Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22326 LG5 53110698 53116354 PREDICTED: probable WRKY transcription factor 20 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 53110860 5_prime_UTR_variant
C/T 53110861 5_prime_UTR_variant
A/C 53110909 stop_lost&splice_region_variant p.Ter85Gluext*?
T/C 53110927 missense_variant p.Ile79Val
C/T 53110963 missense_variant p.Ala4Val
A/T 53110991 synonymous_variant p.Arg13Arg
C/T 53111012 synonymous_variant p.Ser20Ser
C/T 53111075 synonymous_variant p.Leu41Leu
T/C 53111188 upstream_gene_variant
G/A 53111263 upstream_gene_variant
A/G 53111264 upstream_gene_variant
G/T 53111288 upstream_gene_variant
A/G 53111351 upstream_gene_variant
A/C 53111485 upstream_gene_variant
G/A 53111583 upstream_gene_variant
T/C 53111844 upstream_gene_variant
A/T 53111890 upstream_gene_variant
G/T 53111924 upstream_gene_variant
A/G 53112265 upstream_gene_variant
G/A 53112357 upstream_gene_variant
C/A 53112398 upstream_gene_variant
T/G 53112498 upstream_gene_variant
A/T 53112519 upstream_gene_variant
T/A 53112523 upstream_gene_variant
C/G,T 53112646 missense_variant p.Thr93Ser
G/A 53112740 synonymous_variant p.Pro124Pro
C/T 53112763 splice_region_variant&intron_variant
C/T 53112783 upstream_gene_variant
G/T 53112889 upstream_gene_variant
C/G 53112896 upstream_gene_variant
A/T 53112901 upstream_gene_variant
T/C 53112972 upstream_gene_variant
C/A 53112999 upstream_gene_variant
T/G 53113002 upstream_gene_variant
T/G 53113099 upstream_gene_variant
C/A 53113101 upstream_gene_variant
A/T 53113142 upstream_gene_variant
G/T 53113194 upstream_gene_variant
A/G 53113271 upstream_gene_variant
T/A 53113303 upstream_gene_variant
T/G 53113341 upstream_gene_variant
C/T 53113344 upstream_gene_variant
T/A 53113423 upstream_gene_variant
A/G 53113508 upstream_gene_variant
A/G 53113542 upstream_gene_variant
C/T 53113601 synonymous_variant p.Ser143Ser
A/T 53113737 missense_variant p.Asn189Tyr
A/G 53113743 missense_variant p.Thr191Ala
A/G 53113767 missense_variant p.Ile199Val
G/C 53114003 synonymous_variant p.Arg277Arg
G/T 53114187 missense_variant p.Gly307Val
C/A 53114674 upstream_gene_variant
A/T 53114793 upstream_gene_variant
C/A 53114901 upstream_gene_variant
T/A 53114922 upstream_gene_variant
C/G 53115187 upstream_gene_variant
C/T 53115302 upstream_gene_variant
C/A 53115566 synonymous_variant p.Pro419Pro
C/A 53115724 missense_variant p.Pro472Gln
T/C 53116109 3_prime_UTR_variant
