Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21298 LG5 31763144 31764239 PREDICTED: transcription factor MYB108-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to phosphate starvation, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, response to water deprivation, response to abscisic acid, cellular response to phosphate starvation, cellular response to phosphate starvation, response to abscisic acid, response to water deprivation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to salt stress, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, response to abscisic acid, positive regulation of transcription, DNA-templated, response to water deprivation, positive regulation of transcription, DNA-templated, response to abscisic acid, regulation of transcription, DNA-templated, response to salt stress, cellular response to phosphate starvation, positive regulation of transcription, DNA-templated, response to water deprivation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, calmodulin binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 31763217 missense_variant p.Ile247Phe
A/T 31763219 missense_variant p.Val246Glu
A/T 31763243 missense_variant p.Met238Lys
T/A 31763245 synonymous_variant p.Thr237Thr
A/G 31763293 synonymous_variant p.Val221Val
G/T 31763396 missense_variant p.Thr187Lys
G/A 31763423 missense_variant p.Pro178Leu
A/C 31763698 downstream_gene_variant
G/A 31763881 missense_variant p.Ser73Leu
T/A 31763885 missense_variant p.Thr72Ser
G/T 31764000 downstream_gene_variant
A/T 31764065 splice_region_variant&intron_variant
A/G 31764068 splice_donor_variant&intron_variant
T/G 31764159 synonymous_variant p.Pro27Pro
C/T 31764207 synonymous_variant p.Ser11Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21298.1
MERSLSENGSSGTYGSSEEEMSITKGPWTEEEDSLLFDYITVHGEGHWNSVARYTGILRWLNYLRPNVRRGNITLQEQLMILDLHSRWGNRWSKIAEHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDTLRFVWMPRMLERIQAQASSSGQAQTTLMSNVQAHSDPCGGATATATATASASDAGFPSEASSAADVHGHSLSDSGASYSLMGGGSWCSYGAEEGYGREWEERNNGYSEIAGSDFGGVDMWTEENICFLQQQLADDF*


CDS Sequence:
>Vu_21298.1
ATGGAGAGGAGTTTATCAGAAAATGGTTCATCGGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACCAAAGGTCCATGGACAGAGGAAGAAGATTCACTTCTCTTCGATTACATCACAGTTCACGGTGAAGGCCACTGGAACTCTGTCGCTCGCTACACAGGCATACTCAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATCACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTGGTCGAAAATAGCTGAACATTTACCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTGGAACGGATTCAGGCTCAGGCCTCATCATCGGGCCAAGCCCAAACCACCTTAATGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACCGCCACTGCCTCGGCCAGTGACGCGGGTTTTCCGTCAGAGGCCTCATCTGCGGCTGATGTCCACGGCCACTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTGTTCGTATGGTGCAGAAGAAGGTTATGGCAGGGAATGGGAAGAGAGAAACAATGGGTACTCGGAGATAGCAGGAAGTGATTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTCTGA


