Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_22107	LG5	45034785	45035747	PREDICTED: uncharacterized protein LOC108345409	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
G/T	45034801	missense_variant	p.Pro316His
T/G	45034815	synonymous_variant	p.Leu311Leu
G/A	45034829	missense_variant	p.Leu307Phe
C/T	45034936	missense_variant	p.Arg271Gln
A/G	45035005	missense_variant	p.Val248Ala
A/C	45035036	missense_variant	p.Ser238Ala
A/C	45035217	synonymous_variant	p.Ser177Ser
T/A	45035245	missense_variant	p.Glu168Val
T/A	45035312	missense_variant	p.Met146Leu
A/G	45035368	missense_variant	p.Val127Ala
A/G	45035382	synonymous_variant	p.Asn122Asn
T/G	45035388	missense_variant	p.Gln120His
T/A	45035389	missense_variant	p.Gln120Leu
G/A	45035406	synonymous_variant	p.Val114Val
C/G	45035502	synonymous_variant	p.Ser82Ser
C/A	45035519	missense_variant	p.Gly77Trp
A/G	45035673	synonymous_variant	p.Asn25Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_22107.1

MDLSGKRVSVSGEGSSSNGGAGGSNLQLVPYSENKKVCPFCQREFKCGKSLGGHIKVHKKSRRTLKFTHKKKSNRRGLGSSSALTIPTPLNVVRVCEIVAPLRIVENGASGAAVTTLRIQANGASGVEEPLRIDETGASGGEIHDMSMSLVGCGWKTKGRRGSNEETEKLMRANHYSYSDDEYEECDVEDSCDEDDYDNIKLRKWLRSRGYGTGAHKICWTKRMLMCKVCNQYFRTLSGVISHVDECVLTNSEVEMEREGSEENGRLEVDRAVDNAVGEVAKMPEDAPVTKHNGVSSSSSSVQHKHLQLDLNQTPPPEED*

CDS Sequence:
>Vu_22107.1

ATGGATCTTTCTGGGAAAAGGGTTTCAGTTTCAGGTGAAGGGAGCAGCAGCAATGGTGGTGCTGGTGGCAGCAATCTTCAGCTTGTCCCTTATTCAGAGAACAAAAAAGTTTGCCCTTTCTGCCAGCGTGAATTCAAATGTGGAAAATCCTTGGGAGGGCACATCAAAGTGCACAAGAAGAGCCGCAGAACCCTCAAGTTTACCCATAAGAAGAAGAGCAACAGAAGGGGGCTTGGATCCTCTTCGGCGCTAACAATCCCAACACCCTTGAATGTTGTAAGAGTTTGCGAGATCGTAGCACCACTCAGAATTGTTGAGAATGGAGCAAGTGGTGCTGCGGTCACAACACTCAGAATTCAAGCAAATGGTGCAAGTGGTGTTGAAGAACCACTCAGAATTGATGAAACCGGTGCAAGTGGTGGTGAGATCCATGATATGTCGATGTCCTTGGTGGGGTGCGGATGGAAGACAAAGGGAAGGAGGGGAAGCAACGAAGAGACGGAGAAGTTGATGAGAGCGAATCATTATTCTTATTCCGATGATGAGTACGAGGAATGTGATGTGGAAGACTCGTGTGACGAGGATGACTACGATAACATAAAGTTGAGGAAATGGTTAAGGAGTCGAGGGTACGGAACAGGTGCGCATAAGATCTGTTGGACTAAGAGAATGCTGATGTGCAAAGTCTGCAATCAGTATTTTAGAACTCTGTCTGGTGTGATCAGTCATGTGGATGAGTGTGTCCTAACCAATAGTGAAGTTGAAATGGAAAGGGAGGGAAGTGAAGAGAATGGTAGACTTGAAGTCGATCGAGCTGTTGATAATGCTGTTGGTGAAGTTGCCAAAATGCCTGAAGATGCTCCAGTCACAAAACACAATGGAGTTTCTTCTTCTTCTTCTTCTGTACAACACAAACACCTTCAATTGGATCTAAATCAAACGCCTCCTCCTGAGGAGGATTGA

Promoter Sequence:
>Vu_22107::LG5:45035747-45037747(-)

