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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22078 LG5 44279761 44281968 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/C 44279923 downstream_gene_variant
G/C 44279977 downstream_gene_variant
C/A 44280506 missense_variant p.Gly151Val
G/C 44280962 downstream_gene_variant
G/T 44281372 splice_region_variant&intron_variant
A/T 44281408 downstream_gene_variant
G/T 44281409 downstream_gene_variant
T/C 44281682 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22078.1
VMGSKTKIYIILEFVTGGELFHKILNSGRISEKEARRYFQQLINAVDYCHSRGVYHRDLKLENLLLDAFGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAGEFTCPPWLSFSARKLITRILNPNPVTRITISEIMHDEWFKKEYKLPVFEETKERNTDDIETIFKDCEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDVDQVLNFI*


CDS Sequence:
>Vu_22078.1
GTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGCTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGTTCTTAACTTCATATGA


Promoter Sequence:
>Vu_22078::LG5:44281968-44283968(-)
TCTCTCTCTCTCTCTCTTACAAGTGCTCTTGTTAAATGATTTAAGTGATGCATCAACATGACATGATTCTACAATTATTGTTTTTTAAGATTTGATTACTTTATCACAAATGCAGTCTCCGAAATTTATATTTTGTTAAAGTGATGTTGTGGTAAATTGCCTATTCCGGTTTAATTCTGGTTTTGAGACTAGTTTTACCTGAAAGGCTTGGTTGCTGTGATATCTCATGGCTTCTTTACAGTTGGAAACATGGTTCTCTTTGATCTCCTTCTGGTGCATTTCTGCATTAACTACTTCTTAAAAAATGGTATTTATGGGGTTTGTTTTTGCAATTGATCGTGCACCATTCTAAAGTGGGGAAAGATAAAATCTTGAGGTTGTTTTGAAAAATAAAATAAAATTGAGGAGTCAGTGGCTAAGTTGCATTGCATATAAGACTTCAGCTTTAGTGTTTTTGAAACCATAGGGACTAATGGGATTTTCTAACCTCTCATCAAAGATCTAACCTCTCATCAAAGAAGAAGACGGTTTTTAACCATTGGGTAAAAACTCAACTGTTGTTAAAGTTTGCTTAGGATCTGATTGTGATGTGCTTTCCAGGTGGATACTTCATATCTTGGAAGACATTCTAATAAAGTTGAACCATCATAGAGGATGAATGGGCAGAAAATTAAGCGCCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGCCTGTGGCTCTTAAGATTATTGATAAGGAGAAGGTTCTCAAGTATATGCAAGCTGAGCAGGTACTTCAAGAAATTTTCTTTGACATCACACTCTTGTTCTACCTTCCCATGTACTATTAAGGCATACATTTTTATGTCTAATTGGTTCAAGACACTGATTAAGCATGGCTTTGTTTTTCAACTTAGTTTTAGAAGGTATTAGGTTTCAGATTTCAAATACATATTTTGTTGTGAAGTTGCTATAGGGCCTCACTTGGGGAAGTAAAATCTCGATGTTTTCTCGATGTATTTTCACAGATCCAGCGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTATATGAGGTCTCTCTCTCTCTCTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTACACCCACAACCGACATCTTGCCTCTCACTTTTTGACATATATTCTTCTCTTTTTATTAGAACAGATAAACTTTGACTCAAATGTTGCTTATGGAAAGAGTGATCACTCTGTTATGAACTCAATTTACTGGCCTATGTTTTGATATCTTTACTGTATCTTTCATGGCATTTAATCGTTTCTAAAAGTTTTCCTTGCCTGAATTTGTCCTATTTTTAAAACCACTGTTTGGGCATAGAACTTAAAAACAGTCTGTTTGACAAAGAATTTAGCTTACCGTTCAAGAAATTTGTCAAAGTGTCATGAAACAATATTTGAAGCCAAAGGATTATAAAAGTTTTCTAAATGTTGAAAATAACCTCCTTCTTTTGAGGTTCTAAACATGTTTATTCACCCCATCTAACAAAAGGAAATCTCATATCAATTTTGCTGTCTTGTTTTGATATTTCTTCACCCTGCTGGTGAACTTTCTACCCCATAAACATGATTATCTTTCTGATCAATTAAGCACTTAATTTGATGTCAATCATCCTTGCCGCTGCTGGTTTGAAGACCTTCAAAACTGATTTGCTCACATTCCATTGGAGCTAATACTCAAGACTCATAACAAAAATACCTTATCAAACTAATTGACCTCTCTCATAATTTGCTTTCTAGCTGATATTCAAAGAACAAAGATTAGAATTCTTATGCACGAAAGAAATTACCAAATTAATTATCAAACAAATCCTTATGCAATAAATTCATTTCTTAAAGTGCATCATGCAAGATTTCATATCTCATTTGCAG


