Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21775 LG5 36132206 36134885 MADS-box transcription factor 1 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 36132269 missense_variant p.Ser297Pro
C/G 36132302 missense_variant p.Gly286Arg
T/A 36132419 missense_variant p.Asn247Tyr
C/T 36132489 synonymous_variant p.Ala223Ala
G/T 36132523 missense_variant p.Ala212Asp
G/A 36132529 missense_variant p.Thr210Met
T/G 36132647 missense_variant p.Asn171His
C/G 36132683 missense_variant p.Ala159Pro
G/A 36132700 missense_variant p.Ser153Leu
G/A 36132720 synonymous_variant p.Thr146Thr
T/C 36132723 synonymous_variant p.Pro145Pro
C/T 36132759 synonymous_variant p.Pro133Pro
T/A 36132891 downstream_gene_variant
C/T 36132963 downstream_gene_variant
A/G 36132965 downstream_gene_variant
G/A 36132973 downstream_gene_variant
C/G 36132985 downstream_gene_variant
G/T 36133009 downstream_gene_variant
A/G 36133191 downstream_gene_variant
A/G 36133198 downstream_gene_variant
T/C 36133237 downstream_gene_variant
T/A 36133427 downstream_gene_variant
G/A 36133453 downstream_gene_variant
T/A 36133454 downstream_gene_variant
G/A,* 36133542 downstream_gene_variant
A/G,* 36133544 downstream_gene_variant
A/G 36133570 downstream_gene_variant
A/G 36133574 downstream_gene_variant
T/C 36133796 downstream_gene_variant
A/C 36133937 downstream_gene_variant
T/C 36133999 missense_variant p.His103Arg
T/G 36134016 missense_variant p.Glu97Asp
C/T 36134022 synonymous_variant p.Gly95Gly
T/C 36134028 synonymous_variant p.Glu93Glu
A/G 36134047 missense_variant p.Leu87Pro
C/T 36134071 missense_variant p.Gly79Glu
T/C 36134116 downstream_gene_variant
A/G 36134166 downstream_gene_variant
C/A 36134294 downstream_gene_variant
T/G 36134388 missense_variant p.Asn50Thr
G/T 36134392 missense_variant p.Pro49Thr
T/C 36134487 downstream_gene_variant
C/G 36134539 downstream_gene_variant
C/G 36134541 downstream_gene_variant
C/G 36134553 downstream_gene_variant
C/G 36134555 downstream_gene_variant
T/C,A 36134578 downstream_gene_variant
C/A 36134618 downstream_gene_variant
G/C 36134633 downstream_gene_variant
T/G 36134634 downstream_gene_variant
G/T 36134723 stop_gained p.Cys20*
C/T 36134729 stop_gained p.Trp18*
A/G 36134770 downstream_gene_variant
C/T 36134841 downstream_gene_variant
G/C 36134861 missense_variant p.Pro9Ala
C/A 36134862 missense_variant p.Trp8Cys
C/T 36134863 stop_gained p.Trp8*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21775.1
MLDNAFTWPKKYEIKVIVDLHAAPGSQNGKPHSASRDGYLEWGNCYSTDPIHAGSQLSDSQRKEHLLGEANTALRQRLEGYQINQFQLNPSGEEMGYERHPGQHQGDALFQPLECEPTLARQSLESHAVGVVGDRLLSVEGRQVHHQPPHLNQHRFTVAQRNATSGSQLPLPTHLSLSPGQRALRRVAFPCQPLHAGNRVPRGQQLHLHSRRLLPGFHWLTEPQRGRLLQPRSIGDSHRVDSVLQPRQTRSRNLNGTLPDVFDSLVSLQELRLSYNNLTVSLPKTFAVSGIQNISLQNQKHNVSDIHMVQYFQTQVRA*


CDS Sequence:
>Vu_21775.1