TTTGTAACCTTAACCAGTAAAATTCACGAAGCTTCTTAACACTTCACTCAATGCAAGTAAATAAAAACGATAAATGCTATCAAAAGCTTTTTAATGTATTTAATTTTATGACATCACTCTATATTTATTACATTAATTGCATTATTTAATAGAACTCTCACTTTTCTCTTCTCAATTCTTATCACTATAAGTGACAACAATTTCTCTTACAAATTAATGAGTTTTTACAATAAGTTTAAATTTTTATTAATAATAAAAGCGAGTTAAGATAAATATGTTAAAAATGAATAATTAACTTTTGAATAAAACATTTCTGTAAAGAAACAAAAATTTGTTTTCATAAAGCATGTCTTTCCAATAAGAAACTATAGGGATCACTGACCTTAATAATAACTCTAAAACTTATACTATTATTTTTAATTTACATTTATTATGTGTTCATTTAACTCATAATTAATATGTAAGAAGAAAAATATTGAAAGAAAAATAAAAGGTTGGCGAAAGAAATGAGAATTAACTTTTTTTTTGAGAAAATAGTTAATGCTTTGATAATGAAAAATGAAATAAATTGATACAGAATGAGGTTAGAGAAAAATACTTTCACACACTCAAATTATTTATATTTATTTAATACTATTCTTTTTTATTTTTTATTTATTTATTTTTTAAAAAAATAAAAAAAAGTGTTTTTAGTCATTTTTAATAGTATAATATGTATTGAAGAAATGTAAATATGTGTCATCCTTCTTTTCATAAGTTGAGACACATACACTCATTTAACATATTTTTTATAAGAATAATAATATGATGATATATTTTTATATTCATTTGACATACAATACAATAATAAAATGGTTAAAGAAGAATAAACTTTTGTATTTTTTAAAGAAGAAAGAAAGTAACAAATAAGAAAGCATAGTATTAAATGAATGTCAAAAATTTATGTGTATTAAAAGTATCCTTTTTCTTTTTATAATAAAAGAATAAAAAATAATAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGTCGTTTCTGGTTTTCGTCCCTCTTTCAAAGTAAGGTACAATTTGGTCCTCATTCTTTTCGAAAACGTTCGTTTTAGTCCTCGAAAATTAACACCGTTTAAAAATTTGGTCCTCATTTAGCAACAAAATGAGGACTAAAACCAAAATTCCGAGGACTAAAACGAACGTTTCGAAAAGAACGAGTACCAAATTGTACCTTACTTTGAAGGAGGGACGAAAACCAGAAACGACCAATAGTTTAGGGACTAAAAACATATTTAACCCAAAATAATATATTAAATAAGTGTAAATGAATGTAAAAGATGTGAAAATAGATTTTTCCCATAACAAATAGATTTAACACACATAAATTTTGTACATTCATTTAACATCGTCCCTTCTTACATTTACTCTCTTCTTTCTTTAAAAAAAGTACAAAAAATTATTTTTTTATGATAAAAAACGATTATATCACATACTTAAATTTTTACATTCATTTGACACTACTTTTCTCTAGTTTTTACTCCTTCTTCTTTTTTTTGAAAAAATACAAAAAATTATACTTTTATGATCATTTTATTCGAATAAATATAAAAGTGTGTCATTGTAACATTACTCTTTTATAATTATATTAATTCTCAAATAAATAAATATAAAAATGTATAATCATCGTTCTTAACTTCTCACTCTAAGTGTACGTTATAACCTAAGAACATTTCTTTTCTATATATACCTCCCTCTTCTATTCCATGCTTCTCACTTCTCTTCTTTGTATTCTCGCTGTCACTCTTTCTGTCTCAATCTCTCTCTCTCTTTCATTCTCTCTGTCTCTTTTGTTCCCTCTCTTTCCTTTTAGCTCCCTCTTTCTGTGTCAATATCATTTCCTTGAAGGTGTAGAAATCTTCTTACAGTTTTCTCTAGTGTTTTCATTGTGAAAGCCTCATTACTTGATATTTTCTCACACAGGTTTTCTTTTTTTCTCTTTTCAGCAG

Gene Sequence:

>Vu_22107(-)