Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21335 LG5 32105439 32108161 PREDICTED: transcription factor PIF3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of photosynthesis, light reaction, regulation of transcription, DNA-templated, de-etiolation, red or far-red light signaling pathway, unidimensional cell growth, unidimensional cell growth, regulation of transcription, DNA-templated, regulation of plant organ morphogenesis, red or far-red light signaling pathway, signal transduction, gibberellic acid mediated signaling pathway, red or far-red light signaling pathway, regulation of transcription, DNA-templated, red or far-red light signaling pathway, gibberellic acid mediated signaling pathway, unidimensional cell growth, regulation of photosynthesis, light reaction, gibberellic acid mediated signaling pathway, de-etiolation, response to water-immersion restraint stress, regulation of transcription, DNA-templated, regulation of photosynthesis, light reaction, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of photosynthesis, light reaction, gibberellic acid mediated signaling pathway, regulation of plant organ morphogenesis, positive regulation of anthocyanin metabolic process, response to red or far red light
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, identical protein binding, transcription cis-regulatory region binding, protein binding, identical protein binding, protein binding, protein binding, protein binding, DNA binding, protein binding, identical protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein dimerization activity, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, DNA binding
Pathway   B 09132 Signal transduction   C 04075 Plant hormone signal transduction [PATH:ko04075]
SNP Position Effect Amino acid change
T/A 32105740 missense_variant&splice_region_variant p.Phe20Ile
G/T 32105935 missense_variant p.Arg52Met
G/T 32106021 missense_variant p.Asp81Tyr
G/C 32106098 missense_variant p.Lys106Asn
G/T 32106099 missense_variant p.Asp107Tyr
C/G 32106534 missense_variant p.Pro252Ala
T/A 32106762 intron_variant
A/T 32107071 missense_variant p.Lys347Met
G/A 32107077 missense_variant p.Arg349His
C/A 32107291 downstream_gene_variant
T/A 32107372 downstream_gene_variant
C/T 32107536 downstream_gene_variant
G/C 32107656 missense_variant p.Gln411His
G/A 32107710 synonymous_variant p.Leu429Leu
G/A 32108127 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21335.1
MIQDMPDSTRSAMTRSSYSFYDNDFLELVWENGEVVARGGSSNKSPSIKRTRLNPLYSLEDHLSPLKESDMSSSYQSNAQDSCHSSQNKNSCKLNEEFENLLRPAKDSKPVTPGHGLLQQCSPSSPLKKQRTDSTQTPPPPPNTRHMGFDQTTAKVNFSNFSIPAVFLKSSTCHGSSTTQQTKHYSYPARMEEIEARKVEKSTKESQGFQKQTSLTVERSAKPPPPLDEHSEAIGLGIHRHQGQLRYDQTSPSEALRAKEKAYNNNNTVCKEPFLASSVCSLGASNDPNVGIRKNEDTDDSTYLSDNDEEPENRVKQDGEGNRLKRSRNAEVHNLSEKKRREKINKKMRTLKELIPNCNKVDKASMLDDAIEYLKTLKLQLQIMSMGSGLWPLMMLPAAAAPHMNGPHLSQLVGAGMGFRPPELPVPPLSAITDSRLHQMFGFPNQIPTMPMPHAPFFPVIGNSPTQPHLAATTAPTQHLAKSAASLQVSLPTNLDPLENATNQLQNPVSFHPHGISTPFIFPQK*


