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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21497 LG5 33719735 33721463 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 33720061 upstream_gene_variant
T/C 33720068 upstream_gene_variant
A/T 33720276 upstream_gene_variant
C/A 33720284 upstream_gene_variant
A/C 33720568 upstream_gene_variant
A/G 33720580 upstream_gene_variant
A/C 33720583 upstream_gene_variant
A/C 33720585 upstream_gene_variant
A/G 33720598 upstream_gene_variant
T/C 33720713 upstream_gene_variant
T/G 33720891 upstream_gene_variant
C/T 33720892 upstream_gene_variant
C/A 33720980 missense_variant p.Arg105Ser
T/A 33721006 missense_variant p.Arg97Trp
C/T 33721024 missense_variant p.Glu91Lys
C/T 33721025 synonymous_variant p.Arg90Arg
C/G 33721050 missense_variant p.Cys82Ser
G/T 33721455 missense_variant p.His3Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21497.1
MKHNTVEQGRSRNGSTFLNSMLSSSHYFLFFCILVSISDTDGTELIVANNCKESVWPAILGNGGHPSPKHGGFYLGSGEEVVVQVPEGWSGRIWGRQGCYFDQQTGKAHVDMNNKEQRHSSWTRLQNKQFEKALVLYGEDTPDRWHNIAKEVGDKSVEEVKRHYAILLEDVSRIESGHVPIPEY*


CDS Sequence:
>Vu_21497.1
ATGAAACACAACACAGTTGAACAAGGAAGGAGCAGAAACGGTTCCACTTTCCTAAACTCAATGCTTTCTTCCTCACATTACTTCCTTTTCTTCTGCATTCTAGTCTCCATCTCCGACACAGATGGAACAGAACTCATAGTGGCGAACAACTGCAAAGAAAGTGTATGGCCCGCAATTCTCGGCAATGGAGGACACCCTTCACCAAAACATGGCGGGTTTTATCTTGGAAGCGGCGAAGAGGTTGTTGTCCAAGTCCCTGAAGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTACTTCGACCAACAAACAGGCAAAGCACACGTTGACATGAACAACAAAGAACAACGTCATTCCTCTTGGACAAGACTGCAGAACAAACAATTTGAGAAGGCATTGGTCTTGTATGGTGAAGACACACCAGATCGGTGGCATAATATAGCGAAAGAAGTTGGTGATAAATCAGTGGAGGAAGTGAAGAGACACTACGCAATTCTTTTAGAAGATGTAAGCAGAATAGAGTCGGGACATGTTCCAATTCCAGAATACTAG


Promoter Sequence:
>Vu_21497::LG5:33721463-33723463(-)
ATGTAATTGGCACCGGTTCCAGATTCGAACCCATTTTTCCCTATAATCACAGCCACCATTTCAGAGATTAATAATAACATAACAGCCCTATTAGTGTGATGCAACAAAAACAACCACTTTCTCATGACCGAAATCGGTGTTTACTTTCCACAGAGCCAAATTGTTACGAAGATGCAATCCTTTTCAAAATCAATTCCTTAACGCTTCTGGGTCTGGTTTAGATGAAAAATAAACGGAAATTGAAGAACCAAATAGAGATAGTGGGAAAAAAATGCATACCCGGTTTGATGAATCGCTTTTTTTTAATTATTGGAGGAGAAGAGGGGAATAGGAAGAGAGAATGAACCGACTCCAAAAGTGAGAAGAGAAAAGAACCGTGGAAATGTGACCGGACAGACCGGTTAGGGCATAGAGAGAGGGATCCGGTTGAGTTGGCTTCGCTTGAAATAGATCCGGTTTCGGCGGCAAAAGGTACCTACCCGGACCGGTTTGTTTTGCCACAAAGAATGAGAAAACCGATATTCGTGCCGATCCTCTCCTCCGGAATCTTGTCTCCTGTTTTTATATTATTTTAGAGTTTAAATTTTAAGTATCTTTTTTGAAAAAGCAATTACTCTTACATTAAGTACAAATCAATATATTTTTTTAAGATAGATAACATAAAAACTGCACAATTTACCATGCAGATGTCCATAAACTAATCCAATTCAAGGAAAAACGTTTAAATCAATAACAAAATAACAAAAACACGATCATTTTAGTTGTTGGTTTAAAAAAAAAAGTTAAATCAAATTTCTAGTTTCAAGATAAATTAGTTAAAAACTCTTTATCATATATGTATATTTACATAATATATGTATATTTATATAATGTAGTATTATTAAACATTGCAATTACATTAATAATGAGACATAAATAATAATAATGATAATCAGAATAAACATTTAAGAACCTAATAATAATTGTGTTGATAATTAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACACGTGGGGTTTGCTAATTTACGTAAGGTTTTTTTAGTTGATACATTTTAGCAAAGTATATCAAGTTTTAATGGAAAAAAAATCTAATAAAAGTTAGTTATTGACTTAATAACTACTTTTTATTTTTTTATTTTGAAAAAAATTAATTACTATTAATACACATGCCAGCAATCATGGATGATAAATAACTATATGACAGCAATCATGGATGATAGAGTTTAAGATTTAGGGGTTAGGGTTTATGTTTAGAGTTTAGGGTTTAGGTAGGGTTTAGGGTTTAGCGTTTAGGATTTAGAGTTTATGGTTTAGAGTTTAAGGTTTAAGTTTTTTTTTTAAATAAAAAATAAAAGATAGTTATTAAGTATAAATAACTAACTTTTATTTTTTTATTTTAAATTAAATATTAAAATTATTAAAATATTCTTGGTTTAAAGTATGTTTTTTTTTAATGGAGATTTTTTTCTCCATTAAAACTTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATAACATTAGTAAAAGATATTTTTCTCAATTTCTTTATACATATTCTAACTAGTTTAGATGTATTTGAGTAGTGAATTAGGTTAGATATATCCATTGAGTTAAGTAAATGTATTATTTTTGGCATGAGAAAGAATATAAATATCCAATTGTAGTCATTTTGATTAACCGGTATTTAAAAAAAAAGATTTTAGTTATCTTCATGGTTTTCTGGAAATAAACTACTAACATAATTTTCTTTTTCACATCTAATTAAAAATCTCTGCTTAATTTTTCTTTAACAAATATTAATTCTCAAGGGAGAATAAGAGGTGAAAGTGGTGGGAAACAGTTTTCAAACATGATTAGAAAATGGCTAAAAACAAGGAACCTCCACATAGCTTTTTTTCCTTCTCAGCAGCACCATGAA