ATGCTAGATAATGCCTTCACATGGCCAAAAAAGTATGAAATTAAGGTAATTGTGGACCTGCATGCTGCTCCAGGCTCACAGAACGGAAAACCTCACAGTGCCTCAAGAGATGGATATCTAGAATGGGGTAACTGCTATTCTACAGACCCAATTCATGCTGGATCTCAGCTTTCTGATAGTCAGCGCAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGTTGGAAGGATATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGAAATGGGGTATGAACGTCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTAGCTCGCCAAAGCCTTGAGTCCCACGCCGTCGGGGTGGTCGGGGACCGGCTTCTGTCAGTGGAAGGGCGTCAGGTGCACCACCAACCGCCTCACCTCAATCAACATCGCTTCACAGTCGCTCAGCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCTCTCTCTCTCCAGGGCAACGCGCTCTCCGGCGCGTTGCCTTCCCTTGCCAACCTCTCCATGCTGGAAATCGTGTTCCTCGGGGGCAACAACTTCACCTCCATTCCCGACGGTTGCTTCCAGGGTTTCACTGGCTTACAGAGCCTCAGCGTGGCAGACTGCTTCAACCTCGCTCCATCGGCGATTCCCACCGGGTTGACTCAGTCCTCCAACCTCGTCAAACTCGATCTCGGAACCTCAATGGTACCTTGCCTGATGTGTTTGACTCCCTTGTGAGTTTGCAGGAGCTCCGTCTCTCTTACAACAACCTCACTGTGAGTTTGCCAAAGACCTTCGCGGTTTCTGGGATTCAGAATATCTCGCTCCAAAATCAGAAACATAATGTATCTGATATTCACATGGTCCAATATTTCCAAACACAAGTTCGGGCATGA


Promoter Sequence:
>Vu_21775::LG5:36134885-36136885(-)
GGTGATTGAGTTCCATGTGATTGGATGTGTTCCCTGCACCAATGAACACATTAGGCCATTGAATATATGGCAAAAATGTGATGGATCTCATCTAGCTTATATGAAAGCACATAAACGACCTTTTTTTTTCAAGAATTCAATGGCCTAACGTGTTCATTGGTGCAATAAACACCGCCCACCATGAAACTCACTCATCCATATGAACTATTGGAATAAAGAACCCAATTGAATGATGAGGGAACTCCCTCTTCCAAGGAAAAAAACATGACAAAGCTTTGGAGAAATGGCGCATAGAAAGCACTTCAATGGCACAGAGAGAGAAACGACTTCCTCCAAAGACAACGGTGGGCCCAAACGACGAACAAACAACGGTGGACAGAGAACCACTTCAATGGCGGAGAGAGAGTTTTGAAGATCTCTCGGCGAAGGAGAAGAGAGAGTTTCGAAAAGGGGCAAAGAGAGAGTTTCGCAGGGTCAGGGTTTCAGAAATTGAAAAGTGTCAAAAGGTTTCTGAAGATTATTCCAAAGACGCCCTCCAAGACAAAATGAATCTTTTAAACAAAATTTAATAGATAGTGCAACACGTGTCGTTATCAAATTATTGTCAAAAATATGTTGTTAAAGAAGCATTTTCCCTTCTTAAATTTTGAATTTGAAGCAGCGAAAAAGGATAACGCGGAAACTTTAACACCACTTTCCAAATCAAGCTTCTTTTCCTGTCTTTACAAGCAAATTGGACCATGGTTAATCATTAATCAATATTCTCTAACACTTCAATATTTAGCAAAACAATTCTAAAATTACCCCAAAACAATCTCAATTCACAAAAATACATCACTATCTCAGCTATCGATAAATAATCACTCATGTTGGTTTTTTCTTATTTTCACATTACAATTTTTAATTTTAAATCACAATTAATAGATCTCAAATTAATTGTTTTTATTTCCAAAAGTATGTTACAATTTTTTAATATATAATTTTCTATTTATTTTTTCTCAAGTATTTAGAGTAGCTGGTAAGTATATGATGAACTTATGAAGAGTTTAAAAAAATTTAAAAAATCTTTAGTTAATTAAACAAAAAGACTATCTGATGAGTTAAATAAATATCATATCTGCTATAGTTTTTGTTTTGGGATGGTTTGAACTTTAATCAAACATATTAAATGTCTTCCGTAGAAATATCTTTTCTTTTCCATTTTTAGTTATCACTTTTTATTATTATAAATTTTTGTTTAAGTCTGTGAATTATCATAAATTTAGAACCAGAGGATTCCCAACTTTTTTATCAGTAAAAAGGAAACATGCACTCTCAAAGAACTTTGACCTAAACATACTTAACACGCAGTAATTAAAAGTTGTCCTTCTATAATAATACTTTTACCGTAATTAATATTAAAGAAAAACAATATACAACGGAGGATTTTCATGTAAACAAATTATATAATAGAACTTATTCATAACTAAAAAAATCAAAGCGGTTTTTAATTATTTTTGTTACTAATTAAAATTTAATTAAATTTCCGAGTCTTTATAAAATAGTAGAAATCATAAAAAGACATATAATTACAGTTTTAATTTGTTTATTAATAAAACGAAGGAAGTTAATTTGAATTGAGAAAAGCGTCGTAGATCTATGGAGGAATAGGGGTAGTTGGGTAAATTTATGATGTAATATACGAACTACCCTACAACTACGAGGTTGAGGATCTTTAAGGTCAGTTCATCTTTGGACACGTGGCAGTGTTGTGATATCGAATAACCATCTTTCTCTTGGTTTCAATGGCCAATCATGATCCAGACAAAGCTATCAAAATCATGCACGTAAACATGAGCTTTAAAGAGAACTTTAGATCAAATTTGAATTTATCAATGATAAAGCTATGCGGGACATGCACATACAGAAAATGGCTTAAATGGTGTCTGAATTCCCGTGGGGTGTTGGATAGCTGAAGACCCAAAACACCACCAAAGCGGTTTGTTGGGGGATCCTTGGAA


