Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22184	LG5	49926637	49928474	PREDICTED: receptor-like kinase TMK4	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	49926709	missense_variant	p.Ala25Thr
C/T	49926728	missense_variant	p.Ser31Phe
G/T	49926763	missense_variant	p.Gly43Cys
G/A	49926774	synonymous_variant	p.Gln46Gln
T/A	49927118	missense_variant	p.Leu161Gln
G/A	49927123	missense_variant	p.Asp163Asn
T/C	49927133	missense_variant	p.Leu166Pro
C/A	49927134	synonymous_variant	p.Leu166Leu
C/A	49927137	synonymous_variant	p.Ala167Ala
T/G	49927138	missense_variant	p.Ser168Ala
C/T	49927189	synonymous_variant	p.Leu185Leu
C/T	49927201	missense_variant	p.Arg189Cys
T/C	49927473	upstream_gene_variant
A/T	49927479	upstream_gene_variant
T/C	49927758	upstream_gene_variant
C/T	49927843	missense_variant	p.Pro227Ser
A/G	49927923	upstream_gene_variant
C/T	49927932	upstream_gene_variant
T/G	49927941	upstream_gene_variant
T/C	49928114	upstream_gene_variant
A/T	49928115	upstream_gene_variant
T/A	49928121	upstream_gene_variant
G/A	49928126	upstream_gene_variant
T/C	49928203	upstream_gene_variant
C/A	49928213	upstream_gene_variant
C/T	49928216	upstream_gene_variant
C/A	49928233	upstream_gene_variant
G/A	49928256	upstream_gene_variant
A/T	49928260	upstream_gene_variant
T/G	49928271	upstream_gene_variant
C/G	49928331	upstream_gene_variant
C/G	49928349	upstream_gene_variant
A/G	49928473	splice_region_variant&stop_retained_variant	p.Ter260Ter

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22184.1

MAITLLQLSYFFLSVVMTTTLVAAADDAVMSNFLKSLKPPPPGWSQTTPFCQWKGIQCDSSNRVTSISLASKSLTGTLPSDLNSLSQLRSLSLQDNALSGPLPSLAQLSFLQTAYLNRNNFSAVPFAAFASLNSLQTLSLASNPFLSPWTFLTDLTSSTNLIDLDLASVSLSGALPDIFHKFPSLHSLRLSYNNLTGSLPSSLAISTIRARREKINARMKLLQELVPGCDKERVGEERGAGGGVIDDIVDGVAEDDEDE*

CDS Sequence:
>Vu_22184.1

Promoter Sequence:
>Vu_22184::LG5:49924637-49926637(+)

TGTACACACACCTTGTAAATACTTACCTTTATCCCTCCCATCCTGCGAGGGGCTAGCCGAATGGTAACTCTGTCGGACAAGAATTATAGGAATTATAGTCCAATTTAACACGAATTCATCACAGCAGCTCCAAAACACAATTATAGTAAAACCAATTTCGATTACTGTCTTCTTCCTTGAAAACCCTATTTAAACTTCACTAAGCCTATTCTACTCTGCGAATTTCCCCTTTGTCTCCTAAAGAAAACAAAGCCCGCAAATTAGGTTTCCTCGTCGCGGACCAGATTAAATTCAGTAGAACAGAATACTGCCCTGACCTGTTGGTGAACGGACGAAGGGTTCCGGCGAATCAGCGTTTATAGTTTATCATAAATTTCCTAATTGAGTTGCAGCTTGTTGTAATCGCACGGTGTGTTTTTTAATTGAAGATGTGATGTTCATTTCATTGGGTTGTCGCAACAGAGGAGGGAGGCGGGAGCATGCGGACGTGGTGGAGGAGGGCGTTAGGTTGAGAAGACCCTCAAGAAGACGCTCGAGATCTGCGACCACGTGTTCGAGATATACACGGCTTGAACTGTATTTTTTTAGAAACACAAATTTACCTTATTTATATATAACACATTAATCATCTGGTAATTTTGTTTGAACTTATCTATATTTAATTTTGTTTCTGATATGGGTTTCAAGTGCCTTGATGGTAGCCAGAGAATTTGTGAAATATTCTAATTGTTCCTATAGTTGATTTTCCAGATTCTTGATGTGGTTTCGTCCATATCGCCGTAGTTCAATTGGTTCCTTGAGCTCCTATTGTCGGATTTCAGTTTGGAATCATCACATTCATCTTCCTCTCTGCGAATGTTATCGAACAAGAAGAAACTGCATCATCAAAAACTGAGCTGAGGCAAAGTCTTTAACCTGAAAGGCAAAAATATATAATAACATGGCAATTCCCCCCTTGTACCTTCGATCACCGTTTTCTTGCAGCCTCTGAATTGATATCTGTTTGTTAAGACCAAATGAAATTTACCTAGATCAACATTGCTTTGACTTATATGGTTTACTCAAGTTTTTCATTAGTTTTTCCCTTAATTTTCAAGTAACTTTACCTCTGGACTACAACTCTTTCTCGGGGAAAAAAATCAGAAAATAAGAGACCGAATACTAACATGCAAAACAACATCACAATGAGAAATCCTGATGGGAAGAGAAACAGAGGAGGGCTTTGTGGTCTCCACATAATCAGCAAAGTTTATAGAAACCTCCCCAATGGGACTAGCTTTTGGTAAACCCTGCATAAAACGTACAATAAATGACTGAGAGGGAGAAATATTCATACCGTTGAAACCACAAAATGATATATTCTATCACTGATTTTTCCAGTCTTAGACTCCTGAACAAATTTCACAGTTTCATACACCGGATTGTCCCATATGTAAGTTCCGTATCGAACTGCAGCTTTCTCCAATTTTGTAGTTGGCTTTCCAATGTCCCCTAGAACTATATATAGAACCAGTGCATTCATTCCAGATTGAAACACCTGAAATTGAATTATCAAACACGACAACTCATTTATCATGTTGATTTTCGTCCCATTATATGTATAAATTAATTAATTATATGTGTAGTATATGTTTGTGTTTATGCTTCTGTCAGTATTTGATAAGATGCTAGATTTACTTGAAGCATGTTTTAAGAATTCTTTAATCCAGTATAAAAGACTTGACGGAACAATGTCTGTCTAGGCAAGGGATAAAGTTGTTAAAGATTTTAACACTCTACCTAAGGTCTGCAAGGTTTAATTCCTATTTTGGTCCCACTTTTCGTAGGGTTTGTTCAAATTGGTCCTACTTTTTTTCAAAAGTTCACTAAGATCCCACTTTTCGCAAAAACGGTGCAAGTTAGTCCTTTTTGGTTACGGCGTTAAAAAACTAACGGCACAGCTGCCCAGCTGGAAGAAAACTGATGAGCTGTACATTTTTTTGTTGACGTGGCACTCTACA

