Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21474 LG5 33452139 33453647 PREDICTED: putative transcription factor bHLH086
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, root hair initiation, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, root hair initiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, root hair initiation, regulation of transcription, DNA-templated, root hair initiation, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding
SNP Position Effect Amino acid change
G/T 33452216 missense_variant p.Glu26Asp
C/A 33452341 missense_variant p.Pro68His
T/A 33452464 missense_variant p.Leu109His
T/G 33452470 missense_variant p.Phe111Cys
T/C 33452561 synonymous_variant p.Gly141Gly
C/A 33452598 missense_variant p.Gln154Lys
A/T 33452683 missense_variant p.Gln182Leu
A/T 33452821 intron_variant
T/A 33452836 intron_variant
T/A 33452861 intron_variant
A/C 33452871 intron_variant
A/G 33452902 intron_variant
G/A 33452967 intron_variant
T/G 33453121 intron_variant
C/T 33453127 intron_variant
T/C 33453179 intron_variant
A/T 33453277 splice_region_variant&intron_variant
A/T 33453312 intron_variant
C/T 33453316 intron_variant
T/A 33453500 intron_variant
A/T 33453621 stop_gained p.Arg330*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21474.1
MALAKDQNIPHDSTMSTKVPNCVFSEAVETTSVTVHRVNEYHKSVIEEENGSQTTNGLSNDSGITHSPPLSGSGKGYTYKEKSYQLDEEESLIHFKGYSNLMQGGESLLSFQHNRLVPNSCYSKDISQKEYCVWENSLHQGHNHWNQHSPRSNQDMRLVQDFNCFQTASGYGSMVDNAKEKQYGERSSGWLYSASTIPNDKSLHNLAAREMVLQKRPSMGESMKAAKKQCSTESKTLKHKSSPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDMVTMLEKAISYVKFLQLQVKVLATDEFWPAQGGKPPDISQVKEVIDAIRSSQRERSLNSK*


CDS Sequence:
>Vu_21474.1
ATGGCACTGGCCAAAGACCAAAACATTCCACATGATTCAACCATGAGCACCAAGGTTCCAAACTGTGTTTTCAGTGAGGCCGTGGAAACTACCTCAGTGACCGTTCATAGGGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAAATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGACGAAGAAGAATCACTGATTCATTTCAAAGGGTACAGCAATCTCATGCAAGGTGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAGTTTGCATCAAGGTCATAACCACTGGAATCAGCATAGTCCAAGAAGTAATCAAGACATGCGCCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATGGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTATACTCAGCATCAACTATCCCTAATGATAAGAGCCTCCACAATTTAGCAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACGCTAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAAGAACTAGTGCCTAACGGCTCCAAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTCAAGTTTCTTCAACTTCAAGTGAAAGTGCTGGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG


Promoter Sequence:
>Vu_21474::LG5:33450139-33452139(+)
ATAAAGTATTCTTTTTACCTAATTAAGTTTGATAGATGAAATTTATATGTATCAATTCCAAGCGAAGTGTTGGATTCTTTTTCTTTTTATTCCACCATGTCATATTTAGCTGGGATTTTTATATCCCGAAAATATTTTAATTTTCTTGATATCTTATTAGCTGCATAATTATCAGCTATTTGTATCTTTATAACTAATATTTTATTTTATGAGAAAATGAATACATATTTTTTAATATTTTATGCAATAAAGATTTAAGTTTTCTTTCTTCATAGAAGTGAATAACTATCTAATTTTTTTATTCAATTACAATATATAAATATTTGAATCTAGATGTTTGATGCTTTAATTGAGAAAATAGTACAAGGTCTTGATAAGTTGTTAAAGATAAAAGTTTTATGAGGCATTTATCACATTAAACTAATTTTAATTACTTGTACAAATGTTACATAATAAGAACATATTTTGGTTTTTAAATACATTTTACAATTTTGTATCATAAAATTTTAACAAAATAAGTGTGTTTAATTAATGCTGAGATTTCTGGCTCAAAGCATTCAAAATTGTTGGGTCTATCATCCAGTTACATTATTATCGTTAGGTTTAACTCATTAATCATCAATAAATGACTATTATTTCTGTTAATTGTCAATCAATAACTATTATTCTCATTAACTGCTCATTAATGACTATTATTGCTTAGAATAATTTTCAGATCAGTTGGTCTATGATCAGTCGCTCGGTCCTTTAACTGGTCGGATGGTCCTACCGTACAATAAAAAATAAAGAAAGTGATAGAAAATTTGAAATAAAGACATGCAAGACTGTATGCCGCGCAGTTAATCATTAACTAACTATAATGGTTAATCATAGACTTACTGTTCTTAAGCCCGTTCATTAGGTTTGTGTAGAAACTATAACATTAAAAAAAAATCATTGTCATCTCATACATATGTTGACATTTTAGCATTAATTAGTAATGTATATTGTTTCAGTCTATTGGGATTTAGATACTTGCAAGTAGTGACCCTATCATTAAATCAAGACCAAAGGCTTAAAATTTAAATGCAATGAATGTTTGACAAAAGAAATCATTATCATACATATGGATTGTTCTATGTGAATTTACATGAACAGTTACTTAGTTGTCACATGTGTGCTTCCTCGAAACCTTCTGACCTTGATTTCAATTTCTTTCTTTATTCTTCTTCAGATGTACTTTTTACATTTGTACATGGCAATGTTGACCTTTCTCCCTTTTTAGAATTTGTACATCAGCACTAAGAACCATCAAAAACAAATTTTCCTTATGAATAATACGTTAGCTTTATGTCTCAGTCTTATTTAGAAGGTGTTTTTGCATAATAAACTGAAGGTTCATGAAGTATAATAGTTAAACTTGTGTACAAGAGCCCAAAGATTAAAAAATCCTTTGTTTGCAATTTTACTACAACCAAAAAGAATTCAGAATCAAAAGTACATAAATGGAACAAATGCAAAATCTTCATGCCAATCAGTGTTGTTAGCCCATTCAATAACTATTTCTAGACAGCAGCACAGAATGTTATCATAAAGTATAAAATAAAACACAACTCCACGTGCTCATGGTGAGTGAAAGGAAACATGTAAGAAACAACCTCAATAACCTCCAGCTTCTTCTTCAAACAGAGACGTGGGTCTGTGCGAAGGAACCGGCGATCCTTGTGCTACTTTCCAATGCTTTCATCTTCTCTCATTTCAATGCATTAACTTCTGCCAGCTAACAATCCCAATATGAAGATGAATTAATCTCACATTATGGAAACTCATAACCTCCCTTAGTATTATACTATTAGATTATGATTTCTTGTTTCCCCATACTTAATATTTCTGTCACACACTATTCCCATCTCCATTAATGTATAAAATAACATTTGAGTTGAATGTTTGACATCTACAAATACGCCTCCCTTACTATTCCCAGTTGACCAACCTCAACCAACCTTCCTTTACCTCTCTAA