Promoter Sequence:
>Vu_21298::LG5:31764239-31766239(-)
AGAACTAGAAACATTAAAAAGAAATAGTTTAAGTAAATTGTTAAAAATACTTAATTATTAAGTTAATGATATAAAATTTGGAATAAATATAAATAAATTATTGAGTTCAACGTTAGACTCAACCTTCTAAATTTCTTTGATTAAAAGCGAAAATTAATTAAGTATAAAGTTAAAATTAATTCATAAATATGATAATGTTAAGTATGTAGATTAAAAAATAAAGTCAAATTAAAAGTATGAAAGACAATAATTAAAAGAGACATCAAATACACGAAAAACGTGTATAACATTTAAAAATTACCGTATGAATTAAGATTATGAGTCACTCACCCGAAACAGTGCACTCATTTCTTTCTTTCTTTTTATTACAATTAAAGTCATATATCAAAGTAAATTTGCATAATTTATTTGTGTTTTCATTGTCGATGAAAATGATTTGATTTTTTTGTTATAAGAAAGTATGAAACCATCCCCATTAAGTTAGTGATTAAAATTCATGTTAACAAAATATTAATGAATATTATTAATTTTGGTTCATATATATATTGTTTAAAAATGTAGTTGGAAGGTAGTTTGTAACTGTTGGAGTCAACCCTTGGTATGAATATTAATGAACGTATTTGACAACTGACAAAGATGGGTAATGACAAATTCTAACACATTCTTTTCCCACCACATAATATCAACATAAGTCTTCTCTTCCGATATAATTACATAACAAAATATCACAAACCTCATATCAACATTTTTTTTTTATATAGTTTTGTGTTGATTAACTAGAAATCAATATGTACAGTTGGAAATTGAATGTTTTTTTCTAGATCACTAACAAATATATTTTTTCTAATTCAAGCGGAAAGGAATGTATTACTCCATATCAACATTTTTTTATAGTTTTGTGTCGATTAACTACAAATCAATGTATATTATTTGAATTTGAGTTCTTTTTTCTGGATAGCTAATAAATATAAATTTTCAAATTCAAGTAGAAAATTATAATAATATAAATTGGAACTATATAACGAAATACTCTTTTCAAAATGATGAAGGGATGCCTTACTTCAAGTATAAGTCTCAAAATTAATTTTTTTTAAAATACTTTATATAGTCACGTTATTTAAGTTAAATACAATTAGAATTTTCACATTTATTAAAGATAAAATCAGTTTAAAATATATAAATAAATACAAATTTTATTTTATACATTAATTTTGTAAAATTGATTCAAGTTTAAAATTCAAATCTTAAAAAATACATTTACATTTGCTATCAACACCAATATTTTTTAGTTTAACACAGTTATTAATTTTATGCTAAAATTATAGTTATAAACCATCTCTTTAAATCTTCAAATATTTAAGGACTGTTGATAAGGAAAAAAAACATTTGTTGTATAAAAATGATTCACCCTCTTTGTAATAAACCCTAATGTTTTGGTCCATAAAATGAAATTTTGCCATATGCAAGGTTGGGCAAAATCGCGTAGAACGTGTCAACTCGAATTTTGGCAGAAGAAAGTTGGCCAGATACAAGACCCCTCCATTTTTTTCTCCATCTCAGACTCAGAATGTTGACCAAAACTAGCTCTGTATTTGACTCGCTTTCTTAAAAAGACTATATTTTAAGGTCCACTTCTCCTATAAACGTGTCCAGAAGTCAAATAGTCAACGCTATATCCAAGGTCAAATTTTATAAAACGCAAAAAGCTAAGGAATAACAACTACTTTCATATCTATCAATCAATTAATAATTCATAGTTGCAGTACTATTCAGCAGCCCACTAAAACGGTTTTGGTATACAAAATTACTTCAACCCAAAAGTGCAAATTCTCCTAAATTCAACCACACCTAAGTTTGGTCTCAAAACTCTTTATATAATCTCCTAAATTCACTGCCATTCTTACTTAACCGAATTAGCCAAACCATATTTTCAACCCAAAACTACTCTTTCTCTCACGCATAACAGTAAAACACAGAAGAATAAGTTTTTGATTTCTGAG


Gene Sequence:
>Vu_21298(-)
ATGGAGAGGAGTTTATCAGAAAATGGTTCATCGGGAACATATGGAAGCAGTGAAGAGGAGATGTCAATAACCAAAGGTCCATGGACAGAGGAAGAAGATTCACTTCTCTTCGATTACATCACAGTTCACGGTGAAGGCCACTGGAACTCTGTCGCTCGCTACACAGGCATGTAATCATTCATGTCTTTATACATATAACCACTCATGAATTATTAATCAAATCAAAGTCTTTATTACACCTCGTCATCTTTGTCTCTCTCACACCCACGTTTTCAACTTCAGGTCTCAAACGAACGGGAAAAAGCTGCAGACTCAGATGGTTGAACTACTTGCGTCCCAACGTTCGACGCGGGAACATCACGCTCCAAGAACAGCTCATGATTCTTGACCTCCATTCCCGATGGGGCAACAGGTACTATACATCTTCATCATCATCATCGTTATTATCTCCACTCGTTTTTATCCTTGAACTTGATAATTAAAGTTCAGAGTTAAACCAACTTTTCATGTGTATGACATAGAATACGTTGAAATGATGTTGTGGTATTTGTTTAGGTGGTCGAAAATAGCTGAACATTTACCGGGGAGAACAGACAACGAGATTAAGAACTACTGGAGAACGAGAGTGGTAAAGCAGGCTAAGCAACTGAAATGTGACGTGAACAGCAAACAATTCAGAGACACGTTGCGTTTTGTGTGGATGCCACGTATGCTGGAACGGATTCAGGCTCAGGCCTCATCATCGGGCCAAGCCCAAACCACCTTAATGTCCAACGTTCAAGCCCACAGCGACCCTTGTGGTGGAGCCACCGCCACCGCCACCGCCACTGCCTCGGCCAGTGACGCGGGTTTTCCGTCAGAGGCCTCATCTGCGGCTGATGTCCACGGCCACTCTCTCTCTGACTCCGGCGCGTCTTATAGTTTAATGGGTGGTGGAAGTTGGTGTTCGTATGGTGCAGAAGAAGGTTATGGCAGGGAATGGGAAGAGAGAAACAATGGGTACTCGGAGATAGCAGGAAGTGATTTTGGTGGTGTTGACATGTGGACGGAGGAGAATATTTGCTTCTTGCAGCAGCAGCTCGCTGATGACTTCTGA