Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_22011 LG5 41814177 41815033 PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A,G 41814264 stop_lost p.Ter163Leuext*?
T/C,* 41814348 missense_variant p.Asp135Gly
C/A 41814349 missense_variant p.Asp135Tyr
T/C 41814353 synonymous_variant p.Leu133Leu
C/T 41814363 missense_variant p.Gly130Asp
G/A 41814395 synonymous_variant p.Phe119Phe
G/A 41814404 synonymous_variant p.Pro116Pro
C/G 41814422 missense_variant p.Leu110Phe
C/A 41814428 missense_variant p.Gln108His
T/A 41814463 missense_variant p.Ile97Phe
T/G 41814469 missense_variant p.Thr95Pro
G/C 41814488 missense_variant p.Phe88Leu
T/C 41814506 synonymous_variant p.Arg82Arg
G/A 41814563 synonymous_variant p.Leu63Leu
A/G 41814576 missense_variant p.Val59Ala
G/A 41814638 intron_variant
T/A 41814675 intron_variant
C/T 41814676 intron_variant
T/C 41814682 intron_variant
G/A 41814684 intron_variant
C/T 41814703 splice_region_variant&intron_variant
G/A 41814781 intron_variant
G/T 41814803 intron_variant
C/T 41814850 intron_variant
T/A 41814857 intron_variant
C/T 41814868 intron_variant
C/T 41814871 intron_variant
C/T 41814884 intron_variant
T/C 41814984 missense_variant p.Tyr17Cys
C/T 41814998 synonymous_variant p.Arg12Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_22011.1
MHYSRIIQPWRRRLLVYGLVLWNPGRGFLTLFLIWECGLLSLPCRLGLSNFGNPYVSPCRGVSLTVPSGNQPGSIDKTSYNSKTEQAILKKSGSDFNYIKIASITYASAIVSVLIALIVLFFYTRKWKPRFRVIGSTIKEVAVFTDIGVTLTFESVVQATGNLNVGNCIGSGGFGATYKAEIALGILVAVK*


CDS Sequence:
>Vu_22011.1
ATGCATTATTCGCGGATCATCCAACCTTGGAGAAGGAGACTTTTGGTTTATGGCTTAGTATTGTGGAATCCTGGTCGAGGGTTCCTGACCTTGTTTCTGATTTGGGAATGTGGGTTGTTGTCTCTTCCTTGCAGGTTAGGACTTTCAAATTTTGGGAATCCATACGTAAGTCCCTGTCGCGGAGTGTCTCTGACTGTGCCATCAGGGAATCAACCAGGGTCGATTGATAAAACCTCTTATAATTCGAAAACAGAGCAAGCTATTCTCAAGAAGAGTGGGAGTGACTTCAATTATATCAAAATAGCATCTATAACTTATGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTTCAGGGTTATTGGATCTACAATAAAAGAAGTTGCAGTGTTTACTGATATTGGGGTCACATTGACATTTGAAAGTGTTGTCCAAGCCACGGGAAATTTAAATGTTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCGGAGATAGCATTAGGAATCCTGGTGGCAGTCAAATGA