Gene Sequence:
>Vu_21775(-)
ATGCTAGATAATGCCTTCACATGGCCAAAGTAAAGACCATTTAAGGGATAGTGCCCTGTCAATTTTTGTTACCATGTAAAATTGAAAAACCACTTTATCTCAATGAATGTCACTCTTCAATGTCATTGCAGAAAGTATGAAATTAAGGTAATTGTGGACCTGCATGCTGCTCCAGGCTCACAGAACGGAAAACCTCACAGTGCCTCAAGAGATGGATATCTAGAATGGGGTGATTCATACATACATGTGATACAGATTTTATATGAGGGGATGTGAGAAAGAGAAGTTGAGAGAGTTAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGCATTTACTTCCTTCTCCATTGAAGTACTTAGGGCATAGTTACCCACGTACCCCCAAACCGATCTATATAGATTCATGAATCATTATGTATGACTTCGTATATCTTCCCTTAATTAGGTAACTGCTATTCTACAGACCCAATTCATGCTGGATCTCAGCTTTCTGATAGTCAGCGCAAGGTATGATAACAATTCTCAATTCCTTTTTCAATGTTTAATTGTCATTCTTCCCAGTGATTCCCTTGCTAATTAACCAGTTCAATTATGTCACATGTGAAGGAACACTTGCTAGGTGAGGCAAACACAGCTCTCAGACAAAGGGTAACAAACATTTCAACACTCAAGTTCATATACAGTGTTCTATGATGTGATTTAACGATAAAATTTGAATGTACAAAGGTGTCCTGAACTAAACAGATGCTTTTTGAGTGACTTATGCTGTTTTTGGCAGTTGGAAGGATATCAAATAAATCAATTTCAACTGAATCCCAGTGGTGAAGAAATGGGGTATGAACGTCATCCAGGTCAACACCAAGGCGATGCTCTCTTTCAACCATTGGAGTGTGAGCCAACATTAGGTATCAATTTCCTCTTCATTAAATTCTGATGCGTGGTTGTTTCTGGTTACTAGCAGACAAAAAGGTTGTTGTTGGGATTTGATGTAGACTAGAAACTACAAATGATGTTATGTTGATGAAATGGTGAAGCTACATATATATACATATTTCTAATAATTTGAATTTGTTTCTTTGGTCAATAATTTGTCTACATAATCTCCTTCTACATTATAATAAGCATAAACTGTTTGATATGACTTTCAATCAGTTATATCTGTTTCAATATGCCTGGTTTGTTTGACAAACCAAGATTTTCTTTCTAGATTATATATTGGCTTCTCATTACAAGATGCACACGAAGGGCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATTTTTGGGATGCATAAGTACTTCTTAGTGTGTCTACATGTTCTTTGTAGTTGTGGAAATAGAATAATTTTCTGAATGTTGGTGTGAACGTGCAGCATGCTGAAAACGCTAGAGAGGTATCAGAAATGTAACTATGGAGCGCCCGAGGCCAATGCGTCAACAAAGGAAGCCTTGGTATTGGTAATTATCCTATACACCCTATTTAATTGAGCAGCTGTGTGTAAAAATATAGAAATATTCTCTGATATCATTTGTAGTATCTGGGAAATATACTTCATTAAGAAATTTTCTGGACAACTTTCCAAAACACACAAAGACAACACTTTAATCTCTCAAACTTACATAACATATAACTCACAAAGTACAACCCATTCTCTCTCTTTGATTCAATAATACATGCAGCAACCCCACTCTTTCTCTGGTTTCTCAAGGTGTTGTATACAGCACACACAAGCTCTCCTATTTTCACTCTTCTTTGCTGCACACACCTTCCTATTTTTTCTCTCACAAAACACCATGACTTTGCTACACACTCCTCTCCTTTTTCTCACAAAACGGTGAGGCTTCTCCCTTTCTTTGCATTCCACCACGGTGCACACACTACAAGTGTGCCACATATCTTACAAGAGAACACATACATATTTATAATAAAAAAACTAAACCTAACATCTCCACTCACTATGTGGGTAATGATAATGCTAACACAATACCTAACTTCTTCTACAAATGGGGACCAGCTCGCCAAAGCCTTGAGTCCCACGCCGTCGGGGTGGTCGGGGACCGGCTTCTGTCAGTGGAAGGGCGTCAGGTGCACCACCAACCGCCTCACCTCAATCAACATCGCTTCACAGTCGCTCAGCGGAACGCTACCTCCGGATCTCAACTCCCTCTCCCAACTCACCTCTCTCTCTCTCCAGGGCAACGCGCTCTCCGGCGCGTTGCCTTCCCTTGCCAACCTCTCCATGCTGGAAATCGTGTTCCTCGGGGGCAACAACTTCACCTCCATTCCCGACGGTTGCTTCCAGGGTTTCACTGGCTTACAGAGCCTCAGCGTGGCAGACTGCTTCAACCTCGCTCCATCGGCGATTCCCACCGGGTTGACTCAGTCCTCCAACCTCGTCAAACTCGATCTCGGAACCTCAATGGTACCTTGCCTGATGTGTTTGACTCCCTTGTGAGTTTGCAGGAGCTCCGTCTCTCTTACAACAACCTCACTGTGAGTTTGCCAAAGACCTTCGCGGTTTCTGGGATTCAGAATATCTCGCTCCAAAATCAGAAACATAATGTATCTGATATTCACATGGTCCAATATTTCCAAACACAAGTTCGGGCATGA