A/G 53116156 3_prime_UTR_variant
C/G 53116276 3_prime_UTR_variant
C/T 53116353 splice_region_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22326.1
MDAAEALSDDPNRPGSRPNSAPDAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQTAHASVTSAASASFPVTTASFNTNTIDDRKPSFFEFKPHSRPNMVPADPNNHASEKSTQIDEGKTQPFDSSPLVKSEIVVPSNELSLSSPVQGDLDELNPRSNITNGLHASNIDNKGSGLSVAADRVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSSGTIMTMQEERSDKASFRDEKGSNICGQVSHPAETDSTPELSPAATNDGDPEGTGFFSNRSNDEVDDDDPLSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHEIAGSASAASGQTRIRPEESDTISLDLGMGISPASENTPNSQGRMMLPEFGDSQAHTSNSNFKFVHTSGAPVYFGVLNNNSNPYGSRENPSDSSTSLNHSAYPCPQNVGRILMGP*


CDS Sequence:
>Vu_22326.1
ATGGACGCCGCCGAAGCCCTCTCCGACGATCCAAATCGACCTGGGTCCAGGCCCAATTCCGCCCCAGACGCTGCTCCGGCCGGCGGTGGCGCGAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACTACAGGATCCCTATTTATGCTTCATCAAACAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTATTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCATAGTAGACCAAATATGGTTCCTGCAGACCCTAACAATCATGCAAGTGAAAAGTCCACTCAAATAGATGAAGGAAAAACTCAACCTTTTGATTCATCACCATTAGTAAAAAGTGAGATAGTAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAACAAATGGGCTTCACGCATCAAATATTGACAATAAAGGAAGTGGACTTTCCGTTGCAGCTGATCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAGTTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCTAGTGGAACTATCATGACCATGCAAGAAGAGAGGTCTGATAAAGCTTCTTTCCGAGATGAGAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGACTGACAGTACTCCGGAGTTATCGCCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAGCAATGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCCGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGAGTTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACATAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGAGATTGCAGGATCAGCAAGTGCTGCTAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGCTTCGGAAAACACACCAAACAGTCAAGGGAGAATGATGCTTCCTGAATTTGGGGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGGCACCGGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCGTAA


Promoter Sequence:
>Vu_22326::LG5:53108698-53110698(+)
