Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22132	LG5	46144491	46148204	PREDICTED: putative disease resistance RPP13-like protein 1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/C	46144870	stop_gained	p.Leu1112*
T/C	46144879	missense_variant	p.Lys1109Arg
G/T	46144975	missense_variant	p.Ser1077Tyr
G/A	46144979	synonymous_variant	p.Leu1076Leu
T/C	46145086	missense_variant	p.Gln1040Arg
A/T	46145118	synonymous_variant	p.Arg1029Arg
A/T	46145281	stop_gained	p.Leu975*
T/A	46145517	synonymous_variant	p.Thr896Thr
T/A	46145649	missense_variant	p.Glu852Asp
G/A	46145984	missense_variant	p.Leu741Phe
G/T	46146013	missense_variant	p.Pro731Gln
C/T	46146111	missense_variant	p.Met698Ile
T/C	46146355	missense_variant	p.Tyr617Cys
A/T	46146618	synonymous_variant	p.Ser529Ser
T/A	46146625	missense_variant	p.Asp527Val
G/A	46146864	synonymous_variant	p.Gly447Gly
C/A	46147098	synonymous_variant	p.Leu369Leu
C/A	46147118	missense_variant	p.Ala363Ser
A/C	46147120	missense_variant	p.Ile362Ser
C/T	46147129	missense_variant	p.Gly359Glu
A/C	46147195	missense_variant	p.Ile337Ser
T/G	46147196	missense_variant	p.Ile337Leu
G/A	46147397	synonymous_variant	p.Leu270Leu
C/G	46147442	missense_variant	p.Asp255His
C/T	46147523	missense_variant	p.Ala228Thr
C/T	46147611	synonymous_variant	p.Thr198Thr
A/T,*	46147668	synonymous_variant	p.Leu179Leu
T/G	46147783	missense_variant	p.Gln141Pro
T/A	46147785	missense_variant	p.Arg140Ser
T/C	46147970	missense_variant	p.Ile79Val
C/T	46147978	missense_variant	p.Arg76Lys
C/A	46148076	missense_variant	p.Glu43Asp
A/G	46148087	synonymous_variant	p.Leu40Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22132.1

MALCMVGEALISACVEILIKRIASREFRDFFSSRKLNISLLDELKTKLLVLNAVLNDAEEKQITDSAVKQWLDELRDVILDAEDLLDEINTHALRCKGEGKSRKFATKVRSLLSSRFKNFYRGMNSKFEAISRRLEQFVRQKDILGLQSVSRRVSYRAVTDSLVDSVVVARENDRERLLSMLLCDDGDGMSNDVEVITVLGMGGLGKTTLVQCLYNDCEVQSHFDMTAWACVSDDFDILKVTKKIVESLTSKDCDITNLDVLRVELKNNLRDKKFLLVLDDLWNEKYNDWHNLIAPFRSGRKGSKIIITTRQQRVAQVTHTFPTYELKPLSDENCWIILARHAFGSENFHNYPILEEVGKKIARKCNGLPLAAKTLGGLLRSNVDVGEWNRILNSNMWAHDDVLPALRISYFHLPAHLKRCFAYCSIFPKQHLLDRKELILLWMAEGFLQHIHEDEEMESVGNDCFNELLSRSLIQKENAVAEENFRMHDLIYDLARLVSGRSSYHFDGSEIPRTVRHISFLREMFDISEKFEGLYELKCLRTFLPRLSYPFVQCYLTKMVSHGWLPKLRCLRILSLSKYTNITELPNSIGNLLHLRYLDLSYTSIESLPDETFMLYNLQTLILSNCESLIQLPQKIGNLTNLRHLDISDTNLTEMPTQICNLQELRTLTVFIVGRQDGLSIRDLSKFPYLQGKLSIMNLQNVVNLVDVFGANLNKKEQIEELILGWGSDPQEPQFEKDVLDNLQPSTNLKKLSVKYYGGTSFPNWIGNFSFSKITVLTVSDCNNCLSLPPFGQLPSLKELVIKRMKMVKKVGHEFYGSNVDSQLFQPFQSLENLEFEDMSEWQEWLPCESEGRNFIFPCLKTLYLCKCPKLRGTLPTHLPSLTNVIFSECNQLVTELSDVHWNKSIEAIHIAEGQEALLSMLDNFSYCELLIEKCDSLLCLPRMLLAANCLQKLTLTNIPSLIYFPADCLLTSLRSLEIWHCRNLEFISHNTCPKFTSLETLRIWNSCCSMTCFSLGCLPVLQELNIRFIPNLAAITTQGGEAAPKLVDFIVTDCEKLRSLPNQIDLPSLEHLDLSGLPMLESLSPRCLPSCLRSLHVDVGILSSVSKKELSVLFQRLSSLSHLLLKGLGEEDLVNTLLKQQSLPTSLEYMFLHNFSDLKLLEGKGLQNLTSLQMLQMYNCPSIESLPEGQLPHSLQVLSLRECPLLEARYQNHNGKYWYKIAHIPAIKINEKVII*

