Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21729 LG5 35808983 35813356 PREDICTED: trihelix transcription factor GT-1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, identical protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, sequence-specific DNA binding
SNP Position Effect Amino acid change
C/T 35809155 5_prime_UTR_variant
G/A 35809334 synonymous_variant p.Glu50Glu
A/T 35809366 missense_variant p.Lys61Ile
C/T 35809421 synonymous_variant p.Arg79Arg
G/T 35809565 missense_variant p.Lys127Asn
G/T 35809689 missense_variant p.Val169Phe
T/A 35809773 upstream_gene_variant
C/T 35809797 upstream_gene_variant
G/C 35809991 upstream_gene_variant
C/T 35810102 upstream_gene_variant
G/T 35810175 upstream_gene_variant
A/T 35810264 upstream_gene_variant
A/G 35810339 upstream_gene_variant
G/A 35810356 upstream_gene_variant
C/T 35810444 upstream_gene_variant
A/T,* 35810472 upstream_gene_variant
T/C 35810491 upstream_gene_variant
G/A 35810545 upstream_gene_variant
A/T 35810657 upstream_gene_variant
T/C 35810697 upstream_gene_variant
T/C 35810904 intron_variant
T/C 35810933 intron_variant
A/T 35810975 intron_variant
G/A 35811041 intron_variant
G/C 35811131 intron_variant
T/A 35811270 intron_variant
C/A 35811408 intron_variant
C/T 35811590 intron_variant
T/A 35811957 synonymous_variant p.Thr232Thr
C/T 35811983 intron_variant
T/C 35811992 intron_variant
A/T 35812046 downstream_gene_variant
A/G 35812170 downstream_gene_variant
A/G 35812173 downstream_gene_variant
G/T 35812183 downstream_gene_variant
A/C 35812224 downstream_gene_variant
A/G 35812286 synonymous_variant p.Ser248Ser
T/C 35812403 synonymous_variant p.Asp287Asp
T/A 35812457 synonymous_variant p.Thr305Thr
T/A 35812514 downstream_gene_variant
T/A 35812550 downstream_gene_variant
A/C 35812557 downstream_gene_variant
T/A 35812686 downstream_gene_variant
G/A 35812734 downstream_gene_variant
A/G 35812799 downstream_gene_variant
A/G 35812865 downstream_gene_variant
T/C 35813064 synonymous_variant p.Pro369Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21729.1
MYLSEKPRPIDFYKEEGARDMMIEVVSNGELPPPPPHHPPPMILGESSGEDPEVEIKAPKKRAETWVQDETRSLIGLRREMDALFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGGSGSAKMSYYKEIDEILRERNKNVQYKSPTPPPKVDSFMQFADKGIDDTSISFGPVEATGRPTLNLERSLDHDGHPLAITTADAVAAGGVPPWNWRETSGNGGESQSCCGRVISVKWCDYTRRIGIDGTPEAIKEAIRAAFRLRTKRTFWLEDEDQIIRSIDREMPIGSYTLHLDEGMAIKLCLYDESEHLPVHTEDKVFYTENDYRDFLTRRGWVCLREFDGYRNIDNLDDLRPGAIYRGVS*


CDS Sequence:
>Vu_21729.1