Gene Sequence:
>Vu_21474(+)
ATGGCACTGGCCAAAGACCAAAACATTCCACATGATTCAACCATGAGCACCAAGGTTCCAAACTGTGTTTTCAGTGAGGCCGTGGAAACTACCTCAGTGACCGTTCATAGGGTCAATGAGTACCACAAATCAGTTATAGAAGAGGAAAATGGCTCACAAACTACCAATGGCCTCAGCAATGATTCAGGTATAACGCATTCTCCTCCTCTATCCGGCAGTGGCAAAGGGTATACTTATAAGGAGAAAAGTTACCAGCTTGACGAAGAAGAATCACTGATTCATTTCAAAGGGTACAGCAATCTCATGCAAGGTGGTGAATCTTTGCTTAGCTTTCAGCATAACAGGCTGGTCCCTAACAGTTGTTACTCGAAAGATATTAGTCAGAAAGAGTACTGTGTTTGGGAGAATAGTTTGCATCAAGGTCATAACCACTGGAATCAGCATAGTCCAAGAAGTAATCAAGACATGCGCCTGGTGCAGGATTTCAATTGCTTTCAAACTGCTAGTGGCTATGGCTCCATGGTCGACAATGCAAAAGAGAAGCAATATGGCGAACGTTCATCAGGGTGGCTATACTCAGCATCAACTATCCCTAATGATAAGAGCCTCCACAATTTAGCAGCACGAGAGATGGTGTTGCAAAAGCGTCCTTCTATGGTATTCCTTTGCAATATCATACCAAAACCATATTCATAATTGAACGCTTAGCATGCACGAGTTCTTATTAGGTTCAACTTTTCTGTCATCATTGTACAAAAAGAACATGTTCATAACTGACTAGTCCTTAGAAAGCTTTCTGAAGGTATAGAATGGTAACTGGTGAAGTTTGACTTTGAATTTGCAGGGAGAGAGCATGAAAGCTGCAAAGAAGCAATGCTCAACTGAGAGCAAAACGCTAAAACATAAGTCAAGCCCCTCCAAGGATCCTCAAAGTGTGGCTGCCAAGGTTTGCTTCTATCCTAAGTCAATTTATTATGTTATATATATACGGACAAAGTTTTGATTGTAAACAAAGCAAAGCTAAAATTAAGAGAATTCAATGTTCATAGAATGTTTGTCTTGCAGAATCGAAGAGAGAGGATAAGTGAACGACTGAAGATACTACAAGAACTAGTGCCTAACGGCTCCAAGGTGCTTTACTTTTCTTTCTCTTTCACTTCATTTGTAGCAATAAGGCCAGGCTTTTTGACACATCAGAATGATCTTGATGATGAAATTTGCAGGTTGATATGGTTACCATGCTGGAGAAAGCAATTAGCTACGTCAAGTTTCTTCAACTTCAAGTGAAAGTGAGTACTTTTTCTTGTTTTTTATGTGAACATTTCGTTTTTCTCTGCAATATATTAGCATGGTAACATCTTTGCTTTCTTATTGTTAATGGTGCAGGTGCTGGCAACTGATGAATTTTGGCCTGCGCAAGGTGGAAAACCTCCTGATATTTCTCAAGTAAAGGAAGTCATCGATGCCATTCGTTCATCACAAAGAGAGAGAAGTTTAAACTCAAAGTAG