Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22464 LG5 55288367 55289510 transcription factor MYB80
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen development, trichome morphogenesis, anther wall tapetum development, regulation of transcription, DNA-templated, trichome morphogenesis, anther wall tapetum development, regulation of transcription, DNA-templated, anther wall tapetum development, trichome morphogenesis, regulation of transcription, DNA-templated, anther wall tapetum development, anther wall tapetum development, anther wall tapetum development, anther wall tapetum development, anther wall tapetum development, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, chromatin binding, transcription regulator activity, protein binding, DNA-binding transcription factor activity, sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 55288447 synonymous_variant p.Ser27Ser
T/C 55288605 missense_variant p.Val54Ala
T/C 55288723 3_prime_UTR_variant
G/T 55288983 missense_variant p.Lys149Asn
G/T 55289064 synonymous_variant p.Leu176Leu
C/T 55289065 stop_gained p.Gln177*
A/G 55289135 missense_variant p.Lys200Arg
T/C 55289378 missense_variant p.Met281Thr
T/A 55289387 stop_gained p.Leu284*
G/C 55289393 missense_variant p.Arg286Thr
T/C 55289441 missense_variant p.Leu302Pro
G/A 55289481 synonymous_variant p.Pro315Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22464.1
MGRIPCCEKDNVKRGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFHGQHSAAALGNNFTDYINCKPDEKDATVEKIKFDLSKAMQQESEMMPSNKHWDSTANTSASFVMPYSVFPTISGYQFSPSSFGNKGDASPWSQSVCTGSTCTAMDRQSQLHEKLEEENGDDSEATKEIRNLSNIFNSDCVVWDLPADDLINPMV*


CDS Sequence:
>Vu_22464.1
ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATCACAAACTCTCCTCTTACATTGCTCAACATGGCACTCGCAACTGGCGTCTAATTCCCAAGAATGCTGGTCTCCAGAGATGTGGGAAGAGCTGCAGGTTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCGGATTCAGAAGAACAAACCATTGTGAAGCTTCATTCAGTTTTCGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCATTGGAATACCAAGCTAAAAAAGAAACTGTCAGGTATGGGTATAGACCCTGTAACCCACAAGCCATTTTCCCATCTAATGGCCGAAATTGCTACCACATTGGCACCTCCACAGGCAGCTCACTTGGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCATGGCCAGCATTCCGCTGCAGCACTGGGGAATAACTTCACTGATTACATTAATTGTAAGCCAGATGAAAAGGACGCAACTGTTGAGAAAATCAAGTTTGACCTATCCAAGGCCATGCAACAAGAATCTGAAATGATGCCCTCAAATAAACATTGGGACTCCACTGCAAATACATCTGCAAGTTTTGTGATGCCATATAGTGTTTTCCCAACAATATCTGGTTATCAATTCTCCCCGTCATCTTTCGGCAATAAAGGGGATGCATCTCCATGGAGCCAAAGTGTATGCACAGGGAGCACATGCACAGCCATGGATCGGCAGAGCCAATTACATGAAAAACTTGAAGAGGAAAATGGTGATGATTCTGAGGCCACGAAGGAAATTCGAAATCTATCTAATATATTCAACTCAGATTGTGTCGTGTGGGATCTACCCGCCGATGATTTAATTAACCCCATGGTTTAA