CDS Sequence:
>Vu_21335.1
ATGATTCAGGATATGCCTGACTCCACCCGCTCCGCTATGACAAGAAGCTCCTACTCCTTTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCTCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAATTTGAAAACTTATTAAGACCGGCAAAGGACTCTAAGCCCGTTACCCCAGGACATGGTCTCTTACAACAGTGTTCACCTTCATCTCCTCTCAAGAAACAAAGAACTGATTCAACTCAGACACCACCACCACCACCGAACACACGGCACATGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAACATTATTCATATCCAGCGAGAATGGAGGAGATTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCTGGGAATTCACAGACACCAAGGTCAACTGCGTTATGACCAAACCTCACCCTCAGAAGCACTTAGAGCGAAGGAAAAAGCTTATAATAATAATAACACTGTCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGACGACTCAACATATTTAAGTGATAATGACGAAGAGCCTGAAAATAGGGTAAAGCAAGATGGGGAGGGAAACAGACTCAAGAGAAGCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAGACTCTAAAGCTTCAGTTACAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCACATTTATCACAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTGTTCCACCACTGTCAGCTATCACAGACTCCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCACGCACCTTTCTTCCCCGTCATTGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCGCACCTACACAACATCTTGCTAAATCTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAG


Promoter Sequence:
>Vu_21335::LG5:32103439-32105439(+)
AAGATTATCGAAATCTTAAAAACTCAAAAAACGTAAATTACTTAACCAGTCTAGTTCTAATCAATTAAAACCTTACAAATTCATTATAAATAACATTGTTCACAAAAGATAAATATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTATCTAACACATATATCTGATTTGAACATGAGAATGTTTTTTTTCAAACATACTCTTTTCTCGATATTTTAGACCTAATACATTTCAAATTACTTGAAAGTAAAATATGAACAAGATTAAAAAATATGAATAGAATTCTTATAAATATTTTGATTTTGTAAGAATGTGTGTGTGTGTGTGTGTGTTTTTTTTTTTTAAAATAAGTTAAACCAGGTTATATAAAAGATAAACCTTTCAAAATATCCTACACAACATAATATATCCACAGGCAAAAGTTAAATGATGTAAATTACATATAAACAACTATGATAGAGAGATATGACAGACATATTATTATTATTATTGAAACCTTATTAGAGTAAAAATTAATATTTTAGAATTTTTTTTTCCGAAAATGAGTTTAGTTTAAACTAAATTAAATTCCTGGAAAAAAATTGGACAGCGGTGGACAATAATAGATATAATGGGCATCTTGAATATTTTGTTTGCAACTGAGCAAAATAATGGCATAGTAATTATATATATATATATATATATATGCATAAATAATTTATGTTTTTATATTTAAATATTTGATTGTGGTTCATTAGAAATTATGAAAAGTAGAAAGTAGGCATATATATGATTAGATAGTATTTATCTATTAGAATAAATTTTGATTTAAAAATTTGATCGGTGAAGGTGTGCAATAATTTGAAGAAAAATTGGAGAAGCGTGTTGTGGAAATATGATATGTGCGAGGACAAGTGTATTATGTTATCCTCACGCCCGTAGAGTGTTATGGTGTCGGGAACTGTGACTGTTGTTTGGGGGTGTGTGGTGTGGTGGCTGTGTATGTTAAAATTCCAAGTATCGATATCGATGAACGCGAAAAGTACCGACAAGAGTACACGGTGGCACGTGAATTGAATGTGAGTTTCACGTGAAAGTGGGAGACCCACTCGCAGATTTTCTCTATACCTAAGATTGAAAGATGAGACATGATGCATGAGGGAGGGTGTGCCTATGTGTGAACCCACTGGTCCCTCCACTTACATCCTCATGGTTCAGCCTCTTCCAACATCACAACCTTAGATTCCTTTTCTTCTTATTATCATCTACACGTCTCCCTCTCTATCTCTCCTTTGATTTTCCTAAATAAAATCCACAACTAACCATGTCGGGAACCTCTGCATCTTATCCTTAATCCCATTACATCTATTGCTCTTTCATCTCTTTCCTTAATTATTAAGAAATAATAATAACCTCAGTTAAAAAAAAAACAACATTCTTTAACCAGATTCTCTTCATCTCACGTAAATTCTTCAAATCCTTTTGATATGAAGAATTTGAGACAAGAACGAAAAAGCAAAAACAGAAACATCTGGTTTCATCGGCCGAGAATATATTCAAGATAACTTGTCTGTGCATGCGTGATTCAGTTTGTTTAAAAAAGAAACAAAACAAACAATATAAAGATAGAAATAATGTATATGTTTATTTAAATATCTCCTTTTGATTTGGGAACATGGTGTGTCCTTATGTTTGATATATCACATATCATTAGGAAAATGTGGAATAAAAATGCCGGAAGTTAGGAAAGGAGGAGAGATGACGCTGGTCCAATTCGCTTGTTTGATACCTAACCAGTTTCATAAGATGACAAAACAGAACTGCATGAAATTTGTGGTCACCTTTGAGAGAATTAATCCACCCACTTTTTTATTTTTTATTTCGCTGAGTACTAGGAATTAAACTGGGAAATGACTTGTATGCCATTCCAATCAATACCACATTGAGTAGTACGTAGTATTTATTACCAATTCCCTCCTAGCAGAGCCATA


