Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_21249	LG5	31372371	31372622	LRR receptor-like serine/threonine-protein kinase HSL2	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
T/C	31372402	missense_variant	p.Ile11Thr
C/T,A	31372408	missense_variant	p.Ala13Asp
G/A	31372430	synonymous_variant	p.Gln20Gln
C/T	31372431	synonymous_variant	p.Leu21Leu
C/T	31372470	stop_gained	p.Gln34*
G/T	31372473	missense_variant	p.Asp35Tyr
C/T	31372476	synonymous_variant	p.Leu36Leu
A/T	31372481	synonymous_variant	p.Gly37Gly
T/C	31372508	synonymous_variant	p.Phe46Phe
G/A	31372513	missense_variant	p.Arg48His
A/G	31372517	synonymous_variant	p.Leu49Leu
G/A	31372597	missense_variant	p.Gly76Asp
C/T	31372612	missense_variant	p.Pro81Leu
C/T	31372617	missense_variant	p.Arg83Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_21249.1

MTTFSGEIPEILASNPNLHQLKLFNNSFIGKLPQDLGQNSDIQDHFERLITSANRFSGTLPEQYDLTNLQPLAFAGREGPPHR*

CDS Sequence:
>Vu_21249.1

ATGACAACCTTCTCGGGGGAAATTCCTGAAATTTTAGCTTCAAATCCCAACCTGCATCAGCTGAAACTCTTCAACAACAGCTTCATCGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAAGATCATTTTGAGCGTCTAATTACGTCCGCGAATCGCTTCTCAGGAACGCTCCCTGAGCAATACGATTTGACAAACCTCCAACCGCTTGCGTTTGCTGGCAGAGAAGGCCCACCGCACCGTTGA

Promoter Sequence:
>Vu_21249::LG5:31370371-31372371(+)

AAATTCAGATATCATCTAAGTTGAGAATGGAAGTTTGCAAAAGATACTTCAACATCAAGACACCAGTGTGACATAAGATAACAATACATGTTATAATAATAAACACATAATTAATTACTTTATGATTAATGTTATTTAGATTAGGTTCATGGATCCGAAGTAAAAAAAATTGCTGTCAACATCTAAACCAGAAAAATTGAAGTAAAATAAATCATATTACCAGATGAAATATATAAGTCAATATATATATATATATATATATATATATATATATATATATATATATTTTTAAATTATAATAAATATTAGTGAAAACACCTGTATTTTTTTATGATAATAAAACTATTATTATTACTATTGTTAATATTATAATTATAAAATTAAATATAATTTTTTATAATTTTATTGTAAATGATTTTTATGTATTATATATATATATATATATATATATATATATATATATTTTATAATAGAAAGATTATTAAATTTTAAAAAAATGGTTAGATTGAAAAAACGATTAAACTTTAGAAAATGATAAAATTAATGTAATAATTATTTTAATTTTAAAAGAAATAATTTAAAGAAAAAAATTGAAAAATAAACGTGGATATGAAGAAACAAAATTTATATAGGCATAGATATTAATGTTATTCTCAAATTCACATGACAAAAAAAAAAAGAGTTTTCAACTTTTGAAACTGACAAAAAATATTGTTGAGGTTGGAAGTTGATGTGGCAAGTTTTTTAAACCTGACATTCACATAGCTCTACGTGAAATTTAAAAATATTTTAACATTTTGATTAAAAAATTAAAAAAAAAGTCATCTTCCATTACAGTCAAGCACCATGTGTCATGTTCATTTTAATTCATCTCCTTCCATCCAGCACCACGAAAGCAAATCGCCACCATGGCCAACGTAACCAGTGCTCAAGCTCTTCGCACACAACTGAACTCATCATCATCTATTTTCTTCTCCATTAAACCATTTGAAACCAGTAAAGGGAAAACAAAATCACAAATCTGAAAACTCCAAATTAGTCACGAACCCTAAATCAAGCTAGACACAAAACCCGAGACTTTCAAATCTCCATAAAACCAATTAGAATTCAAAGCCTACAATTGAAACCCCTAGAGAAGGTAGAAACCAAAACCACTGACAACGTTAGGGTGAACTAGTCGGAGATCGAGATTCGGCGCCGCCTAAAGCTTCATGGCACTGTAACATCAAAATTAGACAATGACACAACCATTGGGATCCTCTTCCACACTTATGGCACTGTAATATGGATTGTAATGTGGTTTCATCTGATAATAATAGCCATAAGTTTGATAGAACTTGAGTGGATCTGGAACAATTTCTTTCGTGGAATCTTTCTTTTCATCTTCCTTCTTTTTATCATCCTTTTTAGGTTCTTCTTTCTTTTCCTCTTTCGCTGCTCCAACAGAAACTATTTCAGTGTGACAGAACTTCCTTAGCTTTGCAACTACTTGTACTAGATCAATGTCCCCAATTAAGGTTAATTTCTTGTCTTTCATATCCACAGAAACTGACTCCACACCTCAACAGTATTTCAAATACAATTTTAGTAATTGAGCCATTGATGCTATATTCTCTGGACTTCATCTCCTGAAACAAAAACCAGTTTCATTCAAGCTAATTCAACCGAATTGAGTGAAAGAAAACCAGCTTTGCCTGTACTACAATATTATCTTTTCATTTTTTATACCCTCACTTTTGTCCCCTCAATTTGTTTGAGCATTGAAAGCAGAGAAGCCAAAGAGATGAGGAACTCGAGAATTTGAAATCTAATTGAATACCTGAAATTCTAGAGACAACCTTCATTGCTTTTTGCTTGATTTTGTCTTCATGTACATCCACCTTCAACACAAGTTTCTGTTACAGCAAAATCAAGCATTTGTTGGACCTCTCTCAGAACAATCTCACAGGAGAACTACCACATGCAATAGCTTTTTTGCGTCTCTATTCTCTCAACCTAAA

Gene Sequence:

>Vu_21249(+)