAACTTTGAACAACTCTTCTGCAGGCTTTAATGGTTATCATCATCAAAGCAGTAACAATAGTCAGTTTCTCACTGAACTCACTCAATCAGGATCTGTTGTTCATTCAAACTCACAAATGTCCTTTGATGAGAGTCTTTTCCTCTCTAAAAGGACTCCTATAGGTTTTGATGTCTGTCTCTCTCATGGAACTGCTGCTTCATCATTTCTCTGCAATAATGGGATTCACAACCAGAACATGGAATTCGTTTTTTCTAATTCTCAGTTTTTGCACAGTAAGAACATCTTAACTTAA