Gene Sequence:
>Vu_21335(+)
ACATTACATTCATTCCCTCACATCCCAACATTTTCCACCGTACAACAAACCACTGCAATCCATTATTTCAGCACTACTTCTCATCAACACCTATAGAGTTCGTCCTTGCACACCGCCAATTCCTCGTCACAACTTAATTTCAATTTGTTGCCTTCGTCAACTCATGTGCAACCCAGAAACAACATAGCATCAAATTCAAGCAAGGAATCTCAATTGTTTATCCCAGTTAATTTCATTCAATCAAATGATTCAGGATATGCCTGACTCCACCCGCTCCGCTATGACAAGAAGCTCCTACTCCTTGTAAGTGTTAATTAATCTGGATATCATGGCTCATATCATAATATCCTTTCTATATATTCCTCGTTTAGTTTTAATCAAAGTGAGTGATTTTGTTTCAGTTACGACAATGATTTCCTTGAGCTGGTGTGGGAAAATGGTGAGGTTGTTGCACGAGGAGGTTCATCAAATAAATCACCCAGCATAAAAAGAACAAGGTTGAACCCTTTATACTCACTTGAAGATCACCTTTCCCCTCTAAAGGAATCTGACATGAGCTCTTCGTATCAAAGCAATGCTCAAGATTCCTGTCATTCCAGCCAAAACAAGAATTCCTGCAAGCTTAACGAGGAATTTGAAAACTTATTAAGACCGGCAAAGGACTCTAAGCCCGTTACCCCAGGACATGGTCTCTTACAACAGTGTTCACCTTCATCTCCTCTCAAGAAACAAAGAACTGATTCAACTCAGACACCACCACCACCACCGAACACACGGCACATGGGGTTTGATCAAACAACAGCTAAAGTGAACTTCTCCAATTTTTCGATACCTGCAGTCTTTCTCAAATCCAGTACTTGTCATGGAAGCAGTACAACTCAGCAGACAAAACATTATTCATATCCAGCGAGAATGGAGGAGATTGAAGCGCGTAAGGTTGAGAAATCAACTAAGGAATCACAAGGGTTTCAAAAGCAAACATCCTTAACCGTTGAAAGAAGTGCAAAACCACCCCCACCCCTTGATGAGCACTCTGAAGCTATTGGTCTGGGAATTCACAGACACCAAGGTCAACTGCGTTATGACCAAACCTCACCCTCAGAAGCACTTAGAGCGAAGGAAAAAGCTTATAATAATAATAACACTGTCTGTAAAGAACCGTTCCTAGCTTCTTCTGTGTGCTCTCTTGGAGCTTCAAACGACCCAAACGTTGGTATCAGGAAAAATGAGGACACCGACGACTCAACATATTTAAGTGATGTAAGTGGAAACCTGGGCTATGTTTTTACCTTCTTTATCCCTTCGTGTTAGTTACCGTCAGTCTCATGGAACATGGATCAATTTGTTTGATGCAGAATGACGAAGAGCCTGAAAATAGGGTAAAGCAAGATGGGGAGGGAAACAGACTCAAGAGAAGCAGAAACGCTGAGGTTCATAACTTATCTGAAAAGGTGAGGAAAAAGTTTAGCATATGGTAAAGTAGATCCCATGAAATAAAATACACCTTAAAATATATATATTCACAAAAAATAAATAAATAACAGATCAAGAGCTTGTATATCTATAAATTAATTCCATGTATCTGACCGCTGTGGATATTTTTGCAGAAGCGTAGAGAAAAAATCAACAAGAAGATGCGTACATTGAAAGAGCTCATACCAAATTGCAATAAGGTACGTCTGAGTGAGTACGAGTGCATTCAAGACAAGAAACTACTGTACATAGTTCATAATCATTTTGATCTTTACTAATTTAATTTTATATGATATATAGTTCTATATCATTAATTGTTTTTCATAAATTAAGAAATTAAACTACATATATCACAGATTTACTAGGACATAATACATACCTGGTAATCTCAGACTTAACTTTCTCATCAAGTGTGCTAATCTTTACAAGCAAGAACTTCTCGCCCTTGTTTTCTCTAAGTTTTGCCTTGTACATCTCTCTAGGTGGACAAAGCATCAATGCTTGACGATGCCATCGAGTATCTGAAGACTCTAAAGCTTCAGTTACAGGTAAAATTTGAAGTCTATTTGTGTTGTATTGGAGACTTGGCCTTGATTTACAGATATAGGAATTTGAAGGAAAGTACAAAGCTTAGAGTTATGTATGTGAAATGATGCAGATAATGTCAATGGGAAGTGGATTATGGCCACTTATGATGCTACCTGCTGCGGCAGCGCCTCACATGAATGGACCACATTTATCACAGTTGGTGGGAGCTGGAATGGGATTCAGGCCACCAGAGCTTCCTGTTCCACCACTGTCAGCTATCACAGACTCCAGACTTCATCAGATGTTTGGTTTCCCCAACCAAATACCAACCATGCCAATGCCTCACGCACCTTTCTTCCCCGTCATTGGAAATTCTCCCACACAACCACACTTGGCCGCCACCACCGCACCTACACAACATCTTGCTAAATCTGCTGCATCTCTTCAGGTCTCACTCCCCACCAACTTGGACCCTCTGGAAAATGCAACAAATCAACTGCAGAATCCAGTGTCCTTTCATCCCCACGGCATCAGTACTCCTTTCATTTTTCCACAAAAGTAGAGGTAAATGTACAGTGAGTGATGAAATTAAGAAATTAGATTAGAGAAGTTCATAGGAGGCCGGTGTAGAATTTCGTTTACCGTTTTTAAAAATACACTGTACATTTTTCTCATCCCAGAATATCAGTTGCAGAATCTGACATTTCACAGTTTCGTGCGTG