Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22327 LG5 53124133 53127317 PREDICTED: scarecrow-like protein 21
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 53124146 3_prime_UTR_variant
T/C 53124167 3_prime_UTR_variant
T/A 53124217 3_prime_UTR_variant
A/C 53124221 3_prime_UTR_variant
A/G 53124223 3_prime_UTR_variant
A/G,* 53124231 3_prime_UTR_variant
A/T 53124232 3_prime_UTR_variant
C/A 53124314 3_prime_UTR_variant
G/A 53124328 3_prime_UTR_variant
A/C 53124330 3_prime_UTR_variant
A/T 53124703 synonymous_variant p.Pro425Pro
A/T 53124811 synonymous_variant p.Ala389Ala
T/C 53124832 missense_variant p.Ile382Met
C/T 53124889 synonymous_variant p.Gln363Gln
A/G 53125021 synonymous_variant p.Val319Val
G/A 53125176 synonymous_variant p.Leu268Leu
T/C 53125204 synonymous_variant p.Glu258Glu
C/T 53125298 missense_variant p.Arg227Lys
A/G 53125332 synonymous_variant p.Leu216Leu
G/A 53125351 synonymous_variant p.Ser209Ser
G/A 53125358 missense_variant p.Ser207Phe
C/T 53125362 missense_variant p.Val206Ile
C/G 53125366 missense_variant p.Lys204Asn
C/G 53125370 missense_variant p.Arg203Pro
G/A 53125371 missense_variant p.Arg203Cys
G/T 53125373 stop_gained p.Ser202*
T/G 53125390 missense_variant p.Glu196Asp
G/A 53125503 synonymous_variant p.Leu159Leu
A/T 53125508 missense_variant p.Ile157Asn
C/T 53125510 synonymous_variant p.Ser156Ser
C/T 53125568 missense_variant p.Gly137Glu
G/T 53125670 missense_variant p.Ser103Tyr
A/T 53125900 synonymous_variant p.Ser26Ser
A/T 53126012 5_prime_UTR_variant
G/A 53126013 5_prime_UTR_variant
A/T 53126025 5_prime_UTR_variant
T/G 53126102 5_prime_UTR_variant
A/G 53126202 intron_variant
A/G 53126204 intron_variant
C/T 53126205 intron_variant
G/C 53126330 intron_variant
A/G 53126411 intron_variant
A/T,* 53126485 intron_variant
G/A 53126499 intron_variant
A/G 53126721 intron_variant
G/C 53126794 intron_variant
A/G 53126876 intron_variant
T/G 53126932 intron_variant
C/G 53126934 intron_variant
A/G 53127007 intron_variant
T/C 53127070 intron_variant
G/T 53127118 intron_variant
C/G 53127120 splice_region_variant&intron_variant
A/T 53127121 splice_region_variant&intron_variant
A/C 53127181 5_prime_UTR_premature_start_codon_gain_variant
G/A 53127183 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22327.1
MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLEQYCTLESASTSNSFPCQNSPPALSFSSNNSPLSKIESNSYVLRPQHSLEIASGPPENDPYAILDLDDLSHKMRELETAMLGPNVDMLDIYGALMPGEADSILLEAEKWKKMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVSGNPIQRLGAYIVESLVARMADSGSTIYKSLKCSEPTGNELLSYMHVLYEVCPYFKFGYLSANGAIAEALKEESEVHIIDFQISQGTQWVSLIHALAHRPGGPPKIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIILHHVPDASVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAARPREDKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTDAGFSPYPLNSFINSSIKDLLQSYHGHYTLEEKDGALFLGWKNQVLIASCAWR*


CDS Sequence:
>Vu_22327.1
ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCTTATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATATGTGCTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGCCCACCTGAGAATGATCCTTACGCGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTGGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCGATTTTGCTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCCGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACCTGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACAGACCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCGTCTTATGCACGGGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAGCTTAAAGACCTTGAACTACGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATATTGCACCATGTGCCTGATGCTAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAACGCCCCTTTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTAGAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGA


Promoter Sequence:
>Vu_22327::LG5:53127317-53129317(-)
ATTTTCAATCTTTTATTTTACAAATAAAAATTAGATAATTAATCGATTCAGTATAATAAAAAATTATTTTGTTAATTTTATTTAAAATCTATAAATAATTAAAATAATTGGACACGGTTAATCTTTAATAATCGGCATATAATTATTAAAGTAAAAATTAACATTAATATTTAAATAACCACTTAGATTAAAAAATATAAATGGTTTCTTCAAAACTAATCATATATTAACATTAATTTTCACTCTTTAATAAGTATAATATATAATAATGATTAAGATCAAACACGTATTTTATTATCCTAATCATTCACAAAGTTTATATAAGTTTAAAAAATTAAATTTTTTGTATTAAAACTACGCCTTTTTCATTAGATTATAAATTATACTTATTATAGTGAGTAAGTTATCTATCTAAAAGAAATTATTCCGCGAATTCATCTCGCATATCTTAGCAGTTTGCGTTTTTATACAAAATTTAAACATTACAAAAATATAAAATAAACTCACAAGAACTAAGGAAGAAAATAATAAATTATCATACACAAAAAATAATGAAATTTATTTATTTATCTATATTATGTATTATAGTTATTTACTTTTCTTTATGGAAAACTAGGAATTAAAATGAAAGGAGGTGAAAGCGTGTGGGGCCCACTCCAGGAGACGCCAGCACATGCATCATTAGGATGTTTACTACCACTCAATTCCATGACGTGTCTATGTCACTCGTACCCACTTTTCCATGCCTTTTTTAATAAACAAAACAACAAAAAAATTAATAATGTTCCAATTGTATTTTTAAAAAAATAATATTTCAAGAGTTTTACAATTATGCATAATAAGTATAATGATTTTTACGATAGTTATTTTTAAAATTGCTTCTATAAATTTGCATTTTCAATATAATAGTATTAAACTCGTACGTTTTTTTTAGTTTTGTTTATCCATAAATGTTAGTGTTTAAAAGTGAATGCTTATAAACTTTCTAAAGTGCCAACTTTTTCACAAGCTTATCTTACTCAATATCCAGCTTATAAACAAGTTTTTTATTCACAGAATTTATATGTGTACATAAGGACTTTCAAGAACTGAGGCAGTGTAACTTTTCTTCTGTTGGGATTAAAATTGAAGTTAATTCCATTAAAAGGAATTCCCTTTTTGGCTTTTTCTTCATTTATTTTATTTGATAATTTTTTGTCTAAAGAGTGTGAAATTAGGAGGAGCAGAAAAACTAAAAAACAATAAAGGAATTTAAAAAACAGTAATTTGAGATAATTGAGACTCTGTAATTGTATTGATTTGGTTTCTCCAAATCTCTTGCTGGATGTGAAAAAACAAACATGTTATTTAGTCATTCTATGGTTATATATAGTTTTTTTTATATATTTACTGGAATATTATTTATTTTACTCAAAAGAAATTTTTGTAAAATAACTTTACATAAGGGACATACAAAATAATTATAACTTAACGTGTTATGCATACCTTTTTCTTTTCATTTTTGACAAAAAGAAAAGAATTGAGAAATTTTTTTCTCCCTTCTTACTTAAAATAAAGGTACAAAAGCTTTTGTTAAAGATGACAAAACATACACTAAAACCCTTAATAAGTGTTAATATAACTCCAATGGTGTAGAAATTAAACACAAAAAATAAAATAAAAGAAAATAATATCATGTCTCTTTCTTATCTTAAAAAAAAGAATTTGGTAACTTTGTTTAAATAAATGTCGATGTAGCGATCACCCTCTTCGTCACAAACCTTTGAACATGTTGGTGTTAAAAGTAAAATATTAATAGATATAAATATAGTATTAGAAATCGAAAGATATTCGAGAATAATTGAAGTGAGTAGAAACAAAAGAAAGAAAAAGTTAAGAAAGTAATCAAAGTCTTTTGTAAATTAAGTGCGATGTCAGAGTCAAAAATGTAATTTGGCAGTGGAGGAGACTTTCTATGTTGGCGTCCATATATAAAATGGCAAAAGTGCAATTCATAGTTC


Gene Sequence:
>Vu_22327(-)
