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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21888 LG5 37828695 37832700 PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3
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Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/T 37828795 intron_variant
A/G 37829013 intron_variant
T/A 37829559 missense_variant p.Gln497Leu
A/T 37829698 missense_variant p.Trp451Arg
T/C 37829788 missense_variant p.Ser421Gly
T/C 37829796 missense_variant p.Lys418Arg
T/C 37829859 missense_variant p.Tyr397Cys
A/T 37829860 missense_variant p.Tyr397Asn
G/T 37829861 missense_variant p.Ser396Arg
A/G 37830022 stop_lost p.Ter343Glnext*?
A/G 37830486 missense_variant p.Val188Ala
C/T 37830556 missense_variant p.Gly165Ser
G/T 37830592 missense_variant p.Leu153Ile
T/C 37830733 missense_variant p.Met106Val
A/T 37830823 stop_lost p.Ter76Lysext*?
G/C 37830827 synonymous_variant p.Leu74Leu
A/C 37830960 missense_variant p.Leu30Arg
G/A 37831049 intron_variant
C/T 37831053 intron_variant
T/C 37831054 intron_variant
A/C 37831056 intron_variant
T/C 37831062 intron_variant
A/T 37831145 intron_variant
A/T 37831218 intron_variant
G/T 37831226 intron_variant
G/A 37831247 intron_variant
T/A 37831449 intron_variant
A/C 37831551 intron_variant
T/A 37831552 intron_variant
G/T,* 37831746 intron_variant
T/A 37831909 intron_variant
G/A 37831959 intron_variant
T/C 37832096 intron_variant
T/G 37832104 intron_variant
G/A 37832135 intron_variant
G/A 37832168 intron_variant
A/G 37832179 intron_variant
T/A 37832220 intron_variant
C/T 37832225 intron_variant
G/A 37832234 intron_variant
A/C 37832241 intron_variant
G/A 37832270 intron_variant
C/T 37832279 intron_variant
G/A 37832283 intron_variant
G/T 37832339 intron_variant
C/A 37832341 intron_variant
C/T 37832357 intron_variant
A/G 37832370 intron_variant
C/T 37832488 intron_variant
G/A 37832650 splice_region_variant&intron_variant
A/T 37832675 missense_variant p.Ile9Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21888.1
