Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22190 LG5 50112888 50113638 LRR receptor-like serine/threonine-protein kinase HSL2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 50112892 missense_variant p.Arg110His
G/T 50112898 missense_variant p.Pro108Gln
G/A 50112902 stop_gained p.Arg107*
G/A 50112903 synonymous_variant p.Gly106Gly
G/A 50112916 missense_variant p.Ala102Val
C/T 50112963 synonymous_variant p.Thr86Thr
C/T 50112976 missense_variant p.Arg82His
G/A 50112984 synonymous_variant p.Phe79Phe
A/C 50112987 synonymous_variant p.Thr78Thr
G/A 50112988 missense_variant p.Thr78Ile
A/G 50113021 missense_variant p.Leu67Ser
G/A 50113034 synonymous_variant p.Leu63Leu
G/C 50113043 missense_variant p.Pro60Ala
C/T 50113077 synonymous_variant p.Leu48Leu
A/G 50113088 synonymous_variant p.Leu45Leu
G/A 50113149 synonymous_variant p.Leu24Leu
G/A 50113158 synonymous_variant p.Leu21Leu
G/A 50113163 missense_variant p.Arg20Cys
G/A 50113168 missense_variant p.Ser18Phe
G/A 50113184 missense_variant p.Pro13Ser
C/T 50113193 missense_variant p.Gly10Arg
G/A 50113195 missense_variant p.Thr9Ile
G/A 50113201 missense_variant p.Thr7Ile
G/A 50113208 splice_region_variant&intron_variant
T/C 50113262 intron_variant
G/T 50113263 intron_variant
A/G 50113269 intron_variant
A/C 50113288 intron_variant
T/A 50113289 intron_variant
C/T 50113295 intron_variant
C/G,T 50113304 intron_variant
T/C 50113310 intron_variant
G/A 50113321 intron_variant
C/T 50113346 intron_variant
T/G 50113347 intron_variant
C/T 50113381 intron_variant
G/T 50113397 intron_variant
A/T 50113415 intron_variant
A/G 50113451 intron_variant
C/T 50113452 intron_variant
C/T 50113468 intron_variant
G/A 50113475 intron_variant
T/C 50113481 intron_variant
G/A 50113484 intron_variant
G/A 50113492 intron_variant
T/A 50113533 intron_variant
C/T 50113546 intron_variant
C/T 50113578 intron_variant
T/G 50113580 intron_variant
C/G 50113636 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22190.1
MSPTKNTLTGELPHAIASLRLYSLNLNDNLLRGEIPEILASNPNLHQLKLFNNSFTEKLPQDLGQNLDIQDHFERLITFANRFLGTLPKQYDLTNLQPLAFAGGEGRPHR*


CDS Sequence:
>Vu_22190.1
ATGTCCCCAACTAAGAACACTCTCACAGGGGAACTACCACATGCAATAGCCTCTTTGCGTCTCTATTCTCTCAACCTAAATGACAACCTTCTCAGGGGGGAAATTCCTGAAATTTTAGCTTCAAATCCCAACTTGCATCAGCTGAAACTCTTCAACAACAGCTTCACCGAGAAACTTCCACAAGATCTGGGACAAAACTTAGACATACAAGATCATTTCGAGCGTCTGATTACTTTCGCGAATCGCTTCTTAGGAACGCTCCCTAAGCAATACGATTTGACAAACCTCCAACCGCTTGCGTTTGCTGGCGGAGAAGGCCGACCGCACCGTTGA