ATAGGGACCATAGCACCACCCAACTACAACCTTTGTGACTTGCCATGTGTTCTAAGATATAATCTCTATATTTCCAAACAAAATTTCTTTGTATGACACATATGTGTATGTGCATGATAGACTCTTCTCACTCACTTTGAGCTTCAAATCCAACTGGGTAATCTTCTTTCAGATCAGCTTTTTTTGCAGAGGTGAGTGTCTCTCAAATTTATGAACTCTCCCTTTTCATGATTTGTGTTGTTGGTTCATATCATCAAGTGTCTCTTCTTGCTAAGTTGATGATGGTGCTCCACATCAAATGTATTATTTTTGTTTTTTCTTCAATGGTTGTTCTTATTGAGTTTGTGAAAAAGGGTTGTTGTTGGAGTTCATTGATACTCATGGCATGTTTAAGCTCTTTCTGTTCTATATTTGTATGTTTTTTCTAATTACCTTTTGGCTTTGTTTCAATAGTCATTGAGGGAAAGCTTCTTATCTGTGTTTTTCTACTCTGTTTGAATATGGATTTGAATGCATACTTTTTCGAGGTAGTTTCTGACCAAGGGAAGGTTTAAAACTGTTTGATAAAAACTTCTGTGTTAATTGAGTTCCCAGAGTTGAGTCCAACCCAGAATACCAATAGAGTTTTCCTAATTGCCCGTTTGGTGGTTTTACAGTATAGCTAATCTTTTGTGTTTAGAATACCAATAGAGCCTTTTCTGAATAACTTCACCTTTTTTTACTTTTTCTATTGAGGATAAGCCAAGAAGAAAAAGAATAGGGTCTTGTTTTTACATTATGTAGGTGTTCCGAATCCATTACGTAGTGTAAAGATTTATCTTAGTTAATTTTTTAATTTTTTTTTATTGCTTAAATCGAAACCACTGATCAAAAGATCTTCTGACACTTTCGGTTTGCTGTTCATGTTAATAGCTTGTTACTAATCTGGGAAATATAGATTGTGTTGTCAAGAAGCTTACTCTTCTGGTTTTGAAATGCAAGGAATCTCTTAATAAAAATTTCACCTCTAATCTTTAGTTTCTGAACTTTATGTGAATAATAGATCACATGCTCCTTTGCCAACAGATTTAGGCAAACTACATTACCTTCTTCAATCAGTATTAATAGACTGTGTCTTTGTTTTGATCTTTTTACAGTTTAAGATTTCTTTGTTAAGTATCATATTTGTCTAAATTGATTCCTTGGCCTTCTGCAGAACAGCTCAGATATTCATTAAACTACAATTAAAAGACGGATAATGCTAGCCAGGCTTGAATAGAGTCCATAATTCAGCTGATTTTGTGTGGAAATCTTTTGGAGTTTGACTATATCTGGATCTGGAACTGGCTGGCTTGTTCTCAATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCTTATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCTGTCCAAACTTTAGAGCAATATTGCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCATTGTCAAAGATAGAGTCAAATTCATATGTGCTAAGGCCACAGCATTCTCTTGAAATTGCTAGTGGCCCACCTGAGAATGATCCTTACGCGATTCTCGACCTTGATGACCTGTCGCATAAGATGAGAGAACTGGAAACTGCTATGCTGGGACCTAATGTGGATATGCTAGATATCTACGGCGCTCTAATGCCAGGAGAAGCTGATTCGATTTTGCTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATGGTATCTAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCACGCAAGATGGTTTCCGTTTCCGGCAATCCGATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGATTCAGGAAGCACAATCTATAAATCCTTGAAATGTAGTGAGCCTACTGGTAATGAGCTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACCTGTCAGCAAATGGAGCAATTGCTGAAGCTCTGAAGGAGGAAAGTGAAGTTCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCATGCTCTTGCTCACAGACCCGGAGGGCCACCAAAGATCAGAATATCAGGTGTTGATGACTCCTTTTCGTCTTATGCACGGGGAGGAGGACTTGATATTGTAGGGAAAAGGTTATCAGCACTTGCAGAGTCATGCAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAGCTTAAAGACCTTGAACTACGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATATTGCACCATGTGCCTGATGCTAGTGTGAATGGCCACAATCATCGCGATAGGTTGTTGAGATTAGCCAAGCACTTGTCTCCTAAGGTGGTGACTCTTGTGGAGCAAGAATTTAACACCAACAACGCCCCTTTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCTGCTCGTCCAAGGGAGGACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGATGCTGGATTTTCACCTTATCCTTTGAACTCCTTTATTAATTCTTCAATCAAAGATCTTCTCCAGAGCTACCATGGTCACTACACTCTAGAAGAGAAAGATGGTGCACTTTTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATGAAAATCCTACAACAGTGATTTCAGTTTTTGTTACTCCAGGCTTCTAGTTAGGTTATGTATCATCCTTAACTTCTTTGAACAATTTCTCCTCACTTCATAGTCAAATTACTGTTTTGTAAGAGAACATCCTTAATCTATGTCAGCAATACAAGCAATATCAAGAAAGACTTATATTCTAAATTTTCTGAGATATATTTTATAACTG