Promoter Sequence:
>Vu_22011::LG5:41815033-41817033(-)
ACATATATAACATTGATTATACTTCAAAGGACCATAAACAATCCCAACAAGTCATCAAAAAATTACATGAAACCATCCCATATACATTAATACACAAGAAGAACCCAAGAAGAACCACTAAACAACACAAAACTTATTTAAATTCAAACTTAAGCAAGGAAAACAACTTTGAAACGCTCACCAATAGCTTCGGAAGGGTCCAAACCCCCAAAACGACTTAAAGAACGTCCAAAACAAACACCGAAAACCCCAAAAACCATCCAAAACTCTTACAGTGTCGCCTAGTAACACCCGAGCGCCCAGGAATAGCGCCCAGTGCTAGAACACTAGCGCCCAGAGCGTAATTTTCGCATTTTCAGCCCTCAACGCCTAATTTGGACACTTAGTGCTATCAGTAAAATACTCTACTTCTAATTTTTACCTAGACACTTTTCCCCTACCTTTTAATGACTTAGAGTCTTTTGAACCTATAGTAACATTTAAAAATATCTTCCCAACTCAGATTTGCTATCTCATGTCTATTTGACCACTTTAAACCATTCAAACTCTATTCAATACTTTTCCTTACATATTTTCTGCAACTATCAACTTAAACAAGTCTAAAAAGACTTAACAATAGTCCCTAAACCATCACATATAGCCCAGACCTTCAAATTCAAAATTTCACTACTAAAAACCCCTAAAATGATGTATAACTCATACTAAAACACACTCAATTGGTAACCAACCAGTTCTACCTCAGAACTTTGTTGTCCTAGAACTCAAAACAATCCTAAATAACTCTTAGACCAATCCCAAAGTATAGTTTATCCAAAATAACCCATATCTAAACCCCCCCCCCCTTTTTAGCCCCAAAACCACCTATTCTTTCTGCTGAATGAAAAACAATATTGTATAACATTTTGGCAACTTCTAAAACACCCAATTTATCATCTCAAATTCATCATACACAGCCTTACATCAAAATCATGTGTCACCTCATTTTTCATCCAATTTTCACATCATCAAGCAAAATACAACAAACAACTCAACATGCTAGATTTTGCAATTCCATACAATTTTACAATTCAATAAATTTTACCCCATACCAACATTAATTATAACTTGTCTATTTAACAAAATCAATTAAAAACTAGCTCCCCTTACCTTTTTGGCATTTAACAGTTTCTACCCATTCAAAAGCTCCTCCTAAAGTGCCAAAACCTCTATTGGCTCCTACAGTTTACAATAATTTGATCAGAGTCTACCCTTACCATCATTGATCCACAAAGAGCCTTAGAAAAGACCCAAACCCCTAAAGATGAAAGAAACCCCTCACATTACTCTTTAGCTGAAATCAATCGGACAAGAAGAAAGATCTCGCCTCAACGATTCCTCAGGCGGCTTTGAATATTCAAACAAATGAGAGAATGGTGAGAATTTCTAAAGAGATTGCAGAGAAAGTTTAAGGGGAAGAGTTCTTGAGAGATAAAACTTTTAGATAATGAAACTCCTTATTCTAAAATTCTATTTATACTTTGGATAATTTTTAAAATAAAATAAGGAAGTATCATTATTTAAAGGTTTAATAGCCAATTTTGTCCCTAGTTTTTTTTACAAATGTCAATTTAGTCCCTCATTTTAAATGTGTTTGAAATTGATCCTCATTTTTAAAATTTTGAGTCAAATTAGTCATTTCCTTTAAATAGAAACAAATGACGTTAATGGATTGATGACGTGGCAAAAGATAGGGCTTACGTGTCATTGTTGGGTTGAGGCAATAGGATGCTTCGTTCCCTTTCTCTTTGTCTTGTGTGAGAGGTTGGCTAGGGAAACAACTCTCTTCTTCCCCTTTCCCAGTAGTTCTGGTTTGGCCTTGCAAAGAGGAGATGCACCAGTTTGTTTTCCTTATTGTTGGTTCCTCTCAACAAACCATATTCACAGGTTCTTTTTCCAATTTCTTCTCTCTGCCATTTATCTCGAGCAAGCAAACCCTAATCAGTTTCGTTTCTCATGTCTTT


Gene Sequence:
>Vu_22011(-)
ATGCATTATTCGCGGATCATCCAACCTTGGAGAAGGAGACTTTTGGTTTATGGCTTAGTATTGTGGAATCCTGGTCGGTGACTCGCGGTGTGACGTTGAGAGAAGAGTTGCGATCCTGGTTGTTTGGGAAGGCGACAACGCGGCGTGGCGAGGGTGTAGCCAGCAGAGGCGCAATGAAGGCACGACGGAGGTTTCTTCTCTCCATTTTGATTCGCAACGCAACGAGGGAGCTTCCTTCCGTTTCTCCTTTTCCGGTTCATCTTGCAGAGGGTTCCTGACCTTGTTTCTGATTTGGGAATGTGGGTTGTTGTCTCTTCCTTGCAGGTTTTGGTCTTGTTTTGTTTTGAGCCAAGGTTTGAAATGGGGATTTCGAATTGGGATTGAATTTAGGATTTCTTAAATTGGGAATTTGGAGGTTAGGACTTTCAAATTTTGGGAATCCATACGTAAGTCCCTGTCGCGGAGTGTCTCTGACTGTGCCATCAGGGAATCAACCAGGGTCGATTGATAAAACCTCTTATAATTCGAAAACAGAGCAAGCTATTCTCAAGAAGAGTGGGAGTGACTTCAATTATATCAAAATAGCATCTATAACTTATGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTTCAGGGTTATTGGATCTACAATAAAAGAAGTTGCAGTGTTTACTGATATTGGGGTCACATTGACATTTGAAAGTGTTGTCCAAGCCACGGGAAATTTAAATGTTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCGGAGATAGCATTAGGAATCCTGGTGGCAGTCAAATGA