CDS Sequence:
>Vu_22132.1

ATGGCCCTATGTATGGTGGGAGAGGCTCTTATCTCTGCTTGTGTGGAGATCTTGATAAAAAGGATAGCTTCAAGAGAGTTTAGAGATTTCTTCTCCAGTAGAAAGCTGAATATTTCTTTGCTGGATGAGTTGAAGACAAAGCTATTGGTACTTAATGCTGTGCTCAATGATGCTGAGGAGAAGCAGATCACTGATTCTGCAGTGAAGCAGTGGCTTGATGAGTTGAGAGATGTTATCTTAGATGCAGAAGATTTGTTGGATGAAATCAACACACATGCTTTGAGATGCAAAGGGGAAGGCAAATCTAGAAAATTTGCCACCAAGGTAAGATCTTTGCTTTCTTCTCGCTTTAAAAACTTCTATAGGGGTATGAATTCCAAGTTTGAAGCAATATCTAGAAGGCTAGAACAGTTTGTTAGACAAAAAGATATTCTTGGCTTGCAAAGTGTTTCTAGGAGAGTGTCTTATAGAGCAGTAACAGATTCACTGGTTGATTCTGTTGTGGTTGCTAGAGAGAATGACAGGGAAAGGCTACTTAGCATGCTTCTATGTGATGATGGTGATGGCATGTCTAATGATGTAGAAGTGATCACGGTATTGGGCATGGGGGGTCTGGGAAAAACAACCCTCGTTCAATGCCTTTACAATGATTGTGAAGTGCAGAGTCATTTTGATATGACAGCTTGGGCGTGTGTGTCAGATGATTTTGATATTCTCAAGGTAACGAAGAAAATTGTAGAATCTCTCACATCGAAAGATTGTGACATTACTAATCTTGATGTTCTTCGTGTTGAATTGAAGAATAACCTAAGAGATAAGAAATTTTTGCTTGTGCTTGATGACCTTTGGAATGAAAAGTATAACGATTGGCATAACCTAATAGCACCTTTTAGAAGTGGGAGAAAGGGAAGTAAAATCATTATTACAACCAGACAACAAAGAGTTGCACAGGTCACACATACATTTCCTACTTACGAGCTGAAACCTCTTAGTGATGAAAATTGTTGGATCATACTGGCCAGACATGCATTTGGAAGTGAAAACTTCCATAATTATCCAATCTTAGAAGAAGTTGGGAAAAAAATTGCAAGAAAATGTAATGGTCTGCCATTGGCAGCTAAAACATTGGGAGGCCTTTTGAGATCAAATGTTGATGTTGGGGAATGGAATAGAATTCTGAACAGCAATATGTGGGCACATGATGATGTTTTACCAGCTTTGCGCATAAGTTATTTTCATCTTCCAGCACATTTGAAGAGATGTTTTGCTTATTGCTCCATTTTTCCAAAACAACATTTGTTGGATAGAAAGGAATTAATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACACATTCATGAAGACGAAGAAATGGAATCAGTGGGAAATGACTGTTTCAATGAGTTATTATCTAGATCCTTAATTCAAAAAGAGAATGCTGTTGCAGAGGAAAATTTTCGAATGCATGACCTCATCTATGATTTAGCTAGACTTGTGTCTGGAAGAAGTTCTTACCACTTTGATGGCAGTGAAATCCCAAGAACCGTTCGCCATATATCATTTCTCAGAGAGATGTTTGATATCTCTGAAAAATTTGAGGGCTTGTATGAGCTGAAGTGTTTGCGGACCTTTCTACCACGATTGTCATATCCATTTGTTCAATGTTACTTGACCAAAATGGTATCACATGGTTGGCTGCCAAAACTAAGATGTTTGCGAATACTTTCGTTGTCTAAATACACAAACATCACTGAGTTGCCTAATTCGATTGGCAATTTGTTGCACTTGAGGTATCTGGATCTTTCCTACACCTCAATTGAAAGCTTGCCCGATGAAACATTTATGCTTTACAATTTGCAAACTTTGATATTATCAAATTGTGAATCTCTTATTCAATTGCCGCAGAAGATAGGAAATCTGACTAACTTACGCCACCTTGACATCAGTGACACTAATTTGACAGAGATGCCAACACAAATATGCAACTTACAAGAACTCCGTACCTTGACAGTTTTTATTGTTGGAAGACAAGATGGACTAAGTATCAGAGATTTATCCAAATTTCCCTATCTTCAGGGCAAGCTTTCCATCATGAACCTGCAAAATGTCGTCAATCTTGTGGACGTTTTCGGGGCCAATTTAAATAAAAAAGAGCAGATCGAGGAGCTTATTCTAGGATGGGGCAGTGATCCACAAGAGCCGCAGTTTGAAAAGGATGTACTTGACAACTTGCAGCCATCAACAAATTTGAAGAAACTCAGTGTCAAATACTATGGTGGCACTTCCTTTCCAAATTGGATTGGAAATTTTTCATTTTCCAAGATCACAGTTCTTACTGTAAGTGACTGCAACAATTGTTTGTCACTTCCACCGTTTGGACAACTACCTTCTCTGAAGGAGCTTGTTATCAAAAGGATGAAAATGGTGAAGAAAGTTGGTCATGAGTTCTATGGCAGCAATGTAGACTCACAGTTGTTTCAGCCATTTCAATCACTGGAGAATCTGGAATTTGAAGATATGTCAGAGTGGCAGGAATGGCTACCATGTGAGAGTGAAGGAAGAAACTTTATTTTTCCATGTCTTAAGACTTTGTACCTCTGCAAGTGCCCCAAGCTGAGAGGAACCTTGCCAACTCATCTACCTTCATTGACAAATGTGATTTTCTCAGAGTGCAACCAGCTGGTGACAGAATTATCTGATGTGCATTGGAATAAATCAATTGAAGCAATACATATTGCAGAGGGACAAGAAGCCTTGTTGTCTATGCTTGACAACTTCTCCTATTGTGAGCTATTGATTGAAAAGTGTGATAGCTTACTATGTTTGCCCAGAATGCTACTTGCTGCAAATTGTCTTCAAAAGTTGACTCTTACAAATATCCCATCTTTGATTTACTTCCCAGCTGATTGTTTGCTCACATCATTGCGATCACTTGAAATTTGGCATTGTAGAAACTTAGAGTTCATATCTCACAATACATGTCCAAAATTCACATCACTTGAAACACTGAGAATATGGAATAGTTGCTGCTCCATGACATGTTTTTCATTAGGTTGTTTACCTGTCCTTCAAGAGCTTAATATCCGTTTTATTCCCAACTTGGCAGCAATTACTACTCAAGGAGGAGAAGCAGCTCCGAAATTAGTTGATTTTATTGTCACTGATTGTGAGAAACTCAGATCACTTCCAAATCAAATTGATCTCCCTTCCCTTGAACACTTGGATCTATCTGGGCTTCCCATGCTAGAATCATTGTCTCCAAGGTGTTTGCCTTCTTGTTTAAGATCACTTCATGTTGATGTTGGCATACTATCATCTGTATCCAAAAAAGAGTTAAGTGTTCTATTCCAACGCCTATCTTCTCTGTCACATCTTCTACTCAAGGGTCTTGGTGAAGAAGATCTTGTTAACACTCTTCTGAAGCAGCAGTCCCTGCCTACTTCCCTAGAATATATGTTCCTTCATAATTTCAGTGACTTAAAGTTGTTGGAAGGAAAAGGGCTTCAAAATCTCACTTCTCTCCAAATGCTTCAAATGTATAACTGTCCTAGTATTGAGTCCTTACCAGAGGGTCAACTTCCACACTCTCTTCAAGTACTCAGTCTTAGGGAGTGCCCTTTACTGGAAGCAAGATATCAAAATCATAATGGGAAATACTGGTATAAAATTGCTCACATTCCTGCAATCAAGATAAATGAAAAAGTCATAATATGA