MVLLTVGIINASFISRRVGDSLIAGNETSTWLSPSGDFAFGFYQLPNELFLLAIWYNKIQNRTIIWYANGDNLAPIGSKLELNDSRGLVLKNPEGLELWRSNFTSNAVFTGQMNDDGNFQLLDQNFVSLWESFTHPTDTLVPTQVMELGGELSSRQGQLNFSTGRFKLYLQHDGNLVLKLINLLSNYSNAVYFNTGTADLNNETNVGKRFVFDKSGFLYVMKKSGEKFNVSTSNDTISSNDVYYKATLNFDGVLTVSYYPKDPNKEQKWVTLKTIPENICLDSTFTDGGGVCGFNSICNLKDDQRPMCNCPEKYSLIDSNNMYGGCIPNFQVICQGGGQMGSLDDYMMKELQNTDWPKSDYETVSPCTLEQCTKSCSQDCLCVLVTFSGNSCWKKKLPLTNGRRGKEVNATSIMKLMKNDELLTPLPNKKMKEDHDTLIIVISVLLGFSVLVILMLVGTMYFGFSYNRKKIKSGGTNDGVVGKNLRNFTFKELVEATRNFSEELGRGSFSIVYKGRIDMTSVAVKKLDKLFQDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEGQHRILVSAS*


CDS Sequence:
>Vu_21888.1
ATGGTTCTTCTCACTGTTGGTATCATTAACGCTTCATTTATCAGTCGAAGGGTTGGTGACTCACTCATTGCTGGTAATGAGACATCTACTTGGCTTTCTCCTTCAGGTGATTTTGCATTTGGCTTCTACCAACTTCCTAATGAGCTTTTCTTACTGGCTATATGGTATAACAAGATACAAAATAGGACCATCATTTGGTATGCAAATGGAGACAACCTTGCTCCAATAGGATCAAAGTTAGAACTCAACGACTCTCGGGGACTAGTACTAAAAAATCCGGAAGGTTTAGAGTTATGGAGATCAAATTTTACCTCAAATGCAGTTTTTACTGGTCAAATGAATGATGATGGAAATTTCCAACTATTAGATCAAAATTTTGTGTCATTATGGGAGAGTTTCACTCATCCAACTGACACATTGGTTCCAACTCAAGTAATGGAGTTAGGTGGAGAACTCTCTTCTCGACAAGGACAGCTCAACTTCTCAACTGGAAGGTTCAAACTTTATCTACAACACGATGGGAATCTTGTGCTTAAGCTTATAAATTTGCTTAGCAACTATAGTAATGCTGTTTACTTTAATACTGGCACTGCTGATTTAAACAACGAAACAAATGTTGGCAAGAGATTTGTATTTGATAAATCAGGCTTCTTGTATGTAATGAAGAAAAGTGGGGAAAAGTTTAATGTCAGCACATCAAACGATACCATCTCTTCTAATGATGTCTACTACAAAGCAACACTCAATTTTGATGGAGTTTTGACTGTATCATATTATCCCAAAGATCCAAACAAAGAACAAAAGTGGGTCACTTTAAAGACAATACCAGAAAATATTTGTCTAGATTCTACTTTCACAGATGGTGGAGGAGTTTGTGGATTTAATAGCATATGCAACCTGAAAGATGACCAGAGACCCATGTGTAACTGCCCAGAGAAATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAAATTTCCAAGTAATTTGTCAAGGAGGTGGTCAGATGGGTTCACTAGATGATTACATGATGAAAGAGTTGCAAAACACTGACTGGCCAAAATCGGATTATGAAACAGTAAGTCCTTGTACTCTAGAACAGTGTACAAAATCTTGTTCGCAAGATTGCTTATGTGTGCTGGTTACTTTCAGTGGAAATTCTTGCTGGAAGAAGAAGCTACCACTCACAAATGGGAGAAGAGGTAAAGAAGTAAATGCAACTTCTATCATGAAATTGATGAAAAATGATGAGCTCTTGACTCCTTTACCAAACAAAAAGATGAAAGAAGATCATGATACCTTGATCATCGTGATATCAGTTCTTTTGGGCTTCTCTGTGTTGGTCATTTTAATGTTGGTTGGTACAATGTATTTTGGTTTCTCCTACAACCGGAAGAAGATCAAAAGTGGTGGAACCAACGATGGTGTTGTTGGGAAAAACTTGCGTAACTTCACCTTCAAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGAAGAACTGGGAAGGGGATCTTTCAGCATTGTGTACAAAGGAAGAATAGACATGACAAGTGTGGCTGTTAAGAAATTAGACAAATTGTTTCAAGACAATGATAAGGAATTTCAAACTGAAGTGAATGTAATAGGTCAAACTCATCATAGGAATCTGGTTCGTCTACTTGGATATTGCAATGAAGGACAACACAGAATTTTGGTTTCTGCCAGTTAA