Gene Sequence:

>Vu_22184(+)

ATGGCAATCACCCTACTTCAGCTCTCTTATTTCTTTCTTTCCGTCGTGATGACTACCACCTTGGTGGCCGCCGCCGATGACGCGGTGATGTCCAATTTCCTTAAATCGCTGAAGCCACCACCTCCAGGTTGGTCTCAGACAACCCCATTCTGCCAATGGAAGGGTATCCAATGCGATTCGTCCAACCGCGTCACCAGCATAAGCCTCGCTTCAAAGTCCCTCACTGGAACGCTCCCCTCCGATCTCAATTCCCTCTCTCAACTCCGTTCCCTCTCTCTCCAAGACAATGCACTCTCGGGCCCCCTCCCCTCGCTCGCCCAACTCTCCTTCCTCCAAACGGCCTACCTCAACCGCAACAACTTTTCAGCCGTTCCCTTCGCCGCCTTCGCCTCCCTGAACTCCCTCCAAACCCTCAGCCTAGCCTCCAACCCTTTCCTCTCACCCTGGACTTTCCTCACCGATCTCACCTCCTCCACCAACCTAATCGACCTCGACCTCGCCTCTGTTTCCCTCTCCGGTGCCTTACCCGACATCTTCCACAAATTTCCCTCTCTACATAGTCTTCGCCTCTCCTACAACAACTTGACTGGTAGTTTACCCTCCTCTCTCGCCATTTCCACAATCCGTGTTTGCTGGTGAAAACTCAACGTCGCCGGGGGAGGCATGTCTGCTTCGGGCCGGGTCTGGTTCGAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCGTGCTCCACGCAAGGGTGTGTTTCGGATCCTGTTGTTGAGAACAAGAACGAGAAGACGACCGCGAAGAGAAAGGAGCGAGAGAATTAGGGTTCCTGTTTACAGTATAATTGAACGGTCAAAACATAAAATAGTACATGATTTTGTGGAATTCAGGTTAGAGGATCCTTGAAGAAGAGTAAGAGCGTCGCTGATGAGACCTCCGTTGACAGTGAGAAGCTTCCCTATGTCCACGTTCGAGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAAAGGGTAAAGACTTGACTAATCACTAATTAATTTGTTTAATTTTGATCACTTTAGTGTATTTTATAATTTTACCGACTTTTAATTTTCAATTATTTTGTTGTGATATAACATAACTGAGTTTCTTTCTGTTGTTGTAGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCAGGCTGCGACAAGGTTGGTTTCTTTTACAAGTGCCACGTCAACAAAAATGTACAGCTCATCAGTTTTCTTCCAGCTGGACAGCTGTGCCGTTAGTTTTTTAACGCCGTAACCAAAAAGGACTAACTTGCACCGTTTTTGCGAAAAGTGGGATCTTAGTGAACTTTTGAAAAAAAGTAGGACCAATTTGAACAGACCCTACGAAAAGTGGGACCAAAATAGGAATTAAACCGGTCTGTAATATAGCCAAGCCCACTAGTAGGGGAATGACTATGATTTCTTTGTTTAATGTTATTTGTGAGATGTATTATTTGATTATTTTTCTAACTTCAATGTGATGTATATGTCCTTTTCAGGTTTTAGTCAGGTGCCTCGCAGATTCAAGAGCGGCTTCAAGAAGGACATAATCGGTTGATTATTATTTGAGTTTTTAAATTTGGACATTAGTTTAGGGTTTTCGCTAAGTAAATCAAATATGGAGGTTGCACCTACAAAGAAAGGAACGACTATTACTGTCTAAGCAACATGAGAGAGGAGGTGTATAGGAAAGGGTGGGGGAGGAACGTGGTGCTGGTGGTGGCGTCATTGACGACATTGTTGACGGTGTTGCAGAGGATGATGAAGATGAATAA