Gene Sequence:
>Vu_22078(-)
GTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAACTTTTTCATAAAATTGTGAGTAAATAAATTTTTCTTAGATCCTATTTGGTTATAATTTTCTTTCATTTACGATTGATTCTAGAAATTGATTAGGAAAATATAAAGTGGATACATATTGGATTACATTTTGGGTTCTCCGTCTCCATTTGACTTATAATTCTATAGTTGTGGTCTACCTCGTGCTTGTTCATTCCTTCCATTCCCAGTGCTATCATAGTTGAGATGTAAAAGGGTGTTGTGTGTCTTAGTCCGTAAGTTGCAATTTTGTTGAAGCGGAAAAACTGTTTGTTAAAAGTTTTAATTGTATTTTTTTTCTTGTGAAGTTAAACAGTGGACGGATAAGTGAAAAGGAAGCACGTAGATATTTCCAGCAGCTTATCAATGCGGTTGACTATTGCCATAGCAGGGGTGTCTATCACAGAGACCTGAAAGTAAGCCTATTAGCAATATGCTGATTCTTCAATTTATTTTCTTTTGATTAAAGAAAGTAAAAAAAAAAATACTTACTTTAATTTCATTGTTATTCATATAACTTTGTTCTGCAGCTAGAGAACTTACTATTAGATGCTTTTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGTAAGAATGATTTGTTGCCTTCTCAATTAAATTTGGGTAAAACATCATTTTGCAATTTAATATTTGCACCATTGGTTAACTTAGTCCTCTATATAAGGAAAAATGTTAAATTTAGCCTGACTTTGGCAATTGTAAGTTAATTTGAAGCCCGACTATGGCACGCATTAGTAGCACAGCACAAGGACTAGACTTGCTTTTTCAGTATGTTTGGGGAAGAAAACTAAAATATAATTGACATACAAAATCAAACAAGTTTCAGTTATATTAGTAGGGAACTTAGTCTTGAAATTTTGAATCTCTCAAAAGACAAGCACGTTAGTTTTCTACTTTTCGGCAACCAAAGTTGTAAAAGATCCTGGCCAAGTCACTGTTCTTTCTATCTCATAATATCCAAATGTTCTGAATTTGAATATGAATGACAAATTGGCAGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAACTATGTTGCTCCTGAGGTGCAGACAAATTATATGCTAAATACAAAATTTCTACATTTAAAATAATTCCTGTAATCATATATTCTTGTTTAGTAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGCTACTTGCCTTTTGATGACACCAATCTTTTGAACCTATATAAAAAGGTAAGCACTTTTTTAGTTTTGCATAACTTAATATTGTCCTGAATATTTTTGTGTTTATTATTTTCATTTCTTGGTTTGCAGATTTCAGCTGGTGAATTTACATGCCCCCCCTGGCTTTCATTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCCGTGACTGTAAGATGCAAATGAACCCTTTTAGTCAAATGACATAGCTCTGGAGAGTTTGAAAAATTTGAACTCATTACAACTGAAATTTCATTCTTATTCCTAAAGTAAAAGAGCCATTTCACCTGTAACATTTGTAATTTTTGAAACTGAGTTAGCTATGTCATTTGACCGATTCACTATTTTTAACGTATTTGGAATCTCCTTATGTTTTTTTTTTTGTTAAATAAATCACAAATATTTAAAAGAAGATGATAATTATAATCAAATTAGTTTCATTGTTTCATTCGTTTTTCTGATTTTATATAACTTTATGGCAGCGTATCACTATATCGGAGATTATGCATGATGAATGGTTTAAAAAAGAATACAAACTTCCAGTTTTCGAGGAGACAAAGGAGAGAAACACTGATGACATTGAGACCATATTTAAAGACTGTGAAGTATGTTGAAGATGACCTGTATGATTTTGGTATTGGTTTTCCCTATTCGTTGTAGTATTGCACACATCACTAGTTTCATATTAAGGATTTTCTCCAAAAAATGCAGGTACACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACGTAGACCAGGTTCTTAACTTCATATGA

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This project is funded by the Department of Biotechnology
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