Promoter Sequence:
>Vu_21888::LG5:37832700-37834700(-)
ATTACTACAAAACAAACTTAATTTCAGTCTTCTACAAGATCTACATAAGTTTTAATAATTCCATAAATGATATCATCCTATGTGTATAAAATGAGGACCATGATCGTGCCTTTGGGTAACAATGGTTTGAGGAAATGATGTCCACCATGGGTAATGGACAACCATCTTGTAATTGAACCTGAAAACTTAATATTAGTAAATGAATCATAATGGGTAATGGTAATGGTATAATAGAAATGGAAGTTTACTTGTACGAAATGAAATCCATTATTGCTCTAAACTTATTGTCAATCTAACATTCACATGATGTAAATCAAACTGGATCCCATACATACTCAAACATACTATAAGCCATAATATGACAATAAACGAACAATGAGACATGATTCAGATTGCAATGTGCAAATAAAGATCAGAAGCAAGCATAAGCCATAATATCACAATAAACAAACAACAAAAATGAGAGATGATTCAGAATGCAATGTGCTAATAAATATCAAATGATCATAAGTAAGCATATGAAATTGTAGGCTCGGTCAAAAAAAAAAGTCTACATAGTGAAACCACACTTGGAAGTGCGGCACCCCTAAATTGAAGTTCGAAGTGCGGTTGGGGTAAGCCGAAATTCGAATTTCGGCGTGGTGTAATCGGTTTTCGAACTGCGCCATCGTTAAACGCATCTCCAACGGCGGTTAACGTGTTTACTTCAAATAATATACTAACCTCGTGAGCTCTCGCTGCCTTCTTCCTCCTCCACTGTCTACAGCACCACCAACACTCTTCCTCCTCTAGTGTCCATAGCACCACCAGCACAAGCACAACCACTACTGTATAACTTTACAACTCTGAACTTAGAAAACAATATAACAGTACAAGTGAAGAAGTGAAGAAATGAAGAAGTGAAGAAGTGAAGGATGAAAGTGAAAAAATAAGCAGAGGAAAGTGGGTGCATGTAGGGCAACAAATGATATTTAGGATTTATACCATTTAGGGTTGTTGGTGGTGGTTAACTCATCATTAACTCATCATTAATTTTCATTTGACTTTAATAAATGAAGGACAAATGTGTAAAATGAAAGGTGTAGAGAGAAACAGGTGAGGTGCAGGGAGTATTACTAACTAAGAAGGAAGTTCATGTTAGTTTAAATATAAAAAATAAAGGTAAGAGAAGTCTTTTATGGAGTTTATTCTTTTTATAAGAAAATTTTTCTATTATATGTAGTTTACTATTTTTATTATAATTGTTTTATATTATCATTTAAATTAGAGAGATATACTTGAGAATCTTATAAGAAGAAAAGTATTTTCAGATAATTGATATGAGTATTATAAAATTGGTAGAAAATATAAGGAAAGATTTATTACCAATGTTGTGATTATGGTTATAAATTAGAAGAAAAAAATATTGTTATTGTTTTTATCGAGAAAAGGTACTTTGAGAACACATGATAGTTGAAACATTGATATGAAGTATACGTAGGATGATACTGTATGGGTGTAATTAAGTAAATATGATTATGTTATGAAAAACTAAAATCAAATTATAATTATTAAAACTAAAGAAAATAAGAGTCATAAGTTATCTAAATCTCTATCTATAAACACACTTATCATTTCAGTTTCTTTTCTTTGTTTTCATCAGAAGATAAAATGCAAAATGAACTAAAAATACTTTGAAAGACTAAGAATATCAAAACTGCTGTTGATTATAAGATTTGCTTGTATAAGTTTCATAAATACAACAGTGTCTGGCATGTGCTACTAGACCAAAAAGGACGTTCAGGAGCACAAAGTCTCTATTCCAGAGATGCAAGGCTACAATCAACTTTATGATATCCAAGGTCAACAAGCGTCTCTTTCCAGAGATGCAAAGCCATGACGTACACGTTATGAATTCAAAGAAAGCTACACTCTTTACATAACTGGCCCTTAATTTTCGCTTCATCATCATAATCTCCATTTTTTTTTTCCTTTTTCATTCTCAACATGGTTCAGTCAAC