Gene Sequence:
>Vu_21497(-)
ATGAAACACAACACAGTTGAACAAGGAAGGAGCAGAAACGGTTCCACTTTCCTAAACTCAATGCTTTCTTCCTCACATTACTTCCTTTTCTTCTGCATTCTAGTCTCCATCTCCGACACAGGTTCTGATTTTCTTCCCTCTCACAATCCATGCATAAAGCTTTTCACATCATTTTTTGTCTTCATGATTAGCTATTCCCTTGAATGTTAAATGTTTGTAGTCTTCATTTGTGGTATTAATGCTTATAATAGTTTTACTCTGAATAATTTATGGTGTCATGTGAAACAGATGGAACAGAACTCATAGTGGCGAACAACTGCAAAGAAAGTGTATGGCCCGCAATTCTCGGCAATGGAGGACACCCTTCACCAAAACATGGCGGGTTTTATCTTGGAAGCGGCGAAGAGGTTGTTGTCCAAGTCCCTGAAGGTTGGTCAGGGAGAATCTGGGGCAGACAAGGGTGTTACTTCGACCAACAAACAGGCAAAGGTTATTGTCAAACAGGAGATTGTGGAGGGCTATTGCAATGCAATGGTATCGGTGGAGTCCCTCCAGCAACCCTAGTAGAAATGACCCTTGGAACCTCAAAATCAGCGTTGCATTTCTATGATGTTAGTTTGGCTGATGGGTTTAACCTTCCAGTGTCAATGAAGCCAGTGAGTGGTAGTGGTGCAGGTTGTGGTGTTGCTGGCTGTGAAGCTAACTTGAACGTTTATTGCCCTTCAGCTTTGGTTGTGGAGAGAAATGGGAAGGTTGTGGGGTGCAAGAGTGCTTGTTTGGCAGCAAAGTCAGATAGGTATTGCTGCACTGGTGAGTTTGCTGGAAGATGCAAGCCAACTGTGTTTGCTCGTCTCTTCAAGACCGTTTGCCCTAATGCTTATAGTTATGCTTTTGATGATTCATCAGTCCTCAAGACTTGTGTGGCACCTCGCTATGTCATTACATTTTGCCCTCCACATTGATCATTTCTCTGTGCTGTTTTCACTCTTTTCTTCTTCTTCTTCATTCAGTCTAAACTGTTGTTTCTCTTAGTTTTGCAATTTTCAAGTTTCATTTATATCTATCAGATTATTAATCTGTTATATTATATCATATATAAAGTCATGAAATATATAACTTATAGCTCATCTCCTTTGTTAAATCATATATATTTATAATTTTCTAATTAATATTTACTTAGAAAACAATATTCATCCACGCATGGATTATATCATACTTAAAAATAGCACTGATGTAAATTAAAAACAATTAATAACCAGTGAGATTCATTCATATCTTTTTGGGTGTCATTCAGATAAGGATATTAACAGAATTGATATCTGTCAGTCATTCAATCTATTTATATTTGTTTCTTCAAGGTTATCCACGACTGACCCTATACTCAAGCCACAACTTACGTAAATGTTGACTCCCCTCCATAAAGGATAAGTGCAACAATCGTAGCAAACATATACATCAATATTTCTCTTATTGTGTACTTTCAAATGGAATGAAAGCACACGTTGACATGAACAACAAAGAACAACGTCATTCCTCTTGGACAAGACTGCAGAACAAACAATTTGAGAAGGCATTGGTCTTGTATGGTGAAGACACACCAGATCGGTGGCATAATATAGCGAAAGAAGTTGGTGATAAATCAGTGGAGGAAGTGAAGAGACACTACGCAATTCTTTTAGAAGATGTAAGCAGAATAGAGTCGGGACATGTTCCAATTCCAGAATACTAG

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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