CAATCCACACAAACCCTTTTTCCTTCTCTCTCATCTATCAAACTATCATTGCCAAATTAAAAATACCACACTTTCTTTTATATTTAAATAATTAAATCCATGTGACTTTTTTCAGTTAATATTTTTTATTCTGTCTTTGTAATTGTAGTTTTCCACCCTAATTGTATCCCTTTTTAACTATATGTTTTCGTTCCTAAATAAAGTTTTGGTCCTAGAGAGAATTAATGTGTTTATGCATGAGTTATTTTAAATGATTTTATATGATAAAATCACATTGTCACTGTTTCATAAAATTTTATATGCTATAAATAAATTTAAATTTAAGTAGTTATTTTGAAAATAATTATAATTTACTTATTCTGACCAGTGTATAAAAACTAAAATTGTAAATTAATAATTTATATTTTCAAGTGAAACTAGTGATCATGGATTTTTTTAATAACATAATATTATCTGGTATTAGTATTTAAACATGAATGACTTTATACATATTCTATTTTTTTTTTGTATTTACGTATGGTTAAATATGACTTTTAATCGTAAATATAAGATATAATTTCTAACAAGAATCACATCATTTAAAAAAGAAACTAAGTTTACTCTAATTTATTTTTCTTTTCTGTAAGACAAAACTGCTATTGTTTTTTATCTGTTCATTTAAATTTTCAAACAATATTAACTTTATTTTCTAATTATATACTTTCATCTCGTAATTCTTACATATTTTAATAAATATTGATAAAAATCATAATAGGGAGTTAATAATTATTTTGCATATCGATCTATATTTTTAATAAACTAATACTGTAATTAATGCACGTCAGTTTTTCAAAAATCCCGAATTCATAGAAGTTGTGTTTTTTTTTTGGTGAAAAATATTCACCCTTTTTTTATAAATTCAAAAACATGATTGATTTGCATTAATAGAGTTTTTCCTTTTCTAATAACTTCATTTCCATTCATAAAGTTTGAGCCTAAGATTTTATTTAAAAGATACAACTTAGTTGCTAAACTAATGGCTTATTATTAGTTAAATCATTTTTATTAATATAGTTTCTCATTTTTATAAAAATAATAAATGAGTGGACTTTTTTTTATATTAATTATAAGATATATATATATATATATATATATATATATATATATATATATATTATTTAGTAATTATTAATTTTTATACTTTTAAAAAGTACATTGGGTAATATTAAATATAATAATCTTTTATATCATTTAGCTTTATGAATAGCTTTTAGATTCAAGCTTAATTTTGTTGTAATATTTATTAAACCAATCAAAATAACTATATTTATTGATTTTAATTAATAAATTATTTTTAATATAAAGGACAAGATACAATAACAAGTCTCACCCGTGTTTTTTTAATAAACTTGTGGTGATCATGAAAGAATATATTCTGTGGCACACTTTACTTTATAACAAACTTCTATATAATAAATTTATTAATTTTTATATTAGAAATATATCTTTTAGTTGTTTTGTAAAAAAATTACATTAACAATCCATGATTGTTAAACAAATATAATATACATAAAAATACATGCATTAAAATATGTTTTTTATACTGTATCCAAACACAAATTATTATATATAATAACATTGTCTTTATTATTTATCAATTTTTAGAATAATTTTGTGCTGTTTGAGATAATGTCATTTTTTTTATGTAATACATGTTTTTGTGTTTAAGATGTATCAAAGATTCAAATTTAAGACTACTAAACATATTTAGCCAAATCACCTAGTTACATTTTGAAATTGAAATTACAAATTAAATTTGAACAATTTCATTCATTTGAGTTTTAGAATTCAAATTTGGTACGTAGTTATTGAGTCTAAGGAAATGAAGGATGATAGCAAGAAATTGTTCTTGGCATTTCATATATTATTAATATATTAAGAGACATTAGCTTCACACATTTGTATAACATGGTGATGAGAATCAGTAGTATATAGCAGCACACACCATGAGAGAGAGAGAG


Gene Sequence:
>Vu_22326(+)
GAGAGAGAAATGCAGAGAAAAGGTTAAAATGACAAGCCAAAGACCAAACACAACACTGAACACAGATTCATAATTCTTTTTGAGATTCATTCTCACAACAAGTCAATTTGATCTCTCTCTTTCTCACTGACATACATACCCTTCACATGAAATGACTCCTTTGCCCTCTCATCTCTGCCTCCATTTCCTTCTTCTTTGACTCAACCCTTCTATTTCTGCTCGTCCAAGATACCAACTTTCTTTCTCTGCACCGTAATGGACGCCGCCGAAGCCCTCTCCGACGATCCAAATCGACCTGGGTCCAGGCCCAATTCCGCCCCAGACGCTGCTCCGGCCGGCGGTGGCGCGAGGTACAAGCTCATGTCACCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCGGGGCTCAGTCCGACTTCGTTTCTCGAGTCGCCGGTGCTGCTCTCCAACATGAAGGTTAGTTAGTGGTGAATGCATTTGCCTTTTCAATTTCTAGGGTTTCTGATTATTTTGGCTGGCTTCGAGGCTCGCGTTTGATCCATTTAACTGCTCAGAAAAAAAGAGTAAAGGAGAGAAATGGGTGTGTGAATTCGTTGGCAAATTTGATTTTTGTTTTTCTGTGTTTTTTTAATTTTTTTTTCAGTTGAACTTGGTCAAAGTTGTGTTTAAATGTTTTTACTTGACCCGAGTGAGTTGAAGTACACACAGTGAGTGGCATATAAAAAAATATTGGTCTTTTCAGTGTGATTTTCATGTAAATGCCAAGGGCATCAAAATGGGGCATATGGGACAGTGTTACACTTTGGACGGAATAATTTTTAAAAATGAGGTGATTTAAATGTTGATGAATGGAAGATGCTGTTTGTTTCACGAGAAATTCGATGTGAGTGAGTGACAGAGTGAGTATATGTGCTTTATTTAATCTGGTGGTTGAGGCTAATTTGTTTTTCTTGTTTTTTCTATTTAATTAGTTTTTTGTAATTAGGGTTGGCCCTTTTTCTGTGTTTGATCTTTTTCACTTTGTTAGATTTTATTATTTGTGTTGGGACCGTCAGATTCTGATGCTTGCTCTTATTGAATTCTACATTTTCCCTTTATGCTCAATACGGTGTTGTGTTGGAATATGGCTTTCTCTTACGATTGTTCAACATTGTCATTATTTTCTTTTGCGTCAGTGTTGATTTTTCACATACTGAATCTTCCTTTGCTTCGGTGCTTTTCCTTCTTGTTTTCAACGGTGTTGCATTGCAGGTTTTATAGGAAATGCTTTTCTTTTTCCCTATTTATATGTGTGGAACAACAGAATAAATGCTTTGTCAAGGGTTAGTGGATCCATATTAGTTCTGTATGGCATACCATTGGAGTAATATGAGGAATGTCAGAGATTGTGGGTCATGATTTGTAATTTTGTGAAAGTACAAAAATACATCACATATTTGTTAAATCTTGATGTAATTGTGTGGGTGGTCCTAATCTGTGCATAATTAATGTGGGGGTGGCTTTTCTGAGCTGAATTTATATCAATAGGTTACGTGGTATAGACTCTAAATGATAAACATGCAATATTATCCCGAAGAGAAAACTAGAGTTTTGTATTTGCTCAATTGTAATTGAATCTTTTTGCATAAGTAGCTGATAAATATACTCGATTGCGTGGTAACTCTGATGATTTTTTATGTACTTTCTTTCTGTTATTATTCATGGTCCCTTTAATACTGTGTGTTCTGAAACCTCCTGTTATTTTGTCACTTTCTTTGTCCGTTTGTTGCTCTCAGAAATTAAAATTTTTAAGTGTCTTCGTTTATATATATTTTTGATTCGTTCAGTACTTACCTACTTAGATTATCTAACGCTTTCTCACATACTTTGTAGGTGGAACCTTCACCGACTACAGGATCCCTATTTATGCTTCATCAAACAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCAAGCTTCAATACCAATACTATTGATGACCGAAAACCCAGCTTCTTTGAGTTTAAACCGCATAGTAGACCAAATATGGTAACGAGTTACTCTATGCTTCTGCTAGTAAAATTGGAGAGTATAAACTTTGAACTAAATGGACTTGACACTGATGTTTTTCTCCTTAATTGTATCTGATCATAACCTTTATACTAAGTTAACAAGATAGGATAATTCTATGAAGCTCGAACATGCCTTTTAAACTGTGTGTCCTTGTATCTGAAACGGATCAGACACTGACACACATATGAATTCGTACAACAGTATGGGTGAAGTGTCCAATTTAAAAGACATTTGATTGGTTTTGACATGATTTTGATACCGCTCCAGTACAATGTTAATAAGAACAAATACAATTGTTTTCTAAATACTCATAAACTTCTTGTATAAGTTTCTATTAAGATTATAGAGATAAGAAATAAATCCTATATGATTAGGAATATTTAGATTATATATGCATTGTTGAGAATTTTTGATTTAATCTCCTTTTTATATTAGGTGATAATTTGTTTATATTGTTATATTTGACTAACCTTGTTTATAAATTATAGATGACTTTAAATACATAATTCTTGATTGTCAATTTAAATAATTCATAATGATGTAATATATAGATATGTGTATCTGTGTCTTACATTTTAGAGATTACACATGTTAGTATCTGTATTGTGTCTATGTCGAATTCTATCCAAATCAGCGTCCGTGCTACATAGGGATAACTGGTTAAATATATTGCAATGTTAACTGGAACCAAATTTGGTTTCAAGTTTCTTGTTTGGGTTGATGTTATTTTGAAGATTACTGGTTTCGTGGTACTTACACAGTGCTATTCGTTTATTTAAGGTTCCTGCAGACCCTAACAATCATGCAAGTGAAAAGTCCACTCAAATAGATGAAGGAAAAACTCAACCTTTTGATTCATCACCATTAGTAAAAAGTGAGATAGTAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAACAAATGGGCTTCACGCATCAAATATTGACAATAAAGGAAGTGGACTTTCCGTTGCAGCTGATCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAGTTTCCTCGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAATTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCTAGTGGAACTATCATGACCATGCAAGAAGAGAGGTCTGATAAAGCTTCTTTCCGAGATGGTAATACCTGCTAGATGATTATTGATGCCATTTTATTTGCACTTATGGTAAACAAATAATGTGGCTTTCTTTTTCTCCTAATTCTTGAATTGCAGAGAAAGGATCCAATATATGTGGCCAGGTGTCTCACCCAGCTGAGACTGACAGTACTCCGGAGTTATCGCCTGCAGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTTTCAAATCGGAGCAATGATGAGGTTGATGATGATGATCCCTTATCAAAGCGAAGGTTTGACAGCTTTAGGCCCAAGACCTATGTTTCTTTTTGCTACTCATGTATGTTTGCTGATAGCCAGAAGTTTTTCTATTGAGCAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCCGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGCAATCCTAACCCTAGGTATGTCGGTTCACTCTTATGCCTACTGTAAGGAATGCTGAGATAACCTCATCCTCATTCACAGAGTGGTGCATTATAATATATTCTAGAAAAGTTGCGTAGTTACTATAATATATTGTGAAATGTTGTATATTCTAAATTCTGAATCCTAACCTTTTACAAAGTTTTATTCCAAACCGGTTCTAAATATTCATTCACCAGATTCTGTTGTCCTCTATACCAATAGTCAAATACAAAATACTGGAACTGTAATGGTCAAAATATATTATATTAATGAAAGCTAGTTGATTGTAAGAGCATTATTGCTAAGAATGTGCAAAGTGTCAATGGAGAAGTTTACGGGACTGTAGACTGTTAGATACTTAGATATCAAGAAAGTGTAGATCTATATATATTATTCCTATGCTCCGAGAGGAAAAAAAATCAATATAAAATTTGTCACGATTGTAGTTAGTGAGTTAAAAGGCAAATTAGGGGAAAAGGAGGGCCAGTATGATATTCCTGATTTGCTTGATTCAAGATTTGAGATTTTCTGTGTTTGTAAAGTATTTTCTTTTTCACTGAACTCCCACCCTCCTTTTCAAACCTACCAAATCAATCTTATAACTCCCAAGTGTGGAGGGAGTTGAACCCACAACCTCTATTATCCTTCCTTCTAACTTTACCACTAAACCACCTTGTAACTCCTATTCCTTGGCTGACCAAAACAATATACCAGCATAGTTCTCACTTAAACAACTATCTGTTTGAACTGAAAGATGCTTAAAATGCATTTTGTTATATTTACATTGTAATGTAATCGTTGTTTTGGCATGAACTTCAAAGCATGGAATGAAAATAAAATGGCTGGTCTCTTTTAGTAAGATCCTTTCATTTTGTGGTTGACGACAATACGATGCTTAGTTACATATTTCTTATTAACCTTGTTTCTTACAAGGACTCACTTCATTTCTCAGGAGTTATTACAAATGCACAAACACGGGGTGCCCCGTTAGGAAACATGTGGAGAGGGCTTCTCATGATCCAAAAGCTGTGATAACCACATATGAGGGGAAACATAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGAGATTGCAGGATCAGCAAGTGCTGCTAGTGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGCTTCGGAAAACACACCAAACAGTCAAGGGAGAATGATGCTTCCTGAATTTGGGGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGGCACCGGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTAGTACATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCGTAAAATTGTTTGCACACACAAATAAAAAGAAATACTGAGTTCCATTTTGGTTTTTCTTTTTGGCGGGTAAAGTTTTAAAGGCATAGCTCTTCATTTTCTCTTTGGAAATGCTGATAGTTCTTTTATGTAGATCTTTACATGTTGAGAGCTGCTCTTTAGTAGAATTAGTAGCTGTGCCCCTTCAGGTTGACTCTTAAATCTAATTTCTGTTTGTATAATTATATACAGATTCTTCTGTACAAATATGAAGCTTATACCAAAATTGCTTCAACAAAACCCCTTGTAAAAGTGTTTGAGTTCATCTATTTATAAGATGTAGCTTCTAGCTTGTTACT