Gene Sequence:
>Vu_21888(-)
ATGGTTCTTCTCACTGTTGGTATCATTAACGCTTCATTTATCAGGTTCGACCTAAGTTTTCTAAAAATTACAGTTAATTTTAATGTCAGCATAACCTTGAAATCTTGAAGGTGTCATCCAATTCTGATAACATTACCTAATTAACAGGGATCAATTCCGCTAAACTGACTTTGATCAACCAATGCAACTACACGGTGTGGCCAGCTCTGACTGGTAACGTCAGTCTTTCAACCACGGGGTTCGTTTTGCCAAGCGGCGAAAATTCCAGTGTCAATGTACCCGTGAATTGGCTGGGTCGAATCTGGGGCCGTACACTCTGCACCACCGACTTAATAACCGGAAAGTTCTCTTGTGCTACCGGCGACTGCAGTTCTGGCAAGATAGCATGTAATGGAAGTGGAGGCTCTCCACCGAACACGCTGGTGGAGTTCAGTTTAGACGGCTTCAACGATATTGACTTTTATGACGTGAGCTTGGTGGACGGGTTCAACCTGCCCCTGATTGTTGTTCCCATAAGTGGTTCCGGCAGCAACTGTAAGAGCACGGGGTGCGTGGTGGATTTGAACGCAGTGTGTCCGGCGGAGCTAAAGGCAACCAGAAATGAAGAAGTGGTGGCATGTCAGAACCCTTGCAGTGCGTTCCAAGAGGACTATTTTTGTTGCGTCGGGAACCGTTCCTCGTGCGAACCAAGTGTGTACTCCAAAATATTCAAGACGGCATGTCCGCAAGCCTACAGCTACCCACAGGACGACCAAACCAGCACCTTCACCTGTCCCAATCCTGTAGACTACAACATTGTCTTCTGTCCTACATCTACCAATGCCAGGTTAGATTACTGGCTAACTAACTAATCAATTATACAATAAACCTAATAAATAATAAATAATAAATATGCTACAATAATTCTCAGTAATATAAACTCTAATAAATGTCTTTGATCCCTCCCTCCCCTCCCCCATACTAGGACTTTCCACTGGAATTCTGCTATCATGTAATTCCTTGCAAACCATTATATGTATCAGGATTCCCAACCATATACAAACTATTTGTAATTAGTTCAATGTCTTGTTCACTATCTACACCAAAAATATGTGATCTTGTGCCACAAATATACCATTTAGCTTTCCTCATACTCTACATTTTTTGTTATTGATCTTTATTCCATTTTTTCCCGCAAAACCAACAAAGACGCTTGGCAATTCTTTCACTCACTTATTTACGAGTTAAAGGAGATTGTTGATCTAAAGTAGTAATAGGATAATTCCTGTTGGTCGAGAAAGATGACCCGAATATGTCATTTTGTTCATTGTAATCAGAAATAAAAAATTTCCATGATAAACTTTTTTAGCCATAGTTGTAACATTTCATCTTGAAGTCTTGACCGTCTTAGGACTATGAAAACAAACTACTCTTTCTAACTCTCTTGTTAATCCAACGCAAAAAGATAAATTCTCTTTTTGTAAGCCAGAATTACCAAACAACTGCAGAATACAAACTAACCGAATATAAATTCTGTTTAAAACTTATTACACAAACCTTACTTTCCAAAGCTTTATTCAACAAAACAAAAAAACAAAATTATAATTTTATTTTTTTTACAAATATGTTTGTACATTAGCAATTAGCATTGATTTGCACACTTGTTTAGTTTCTCAAAGATCCTTACTAATGTTTCTTGCTTGTAATAAACTGCAGTCGAAGGGTTGGTGACTCACTCATTGCTGGTAATGAGACATCTACTTGGCTTTCTCCTTCAGGTGATTTTGCATTTGGCTTCTACCAACTTCCTAATGAGCTTTTCTTACTGGCTATATGGTATAACAAGATACAAAATAGGACCATCATTTGGTATGCAAATGGAGACAACCTTGCTCCAATAGGATCAAAGTTAGAACTCAACGACTCTCGGGGACTAGTACTAAAAAATCCGGAAGGTTTAGAGTTATGGAGATCAAATTTTACCTCAAATGCAGTTTTTACTGGTCAAATGAATGATGATGGAAATTTCCAACTATTAGATCAAAATTTTGTGTCATTATGGGAGAGTTTCACTCATCCAACTGACACATTGGTTCCAACTCAAGTAATGGAGTTAGGTGGAGAACTCTCTTCTCGACAAGGACAGCTCAACTTCTCAACTGGAAGGTTCAAACTTTATCTACAACACGATGGGAATCTTGTGCTTAAGCTTATAAATTTGCTTAGCAACTATAGTAATGCTGTTTACTTTAATACTGGCACTGCTGATTTAAACAACGAAACAAATGTTGGCAAGAGATTTGTATTTGATAAATCAGGCTTCTTGTATGTAATGAAGAAAAGTGGGGAAAAGTTTAATGTCAGCACATCAAACGATACCATCTCTTCTAATGATGTCTACTACAAAGCAACACTCAATTTTGATGGAGTTTTGACTGTATCATATTATCCCAAAGATCCAAACAAAGAACAAAAGTGGGTCACTTTAAAGACAATACCAGAAAATATTTGTCTAGATTCTACTTTCACAGATGGTGGAGGAGTTTGTGGATTTAATAGCATATGCAACCTGAAAGATGACCAGAGACCCATGTGTAACTGCCCAGAGAAATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGCATACCAAATTTCCAAGTAATTTGTCAAGGAGGTGGTCAGATGGGTTCACTAGATGATTACATGATGAAAGAGTTGCAAAACACTGACTGGCCAAAATCGGATTATGAAACAGTAAGTCCTTGTACTCTAGAACAGTGTACAAAATCTTGTTCGCAAGATTGCTTATGTGTGCTGGTTACTTTCAGTGGAAATTCTTGCTGGAAGAAGAAGCTACCACTCACAAATGGGAGAAGAGGTAAAGAAGTAAATGCAACTTCTATCATGAAATTGATGAAAAATGATGAGCTCTTGACTCCTTTACCAAACAAAAAGATGAAAGAAGATCATGATACCTTGATCATCGTGATATCAGTTCTTTTGGGCTTCTCTGTGTTGGTCATTTTAATGTTGGTTGGTACAATGTATTTTGGTTTCTCCTACAACCGGAAGAAGATCAAAAGTGGTGGAACCAACGATGGTGTTGTTGGGAAAAACTTGCGTAACTTCACCTTCAAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGAAGAACTGGGAAGGGGATCTTTCAGCATTGTGTACAAAGGAAGAATAGACATGACAAGTGTGGCTGTTAAGAAATTAGACAAATTGTTTCAAGACAATGATAAGGAATTTCAAACTGAAGTGAATGTAATAGGTCAAACTCATCATAGGAATCTGGTTCGTCTACTTGGATATTGCAATGAAGGACAACACAGAATTTTGGTGTACGAGTTTATGAGCAATGGCACTTTAGCAAGCTTCCTTTTCACCCCTTTGAAAGCAAATTGGAGACAACGATTTGACATTGCCTCTGGGATTGCAAGAGGTCTTGTTTACTTGCATGAGGAATGTTGTACCCAAATCATCCACTGTGACATAAAGCCACAGAATATACTTCTAGATGATCAATGTAATGCCAGAATTTCAGATTTTGGATTAGCAAAGTTGTTACTGATCAATCAAAGCCACACTGAAACTGGAATCAGAGGAACCAAAGGGTATGTTGCACCAGATTGGTTTAGAAGTTCACCAATCACTACTAAGGTTGACACTTATAGTTTCGGAGTGTTGTTATTAGAGATAATTTGTTGCAGGAGGAATGTGGAAAAGGAGCTTGCTGATGAAGAAAAAGGGATATTGACAGATTGGGCATATGATTGCTACAAGAGTAGAAGACTAGACATTCTTCTAGAAAATGATGATGAAGCTATTAATAACATTAATAGTTTTGAAAAATTTGTCATGGTTGCTCTTTGGTGTATTCATGAAGATCCCTCTCTTAGGCCAACAATGAAGAACGTTTTGCTGATGCTGGAAGGAATTATTGAAGTTTCAAAACCCCCAAATCCCTACCTTTACAGTTCTGCCAGTTAA

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