Promoter Sequence:
>Vu_22464::LG5:55286367-55288367(+)
CGATGAAGAGGGCGTCAACAATATCTGTCATTATCACAACATTTTTCTACCTCTGTTGTGGGTGTTTAGGATATGCAGCCTTTGGTAATGAAACACCAGGAAACCTTTTAACAGGGTTTACATCTAATGCACAGCATTGGCTTGTAGACTTTGCGAATGCTTGTATAGTGATTCACCTGGTTGGTGCATATCAGGTACATGTATAATCTTACAGATATCTTATCTTCATCGTGAATGTGGCATTTGTTTTATATGTTGTTCTGGTGCAGGTGTATAGCCAGCCACTTTTTGCCAATGTTGAGAATTGGCTCCGTTTCAAGTTCCCAGACAGTGAATTTGTGAATCACGTATACTTGTTGAAACTCCCATTGCTGCCAGCTTTCCAACTAAGTTTTCTGAGGCTTTCTTTCAGAACTGCATATGTTGCATCAACAACGGTGATTGCAATGCTCTTTCCCTACTTCAATCAGATTTTGGGAGTTTTGGCCGGAATAATCTATTATCCATTGTCCATATATTTTCCGGTGGAAATGTACTTGAGTCTGAGCAATATTGAGCCATGGTCGTCTAAGTGGATCATGCTCAGGGGTTTTAGCACCGTTGGCTTTGTGGTGGGATTGTTCACTCTCGTTGGATCCATTGAAGGGATAGTATCTGCAAAACTAAAATGAGGAGCTTTCAGCGGAACTGGAAGTTGAACTGAGAAAATAGATTGTGGTTGCATTTTTGTGTTGAAAATCAACGTTAATCAGCATAAAGAATTCAGCATGAAAATTGATGAATTCAAGGTTCTGCGTCTCTTCCTGTTAAGACGTGTTGAAGTAAACAAGTGTAATTGAGTTGCAGAATTGCATTTTTTTTTGGGAAACTAGTTAGTTTCATCTGTAATACTTTAGTTAAGACGCAATTTTTTTGTCATGGAATAAAAAAGTTGAGCAGGTTTTGTCACGACCTTCATTTCACTTCATACTTGAGATTCAGGGAAATCTGCTCTGTACCTGAACTGCGTTATACTTCCAGTCTGGTAAAAATTACAGTGCTGTTTTTTTTTTCTTATTTAAACCAAGATTTTACTAAATTAACAGTAAATGAGGACATAATGATAATATCGTTAATTGGATGAGCAGCACTTCATAAATATCATTATGATGTTCAGGAAAATGATAAATAGAATTTGATAAAGGTTGTAAAAGAGAAAAAGAAAAAGTGAAATATTTTTTTTAATGAAAAGGTTTTTACAAAGTAATTTATACATAATTTAATTTATGAAAAAAGTTTATTTTATTTTGTAAAAGTGTTTGGAAGAAGCTCCTTTTAAGATCCTAATTATCCATGCTATTCGTCTTGGATAAAAGTGGGTCTCTGATTATTGCAGAAGTATTGTGAGAAAGAAGAAAAGCACACATGGAGTGTGGGATCCGTATCACTTTCCAGGGTCTCTTCTGCCATAGTATAGTTAACAGGGAAAATTGATGATGAAGAATTTTATGTAAGACTGAAGCGCCACACGTGGACCTTGACATAAGTAACTGTGAAGAAAGATGATGAGGTTTTGTGTGATCAAAGCATAAACCTACCCAACAGATGCATTAAGCACACAAACAATGAGCAAAGCAGTCAACAACGAAAGAGAAAGAGAGAGAGATGTTGACCAAGCATCTTGCGGGTGAGCTACCTACCTTCCCCTCACACGCTCAATGGCGTTGAAATTCTTTAACAAAATCATGCGCCTTTGATGCCTTTATGCCATGCAATTCCAATTGGCACCCCTTATATATTAAGAATAAGAAGCCTACCAGAAAAACAAAAACCAACTCAAACAAATATTCCACGTCTTCCCTTTTGGCCTCAAAGAATTCAAAGACGGGTAGAGAGAATTCACAACTTGTGTTGAAAGAAAGAAAGAAAAGACAATTATTCTAGTCCTGACAGCCCTGAAAATTGAAATTTCTTTCGGGGTAGGAGAATTAACAAATTGAAAAGCAAAAATATTAGAGACA


Gene Sequence:
>Vu_22464(+)
ATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATCACAAACTCTCCTCTTACATTGCTCAACATGGCACTCGCAACTGGCGTCTAATTCCCAAGAATGCTGGTTAGTCTATCTCCACTCTATTTATCTTTATATCACTCCTATCATCTTATTAAAATACTACTCTTCATTTAAATAGGTCTCCAGAGATGTGGGAAGAGCTGCAGGTTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCGGATTCAGAAGAACAAACCATTGTGAAGCTTCATTCAGTTTTCGGTAACAGGTGCATATTGATTAAGTTATTGTTAATAGCATAGGTGATTGATTATTATCTTTATGTAATTGTTCCCTAAATACTTAAATGGATGTTCAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCATTGGAATACCAAGCTAAAAAAGAAACTGTCAGGTATGGGTATAGACCCTGTAACCCACAAGCCATTTTCCCATCTAATGGCCGAAATTGCTACCACATTGGCACCTCCACAGGCAGCTCACTTGGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCATGGCCAGCATTCCGCTGCAGCACTGGGGAATAACTTCACTGATTACATTAATTGTAAGCCAGATGAAAAGGACGCAACTGTTGAGAAAATCAAGTTTGACCTATCCAAGGCCATGCAACAAGAATCTGAAATGATGCCCTCAAATAAACATTGGGACTCCACTGCAAATACATCTGCAAGTTTTGTGATGCCATATAGTGTTTTCCCAACAATATCTGGTTATCAATTCTCCCCGTCATCTTTCGGCAATAAAGGGGATGCATCTCCATGGAGCCAAAGTGTATGCACAGGGAGCACATGCACAGCCATGGATCGGCAGAGCCAATTACATGAAAAACTTGAAGAGGAAAATGGTGATGATTCTGAGGCCACGAAGGAAATTCGAAATCTATCTAATATATTCAACTCAGATTGTGTCGTGTGGGATCTACCCGCCGATGATTTAATTAACCCCATGGTTTAA