Promoter Sequence:
>Vu_22190::LG5:50113638-50115638(-)
CTTGCCGATAGAAAGGGTTGTTGCTGCCATTGTTGTTGTGGTTGATTCTCAAATTGTTCGGCAGCTTGCCAAAATTGACTTTGATCCATGCTTGAGTGAGGTTCCCACCAGTGGTTGAGATTACTTTGGTAGAATTGAGTGCCCATATAGTTAAATTCTTGTCCGAATTGCATCTTGCAAGCATTAGGCACAACACTTCTAGAAAATATTTGTTAGCACAAAAAGATGGAGAAGATAGATAAAGAATCAGAGATAAGAAGATAAAATAAAAATAGAAAAAATAAAAACAGAAAATAAAAACAGAAAACAAAAAAAAAATAAAAAATAAAAACAGAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAATTAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAACAGAAAAAATAAAAAACAGAAATTCAAATTTCAAAATTAAAAAACAAGTAAAAAATAATCAATAATTAAACAAATGAACTAGTTAAACCACGAGTCCCCGGCAACGGCGCCAAAAACTTGATGACAAATTTATGAACACCGAAAAACAGCGCCACAAACTTGTTGAACAATCGGCAAGTGTGACCGAATCGTATCAAGTAATAAAACTAGGTAAGACCAAGTATCGTTTTCCCAAAGGACTCACGGCCTAGTTAGCTATATGATTTGTTGATTATTTAAGACTTGTTAACAATTGATTGTAGGGTTTAAATGCAAAAGACAGTAATTAAACATGTATGCATGAATGTTGATCAATGAAAAAGAGGAAAACAAACACTTTAATGAATTAGATGGACGAGTATGTTGTTGGGGTTATCAATTTCATCTTATCCACTCTCATACTTTTAGGAATTCATCATTCTTTTCATCAATTGCTAATGCAACTCTCTAAATCACCTTGCAAGAAGGCCTATCCTTAATTACGAGTTCATACAATTCCTAGCATTCCTAGTAATTAGTTCTGAAGTGCAGGAGCTTAAAGGCAACCAATATGCTATTGGGAGAAATTCCCCGGATCTAGATTTCCCCGTACGTTCCCATATCGACAAAATCAATAATCATGGCAATGAATGAGTTAAACAAAGCAAGCAATAAGCAAAGAGGAAAAACCCTAGCTAAAGATGAAAGAAAGCATATATCTTAATATAAGACATTAAATCAAATTCCATATATGAGAGTTTCACAAGACTACATTGATTCCCCAACAACAATACAAAGTTTAGTTCACCATATTCATGGTGAAACTAGATGAACAATAATGAAAGAATGAAAGAGATAGAAAAACCCTAGAAAGAGAAGAGGAGAGCTGTCACCATCTCCCAATCTATCCCCAAGGGGTGAAAAGTGTGTTTATGCTTCCTCCCAGCCAAAGATACAAACCCTAAGACATCTAGGTCTTTAAATAGGACATAAAAATAATAGAAAACGAGTCCAGTCCCAAACAGATCATAAAATCGCAGAAAAATGGCCAAAAACTCGTCTGGTTGACTTTTTCCGTATTATGGTTGACTGGTTGACTTTTCTGGTTGACTGGTTGACTTTTCTGGTTTCTGGTTGACTTTTCAGCACTCCAATCATTCGGTACTTCAATTCTTCTTTCAAATCATTCAATTAGCCTACAAAATCAAGGGAATCTTGCACAAAACCATTAAATTCACTTTCAACTCTCTTATTCACAAAACTAAAGCAAAAATATGAGTTCAAGCTAGTTTCTGAGTGTTAAAGGTTGCTTTTAGTATCAATTTTAAGCATGAAAATAATAGTTTTTCAACTGTTATCAATAATAATAGCCATAAGTTTGATTGAACTTGAGTGGATCTAGAACAATTTCTTTTGTGGAATCTTTATTTTCATCTTCCTTCTTTTTATCATCCTTTTTAGGTTCTTCTTTCTTTTCCTCTTTCGCTGCTCCAACAGAAACTATTTCAGTGTGACAGAACTTCCTTAGCTTTGCAACTACTTGTACTGGATCA


Gene Sequence:
>Vu_22190(-)
ATGTCCCCAACTAAGGTTAATTTCTTGTCTTTCATATCCATAGAAACTGACTCCACACATGCAACAGTATTTCAAATACGATTTTAGTAATTGAGCCATTGATGCATTATTCTATGGACTTCATCTCTTGAAACAAAAACCAGTTTCATTCAAGCTAATTCAACCGAATTGAGTGAAAGAAAACCAGTTTTGCCTGTACTACAATATTACTTTTCATTTTTTATATCCTCACTTTTGTCCCCTCAATTTGTTTGAGCGTTGAAAGTAGAGAAGCTAAAGAGATGAGGAACTAGAGAATTTGAAATTTAATTGAATACCTGAAATTCCAAAGACAGCCTTCATTGCTTTTATCTTGATTTTGTCTTCATGTACATCCACCTTCAACACAACTTTCTGTTACAGCAAAATCAAGCATTTGTTGGACCTCTCTCAGAACACTCTCACAGGGGAACTACCACATGCAATAGCCTCTTTGCGTCTCTATTCTCTCAACCTAAATGACAACCTTCTCAGGGGGGAAATTCCTGAAATTTTAGCTTCAAATCCCAACTTGCATCAGCTGAAACTCTTCAACAACAGCTTCACCGAGAAACTTCCACAAGATCTGGGACAAAACTTAGACATACAAGATCATTTCGAGCGTCTGATTACTTTCGCGAATCGCTTCTTAGGAACGCTCCCTAAGCAATACGATTTGACAAACCTCCAACCGCTTGCGTTTGCTGGCGGAGAAGGCCGACCGCACCGTTGA