Promoter Sequence:
>Vu_22132::LG5:46148204-46150204(-)

ACTGAAAGTTATCGTTCTACCCATACTAGGTTTTACAAAGCCTCTTTTCGCAAACACAAAGAGTTTCTTTGGTAGTCATAACTATAAAACTCTCAATAAAAAGGTATTTTAGAAACTAGGTTTAGCCAAAATATATAGATTCTCTCTTTTGAAAATTGGGTCAAAAAGCTTAAGAGTCAAGTTGCAACTGTCGCTCATAATCGACTATTTTAAGAGATAATCGATTATCACAAACTTTAAAAAAAAGTTCTCGATGTGTTAATCGGTTACTAGAAGGTGATAATTGATTATCATACAGACTTTTCTAAAATTGATTTCTTTATGTGATAGTTAATCATTATAGTTAATCGATTATCATATATAAAGCGTTTTTTGATCATTTAAAACTTTTCTAAGTGTACAAAGCTACTTTATGACTCTCTAAATTAAATCACACACACAATTTTTTATAATGACTTATTACAAAAAGTTTTATTTTTAAACATATTAAAGTAAGTATTTCAATATTTTTGGTATGTTTGAGTTTTTGGACTTGCTTTTATCATAAAAATATCTTGATTTTCATCATCTTCTCTTCTTTGAACAATTTTTACCTAAATCATTCAAATTTTTTATTATTTATTAAAAAAACTAATATAATTTGAATTAAAAATAATTTAACATTCACACGCTTTTACAGTAAAATAATGGGGAGAAAATATTATTTTGAGGAAGGTTTATATGAAGAAGATGAGTTGATATCTCCGAGACATTCAATTGGGCATCAGTGCACATCGATGCTGCTGGAAACTTAGTTGAATCCATAAGTTTCTTTGGGCAGCAAGAGGAAGCGTTCCTTTAGCACACATTGCTATATACAAAGTTGGTTGGTCATCAGGTTCTGAGAATTAGACATCATTCGAGCATTTGATGAAGGCATTGCAGATGTGTTGACATCATTTCTATTTCAATTAGACCTAGAGAACCGTAAAACAGAACGACTATTTCCAAGATATATTCGCCATGGGGGCTTTCTATACTATGCAGAAAGGCATATATACTAATTTTGCTGATAATAGTGATGCAAAGAATTATACAATATCCAAAAATGTGTAATGGGCACATTCTGTAGCAGCTAGAACTATACAAGGAAATTGAAATTAAAGTAATTTAAAAAATAATTCTTATAAAATTCACATTTTAAATTTTATAATTTTCTCCTAAAAATATCTTTCTTTTATACTATTAAATTTTGTACGATTTTAAGTTTTAAGTTTGATCATACATACAATACAAGGAAAACATTAACATTGATATACAAATTAAAAACATTCTCGGGAACTCAAGTCATAAAAACGTAGAAGGATCTCAGCAGAAACCGTGGTAGAAAATGGTAATAGAGTAATCAAAGAAGAGAGAAAATGGTTAGAGTTATATGGATAGCACGTGCGATGAACTATTTACCATAAGAATTGGTGTGTGGGAGAAAATATCATTGGGGAGTAACTAGAGATGAAATAATGAAAATAATAAAAGAAAATAAAAAATCTAATTAAAAATAGAAAATAATCTAACTAAAAATTAAAAATAAAATTGAAATTTTAGATGAATAATAAATACTCGTTTCCTACCTAGCGGGTACTGATATAACGTTACTCGTAAATATAAGTTATTATGTCTAACATATTTTATCGACATAATTATGGTATTTTTGTCCATATCTTTCTTTAGCCATTGTTTTAAATGAGTGACGTGAGGAGAGAAAAAAGATGGATGAAGCACCTAAGTAAAGCCCAAGAGGACTTCAACAAAGTCAATTTTGAAACTTCTCTGCTGTGGATATGTAGGACAACAAATGCTAGAGATGAAGGAAGAGGTTCACGCGTTCACAATAACAACACTGAAATCAAAGAAAGCATTGACTTAAACCTTATCATATTTCAATTTGAAAGATTTATTGTTTTTATCTCATTTAGAAAGAGTTTCAGTGTTCTAATTGAATTTGTAAAACAAGGGAAGAA

Gene Sequence:

>Vu_22132(-)