Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22110	LG5	45126140	45127594	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/A	45126446	missense_variant	p.Lys383Asn
G/A	45126453	missense_variant	p.Ser381Phe
T/G	45126581	missense_variant	p.Lys338Asn
G/A	45126653	synonymous_variant	p.Cys314Cys
A/G	45127184	synonymous_variant	p.His137His
G/A	45127301	synonymous_variant	p.Gly98Gly
G/A	45127532	synonymous_variant	p.Cys21Cys
A/G	45127556	synonymous_variant	p.Asp13Asp
A/G	45127589	synonymous_variant	p.Asp2Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22110.1

MDRRDNGKQAVSDHVLVLDSCTKEKMKRSVLGSCKAEVESVADEENPSPKLSQCDICLKIFGCGKALGGHRRSHFMKQQQQKKVKTRFTDNHTSKPSGDNNIRVICDFDDDDGKHICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSYYYSPSSSFNSDSMEKNKDDHDVDDGGDRLISPYEHRRNEIDLLMCTSPSWLCKDTRGRSSIGAYQAAETLFYMSCSKYFSSHDWNRVFPKKDEVPPKSAPTLIKQRKRKTFESSPSKKDKVKKIKFLFKGELNWGSTSNGVGECDGEGNRLNRCKGLSESGVEHNHDEKKMKSFDDLKGESVTPTMQDHVGPSDVKKINMDKKGKNGKKLVLNSRTKDSESEKAASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPSEAVAEQNNSSSSSNMNKMEDPLFNETTLADQPCQSSGVKKLNFDLNELPCANDED*

CDS Sequence:
>Vu_22110.1

ATGGATCGCAGAGATAATGGTAAACAAGCAGTTTCTGATCACGTTTTGGTTTTGGATTCTTGCACGAAAGAGAAGATGAAGAGATCCGTTTTGGGTTCTTGCAAAGCTGAAGTTGAATCAGTGGCGGATGAGGAAAACCCTTCCCCAAAACTGAGTCAGTGTGATATCTGCCTCAAGATTTTTGGCTGCGGCAAGGCTTTAGGTGGTCACAGAAGATCCCACTTTATGAAACAGCAGCAACAAAAGAAGGTAAAGACCCGTTTCACTGATAATCACACATCAAAACCTTCTGGCGATAATAACATTAGGGTTATCTGTGATTTTGACGATGATGATGGCAAACACATTTGTTGTATTTGCAAGAAGGAATTTCCCACCAAGAATGCTTTGTTTGGTCACATGCGGTCTCATCCTGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAAAAGAACTCATCTTCTCCTTCTTCTTCTTACTACTATTCTCCTTCTTCTTCCTTCAATTCTGATTCAATGGAGAAGAACAAGGACGATCATGATGTTGATGATGGTGGCGACCGACTGATCTCACCTTATGAACATCGCAGAAATGAGATTGATCTTTTAATGTGTACTTCACCCAGCTGGCTTTGTAAAGATACAAGAGGCAGAAGCTCTATCGGTGCGTATCAGGCTGCTGAAACTCTTTTCTACATGAGTTGTTCTAAGTATTTTTCTAGTCACGACTGGAATAGGGTTTTCCCCAAGAAGGATGAAGTGCCGCCAAAGAGTGCCCCAACCCTAATCAAGCAGCGCAAAAGGAAGACTTTTGAATCGTCACCCAGTAAGAAAGATAAGGTGAAGAAGATAAAGTTTTTATTTAAAGGTGAATTGAATTGGGGAAGCACGTCTAATGGGGTTGGGGAATGTGATGGTGAGGGTAATAGGCTGAACAGGTGCAAGGGTTTATCTGAATCTGGGGTTGAGCATAACCATGATGAGAAGAAGATGAAGAGTTTTGATGATTTGAAAGGTGAATCTGTTACCCCAACTATGCAAGATCATGTTGGTCCTTCTGATGTGAAGAAGATTAATATGGATAAGAAAGGGAAGAACGGTAAGAAATTGGTACTGAATTCAAGGACAAAAGACTCGGAATCTGAGAAAGCAGCAAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGAAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGATCAGTGCACAAAGAGAAGAATACTGTGAGCATTGATGAGCCAAACCCCTCGGAAGCTGTAGCTGAACAAAACAACTCTAGCAGCTCCAGTAACATGAACAAGATGGAGGACCCATTATTTAATGAAACAACCTTAGCCGACCAGCCATGCCAATCTTCAGGTGTCAAGAAACTGAACTTCGATCTGAATGAGCTGCCTTGTGCCAATGATGAGGACTGA