ATGTATTTGTCGGAGAAGCCGCGTCCAATCGATTTCTACAAGGAGGAAGGCGCGCGCGACATGATGATCGAGGTGGTCTCCAACGGTGAACTCCCGCCTCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGTGGAGAGGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCCGAGACGTGGGTACAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTGTGGGAACAGATATCCGCCAAGATGAGAGAGAAGGGTTTTGATCGCTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTCCTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGGGGAGGCAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAACAAGAACGTGCAGTACAAGAGCCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTATTGATGATACTAGCATCTCTTTTGGACCTGTAGAAGCTACTGGAAGACCAACACTTAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCTGGCGGAGTCCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGTGTGATTATACAAGACGAATAGGTATTGACGGCACTCCAGAAGCCATCAAAGAAGCAATCAGAGCTGCTTTTAGGTTGAGAACTAAACGCACATTTTGGTTGGAGGATGAGGACCAGATTATCCGAAGTATTGACCGTGAAATGCCTATTGGAAGTTACACTCTTCACCTTGATGAAGGAATGGCCATTAAATTATGTCTCTATGACGAGTCTGAGCACCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTACCGTGATTTTCTGACCCGGCGGGGTTGGGTATGTCTAAGAGAATTTGACGGATATAGAAATATTGACAATTTGGATGATCTTCGACCTGGTGCTATATATCGTGGTGTGAGTTGA


Promoter Sequence:
>Vu_21729::LG5:35806983-35808983(+)
TGCGATGATCGTATAACTTTTAGTTATATAGCAGTAGATGTTGCAGATGCTCCAGATGCATGATAGAAACGCGAGAGTGAAAAAAAAATTTGTGTTATTTAAAGTTTTTATACTATAAATGTTAGAGACAATGTAATCGGGTTTATTTTATTTCGTTTTTATTTTACAAATTTCAGTATTATATAAGTGAATTTCAGCGATGATATTATGATTTTAAAAATTTTATATTTCACTTGTAATTGGGACATCCAAAAAATCGAAAAATTAGGATGTTACAAAATGATCAAATTGAACAAAATTTAGAACCACTTTGAATGTCGATAAAAGTTGATGACAACTTTAAATAAAATTGATGAAAATAAGGACCAAAATAAGAATTAAGCATTTTTTATCTTTTGGATTGTATATAGAGTTTATTGAATTTTATTCAGATTTTTATTAGAAAAAAATTGTTATTCTTGATTGAATAAAACAAAAATTATAATTAAATGAACTAGGCAGCCAACTTGTTTAACTCTTAACTCACAAATTCTTAACGATAGAATAATATTTAATTTTTTTAAACTTGCTAATAAATGAATTAGATTAAGTTAGTTTAACTCATAAATTCTTAATGATGGAATAATATTTAATTTATTTAAACTCGCTAATAAATGAATCAAATTAGATTAGTTTGCCAAATAAACTGAATAAACTATATTGCATTGGGTTGGATAACCCATCTTAACCACATATGTTATCCAATACAACATTAGAAAATTTCAACCATTAGGAGTAACAATTAAATTAAGAACTTTTCCCTTCAAAAATGGAAAACTAATAATGTTTTTATGCATAATTGTGTTTTGGCCGTATGAAATGATTTTGGATATTGATGAATTAGTGTGATGAATTATTTTATGATCTTGATTAGAATGTTTTCAAATTTGTGATATGCAAGTGAATTTTAATGGTTGAATTATCTAAATATATTATTTTTGAACTAAAAAAAAGTGTAAGAGTTGAAAGAAGTTCTTTCATAAAAAAAAAAGTATGAGATATATTTTTGTTAGAGATGATATAATTATTTATCAAAAAGAAAACTTTATGAGAAAATACAATAGCCATGTAAAGTAGCAAGAATTATAACAAGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGGGTTTGCTAACGCGCGTACGTCTGTTTTTCAGTTGGTACATTTTAGCAATGTGTACCGGATTTTAGTAGACAAAAATATCGTTATATATCATGGATTCTAAGTTTTAAGGTTAAGGGTATTTTAATAATTTTCATTCCTCTCACCTCTCTCATTCCTCTCAAGAAAAGATTGAGAGGAATGAGAGAGGTGAGTAAGGGTTTGAGAGTTTTTTTTTTTTTTTTTTTTAAGTTTTGAGAATGAAAATTATTAAAATACCCTTAACCTTAAAACTTGGAATCCATAATATATAAGGATATTTTTGTCTATTAAAATCCGGTATGCTAAAATGTACCAACTGAAAAACAGGCGCACATTAGCAAACCCCTATATATAAAATCATAATCATATTAAATCTTACTTTGTTAATCATGTGATGATCAAATTTTAAGATGGTGTAATTAATACACGTGACAATTTTGTTTATAATTTTTAAAATGCGATAGTTTTTATTTAAAATTTAAAAGATGAGCAAGTAAATTTAATATTTATATAATTTTTTATCATATTTATTTGGATATACCGATATAAATTTAAAGTAATTTTACTCAGTTGGTTCTGAAAATTTATTGTTTTCAGGAAAAAAAAAACGAAATAACAGTAGTACATAATTAATTAAGATATAATAATAGTTAATAATAATAATGATGATAATAATAATGATAATATTGTCAAGAAGAGACAGACACGTCCGTCTTCCTCATCCCCTTGCTTTCCACCGCATCCAAAAAAGCTTTTACTTCA


Gene Sequence:
>Vu_21729(+)
ACGCTGACACACACAACGCAAAACCCCTAACCTTCTTCACTGTTTCACCACTTCAAAATTTCACCCCAAAACCCAATCCCTAACTTTTACAATTACAATTACCATCGCCATCACTCTCTCTTTCTCAATTTTCCTTCTGCAATAGAATCCCTCAAACCAAAAATTCACACTCCCACACATACAGCAACCAACTTACCGAACCATGTATTTGTCGGAGAAGCCGCGTCCAATCGATTTCTACAAGGAGGAAGGCGCGCGCGACATGATGATCGAGGTGGTCTCCAACGGTGAACTCCCGCCTCCGCCGCCGCACCACCCGCCGCCGATGATCCTCGGCGAGAGCAGTGGAGAGGACCCCGAGGTGGAGATCAAGGCCCCCAAGAAACGGGCCGAGACGTGGGTACAGGACGAGACGCGCTCGCTCATTGGCCTCCGCCGCGAGATGGACGCGCTCTTCAATACCTCCAAGTCCAACAAGCACCTGTGGGAACAGATATCCGCCAAGATGAGAGAGAAGGGTTTTGATCGCTCTCCCACCATGTGCACCGATAAGTGGCGCAACCTCCTGAAGGAGTTCAAGAAGGCCAAGCACCAGGACCGGGGAGGCAGTGGCTCTGCTAAGATGTCGTATTACAAGGAGATTGACGAGATCCTCAGAGAGAGGAACAAGAACGTGCAGTACAAGAGCCCCACTCCTCCGCCAAAGGTTGATTCTTTCATGCAGTTTGCTGATAAAGGTAGTAGTTCACTCGTTGTAATTCGTCACTTCTGTGAACCGTTAGGTTAGATTTGGGAATCCTTCAATTGAATTATGCTATGTTTGATTTTGTTGCACCAGGTTCAGATCACTCTACGAATCTGACTTTTGAGGTGAATTAGTGTGAGAGTTAAACTTGTTCTTACAATGTTGTTTCAGTAATAGTTCTGTTGTCTAAAATTCTAGGGACTAAAAGGAGTAGTTTCTAGTTTTAAGTTCTAAAACGTTCTAAAATGAATTAGAAAGCTCACGAGGAGGGACTAAATTGAATAGTTTCTAGGTGCAAGAACTAAACTGTACTAACCAAGCACTGGTGTTGGGGCTAAAATGAGGCCTGAAATAAGTTAGTCTGAAGATTCTTTCGGAATATTGATCACACAATCTTTGTAAGCAAATTACTTGTGAAGCTGCGTCTCTAAGTCTGGCAGGGAGTGGGGATGTTTGATATCTGATGTGGATACTTTTTTGACGGTTTGTTTAATTGAGATGGTGTAAGTGACATTGGTTAAAGCTGAACATTCTGGAGTTTCCCAAATTTGACAAATTTTGTCTGGAAACCGAGATACTTCATTATCTTTTTCAAGCATTCTTGTTCGGGAATATTAGCTTGTGTGGGGAAAAACGTAACTGGGGAAACCTAAGGTAACTGCTTAATGGATTGCATTTTCAAAAATCCAAAATAATGGCATTTTGGTCTAAAATTGCTGGCACGAGGTGATTGATTTTTATGTTACTTTGTGAAGCATAGATTTGAAGGAGTAAAGAAGCTTTCAGTTTCCCTGTATAAGTTTAGTAAGTGTGATTAGAAATCACGTTTATTTCTTGGTTGAAAAGCCTTACCCTTAAGTCGAATATCTCTGTTTCACATAGGACAGTATAAATCTCGACAATTTGAAAGTGGGGTTTAATTCCTCTCCAGTACTGTTAAACTATCACTTTGGATATCTGTTGAGGTTATAATTTCACCCATCTCATCTTTAGGAACAATAATTTAATTGGTTGTCTTGCTCTACAGGTATTGATGATACTAGCATCTCTTTTGGACCTGTAGAAGGTATGTCATCGTAATCCAGCTTTCAGCTGCCTACGTACTCTGTATTGTTGTTTACTCGCGTCCTTCATCATTTTAAATTTCCAAAATGAATCATGTGAGGTTTTAATTCCTCGAGGCATTTTGGTTTTGACTTGATTCTTATACTGGTAAGTAGCTAATACACACCACATCCGAGTAACATAATAATGGTGGAATTTTAAACCAGTGTAAGAAAAAACCATGCTAATGTACGTACATAGTCACATGTGTTGCATGGAAATTTAACCAACACTATAGACAACTTTTCAGCATTTTAATGCTTCTTTTCAGGTAAATATTTAAAAAAATGATAGGAAGAGCAACATAAAGGGTGGAATTTTACCTTAAACAGTTTGTTGAGATGATAATTCAAATGCTGTACTCTTCAGTATAGTTCTAGTTATCTTAATTTATTAGGAACTCTTTCTGCTAACGTGTGGCCATATAATTATTTCTTCTCAATGTGGGAAAAATTATTCTTGTTGCATAATGCTTATCATTTATCAGTTTCACTTAATTATAATGTCTAGTACAGTACCCAAATAATGTGCTGAAGTACTCATACTACTTCTTGCTATGCATATGACCAGATAAGGCGGCAATTGTATTGGTGGGAGGAATTATTCACGGGCATATTGCCTAGCATTATCATTTTTTCTATCATCTGGTGTCTACATTTTGCAGAATTTCAATGCCCAAAACTAGTACTCTCAACATTTTAGAATGAAGATTTTAGGGCATGTTCTCTTTGAGTAAATAATGTTGCTTTGAGTGAAAACAATTTTGTTTTTGTTTTATTTTATCTGTTTCCTGTACAACTCTTTGAAACCAGGAAACAAGTTGAAAACAAGGTGACAACTTTGTTACTAGAAATGAAAACGGGAAATGAAAATAGAAGTAAACAAGCCCTTAACATTTCAGGAGAGGGAGTCTCTTTTAAAATGAATATGGACATGCATTTTATTTCCTTTACCATAATTTTTTCTATTTCATTTACCATAATTCTCAAATACTTGCCATATAGCTACTGGAAGACCAACACTTAATCTTGAGAGAAGTTTGGATCATGATGGACATCCTCTTGCCATTACCACAGCTGATGCTGTTGCAGCTGGCGGAGTCCCTCCTTGGAATTGGAGAGAGACTTCTGGAAATGGTAAGCTATGTAGGGCTTCATAGTTTGATGCATGTTTGCTTTCTCACCAATGAAAGAGAAAATGACTGCAAAAATAAGAAGTTAATCATCGAGTCTTGGTAAATGTACATTGTGACAGCAGTTTTGGTTAATTTTTGGAAAGTATTGTAGAACCTGAAAAACATGGTAAAATAAATTATTATTTCATACCCCAAAATATGGAATCAATTATATTCGGTGCCCCCGCCTCTTTAGCTTAATTGCTATCTTATTTGTGAAACCAATTCTTCCTACTTTGGCAGGTGGAGAAAGTCAGTCATGTTGTGGAAGGGTTATATCAGTTAAATGGTGTGATTATACAAGACGAATAGGTATTGACGGCACTCCAGAAGCCATCAAAGAAGCAATCAGAGCTGCTTTTAGGTTGAGAACTAAACGCACATTTTGGTTGGAGGATGAGGACCAGATTATCCGAAGTATTGACCGTGAAATGCCTATTGGAAGTTACACTCTTCACCTTGATGAAGGTTAGATTCACTTTATTCGTCTAATTACTGTTGTGATATGTACACATTTAATGGTTTTATTTAATTTTTAATGTTGTGAAAACAGGACTGGTCAAACCGGTAAACTAGTTTAAGATCTGGTATACTAAAACCACAAAAGTGGTTTGCAATTGAACCAGTAAATAATCGCTTCACAGCTGGACAACAATTTTTTTGAAAGGAAAAAATCTTTCTCAATGTTATTTTTATTTTTTCTTAGAAATAACATCTATAAAATATTTGTCATTTTATTTTGCTTGTTATTTTTAAAGAATATGATCATGTATGGTTGTCCCTTGAATATTATAGCATATTTGATTGTTAAAATCTCAAAGTATTTTTTTAGGTTTTAGTATTTTTAAGTTACGATGTTATATTTATCTAATTATAATTGCAGGAATGGCCATTAAATTATGTCTCTATGACGAGTCTGAGCACCTTCCTGTGCATACTGAAGATAAGGTATTTTACACTGAAAATGATTACCGTGATTTTCTGACCCGGCGGGGTTGGGTATGTCTAAGAGAATTTGACGGATATAGAAATATTGACAATTTGGATGATCTTCGACCTGGTGCTATATATCGTGGTGTGAGTTGAAACTTGAAAGTAGATGGTATGATCAAATTATCTGGAGAACTATGGTGGGTCTGTTCAGGTTTTTGATATATGTGCGACACTAACCTGAAATTGTATTAGTTTTACATTTGATAACGCTGTTTATAGTTTTTTGATAGGTAAATTAACTAGCCCTTCTGCACAAAAATCCGTTTCAATCAATGCCGTTTACATGTCTGTAAATATGCATTTGCAGTGACAACATATTATTATTATTGTCTAGATTTTTTAATGGATCATTTTCGTC