Promoter Sequence:
>Vu_22110::LG5:45127594-45129594(-)

TAATTAAAATAGTCTGTAAAGTAGTTAAATAAATTAGTAGCTAGTTCATTGATCTTACCAAATACATTATATATACAAAAATTTATATCAATATAAATTTATTTGATACTTAATTATATATAGTATACTAAAACATACATATTTTTTAAATATATTAAAATATGAATAATTAAATCGTATTTTTATTTTTTCAATTCTAATACAGTTAATGTGCATAATCATGATAAATTATAATTACAACATTCACTTATTAACAATAAATATCTGGTAAAGTTAGACTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATTTATTAGTTGTAAATAAAAGGTTACTAAATATATCTTTTCTGTATTGACATCACACGGTAATTGTTGTTGGCTCAAATTTGTACATTATCTAATCTAACAGGTTTTTCTTGGAAAATTGTATAGGTTTGTTTTAACTAGCACTATGATACCGTATGACAATATTGAAAGCTATCTATACATATCTGTTTATCTATCTAACTATCTATCTATCTACATCTTTATCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAATAATTGTTATCATGAATTCATATAAAAAATAAATTTTATTATCATGTTATTATTATTACTTATATAAAATTAAAATTTAAGAAAAATAATAATAATATATTGTATTAAACTTTGAAAAATATATATTTTATCAATTATATATATATATATATATATATATATATCACTAAGAATTTTATAAAAAAATGTATAGATTATTTATGTCAAAATAATTTACAATCTAGTGGTGAATTTAAAAGAAAAATAATATAATTTAAAAATATTGATTGATATAGCAATCTGGAAAAGTTATAATGAAATATTTGGATTTCTTCATTTTTTTTATATATACAAAATTTGTTGACATTGTATTATGAAAAGAACAAGCAAGTACTAGCTCAATTTTCTCTAAACAACATTGTTCTCAACCTAGTAGAGCAAGAGAAATTGTATATATGTATTACATAACAATCTTGAACTCCTTAAATAACAAAAAAATTATGGTAGAAACGAAAATAGAAATTAATATGTAATTTAATATCATAAATAATTATTTAAAAAATTCTTAGGCCTTATTAGTCTAAATATTAAGATGTATTGAACAAGTATTTTGTGTTTGAAATTAGACAGGAGCCATTGAGTTCAGTAGAAGAAAACACTAATTTCTCATATTAAAGTGTGAAAGAGATTTAATAAAATAAAGAAGACACGTAGAATATAAACATTGGAGGAAAGAGTGGATTATATAAAAAAGTTTAAAATAGAGAAAACAGTTTGGGAAGAAGCTATATATTTTAATATATAGGAAAGAGATTATGTCAATATTCTCACAAGAAATAAAGATTTTCTGAGTAATTAGGGTGAAGGAATAAGATTAGCGTAATAATATAATATATTTGAGACAGAAAGCTTTGAAAGATAATTTGACCTAGAAAAGATTTCTATATCAGAGATAAAAAAAAGGTTAATTAAGATAATTAAAGAGTCATTGGCAGCATGAAATCTGTTATTTTTGAAAATATTGAATACTCACTTAATTGCTGCATCTCTTTGTGAGAGATTATATCTTTGCAGGCTTTCTCTCTCCTGTGTTCTTTCTCCCCTCTTCTCAGTTAAGATGATTATTTTATCTTCCTTTTATCTCTGTGAATCTTCGGAATAATCCAACAAACACTCTAAGTTTCTGTTCTTCGGATTTGTTCCACAATTTTCTACCTTCTCACCCTTCAATTCTCATCTCTCTTGAATCACTCTAAAGGTAAAAAGGTTTCTTTGGTGCATGATTGTGGCATTTTTATTTTTCCTTCTTTGATTTTTGGTTTCAGATTGTTCTTTCTTCTTAACCCTAGCTCATTCTTTGGTTTTCTGTGTTTCTAAG

Gene Sequence:

>Vu_22110(-)