Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_21097 LG5 30157556 30158620 PREDICTED: MADS-box transcription factor PHERES 1-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, protein binding, protein binding, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, protein binding
SNP Position Effect Amino acid change
T/C 30157591 synonymous_variant p.Ile12Ile
A/G 30157650 missense_variant p.Lys32Arg
A/G 30157659 missense_variant p.Asp35Gly
C/T 30157815 missense_variant p.Pro87Leu
G/A 30157850 missense_variant p.Glu99Lys
C/T 30157924 synonymous_variant p.Asp123Asp
A/T 30158468 missense_variant p.Ile305Leu
G/C 30158538 missense_variant p.Gly328Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_21097.1
MARRKKVTLKLIENFVARKARYRKIRENLLKKVEDVTTLCDVNACAIIYGPGDDVPTVWPSHDIAKELLDKFENAPLPERLKKNVTPQLYIDQMNRKIEKQVMKLKKKNDEKDMSNFLHNIHDGKSLSDLDASDICRLLCYVEGKLKCAGVKVHISEQQLSTKTPTPLVSFPLQNDIDSCANIDEQVFQQQSSLDSTKETGPMNSDSDNNKNTGLPPLQQHAHDNTGLSQVNFESLNLDDIGMVLHSANFNDVIDDNGLAFGMLAQDNYIGICDNGDLGLLHGSSSGGEITGNDIWSSYESFGDISESDTMLPFNNNVQDNIDGTFMGANVENEGVSINNIELSGDQRTTSGDT*


CDS Sequence:
>Vu_21097.1
ATGGCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGGTGGAAGATGTTACGACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGTCCAGGGGACGACGTGCCAACCGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCGACAAGTTTGAGAATGCTCCATTGCCAGAACGATTGAAAAAAAATGTTACTCCACAACTTTATATCGACCAGATGAACAGAAAGATTGAAAAACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCTTGCACAATATACATGACGGTAAGTCTTTATCAGATCTTGATGCTAGCGATATATGTCGTTTACTTTGTTACGTGGAGGGAAAATTGAAGTGTGCTGGAGTAAAAGTTCACATTTCTGAACAACAGTTATCAACTAAAACTCCGACACCACTAGTTTCTTTTCCTCTGCAGAATGACATCGATTCTTGTGCTAACATAGATGAACAGGTTTTTCAACAACAATCATCCTTAGATTCAACGAAAGAAACTGGTCCAATGAATAGTGATTCCGATAATAATAAGAATACGGGACTACCACCACTACAGCAACACGCACATGATAATACGGGGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGGTATGGTGTTACATTCAGCAAATTTTAATGATGTGATTGATGATAATGGCTTGGCATTTGGGATGTTGGCTCAAGATAATTATATAGGTATTTGTGATAATGGTGATTTAGGGCTTTTACATGGGAGTTCTTCAGGTGGAGAAATTACAGGCAATGACATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAGAGTGATACCATGTTGCCCTTCAACAATAATGTTCAAGACAACATTGATGGAACTTTCATGGGAGCAAACGTTGAAAATGAAGGTGTCTCCATTAATAATATAGAGTTAAGCGGTGATCAAAGAACTACCAGTGGAGACACTTGA


Promoter Sequence:
>Vu_21097::LG5:30155556-30157556(+)
GATGCAAAGATCATGTCATGTCATTAATCATTGTATAATATAAGAACTGAAAGTAACTCTTCTGTATGCTCATTAATTAACATTTTTCTGTTTTCAATAAATAAATAAAATCTAAAGAGGCAGTGGAGTTTGGAATAAAAACCCTAGCAAGGCTGGAACAGCTACAAAGGAACACGAACTAAAGTCAATTTTTTACACTCATTTTAAGTGAAAGTTTTAAATCATCTTTGCTGACTGCCCAACTAAATTCCACACACCAGCGTGCGAAATTTAGGATGGAAAATCATTTAAAAAATAATTCATACATTATAATTTATTTAAACTTATACAAATAATTCTCCTATAGGACAGGAGCTCATCTCGAGCATGTGAAAAAGGGGAAATGATATTTTAACGTCTTAAAAAATATTCATTTGACAACCCATTTCAATAATACAATAATATGTAGCTGTATTTGAGTTTAAAAAATATAATTATAAAATATTAAAACTAATTGTTAAGAAAGAATCACAAAATGGAGCGTCGAGTAGGAAAGAATCAAATTAAACCATTAGCAATAAGCAAATTAATGAGAAGAATCTATCCCAACAAATAATTTTACTATTTCAAATATATATTACTTTTTCTTTTAGAAAAATATCATATACTCGTTATCAATCTTATAATCATTTGGTCACGGTTGTACTAAACTCTTACTATCAATTTTTTCTTACTTCTTTCATGATTATTTCTTTTTTTTTTTAAATTCTTAAGATTTACCAACAGAGATACATGTTTCTACCAAGAATCGCTTAGTATATTTCGATTAAATTGCATGCCCACGAATCACATGCTGAATGCATTTATTTTTTTATTATCGGCACTTCATATTTTCATATATTACTATTGGAAAAAATAAACAATTATGTGGATCTAATAGTCCAATTAGCTGGTATCTTGTCAACACAAGAAAGAATCTTTCCAGAAGAATGGCCAAAATAGCAAACTACGAATGGATACAAAAGGATATATAAATGCAGGATAAAATAATAAAGGAAAACAAATCAGTTCTTACAATCATAAGAACCAAACTTCAATTATCGTTTACCAATGATGAAAAGAAAATGAGTTGTTCCCCATAAGAGCACAAGAAGAAGCACAATTCAAAACATCAGGCCCATTATTTTACTTATGAAGGTACTTCGTCTGGGCTCGTTATGAAAAAAAAAACATTGATTAAGTACTAAATTATACACTGGGCTTCATATAATCCAAAAATCCGTTATGTTGTGATTATGAATTAGTGACAGAATCCTAACTATCTAGGAATAATGTTTGGAAAAGAGTTTTACTAATTAAGAAATCAAACAATGCAAATGGAAAGCAATAAATGGAAGGAACTTCTGAGATTAACATTACATGGGTGTGGTTTCGAGAAATAATCTCTTTACATCGGTTAATTTCAGATATACTTTAATGATTTGATTTATAACTATAGATGATGACGAACTACCAGTAAAATTGATTAGCATCAGTATTTTTAATAAACGACAAAATCCGATATTTCATGCATCTTGATCAAAATTCGGTGCATCTTGCATTTAAAGAAGTTTTTATAACTTACCAAATAATTAAAATTTGATTATTAATATTTATTTACTAGTTTTAGTATATTATTAATTAAAATTTCACATTTCCTTTTCTGCTTTCCACTTTAATTTTTCCACGTCGGCCCTTGCTATATCTCCATTTAAGACCTACACTACCTCTTAATTGTTTTTCTTTAAACATTCTTCCACTTACATTTTATATATTACACAAAACCCCTTGGTTGTACGAGATCGTTATATAAACGTTAAAAAATGGAGGGTTACGTGCAATTTCCAGAAACATATATTCTTTCATCTTTATCTCTCTTTTTCCTATTTAGTATAGATTTGTTATGATCTATATATAAAGTTTAGAGCCAAAAAAGTGCATTTGATAAAAGAAGCATCATCACCCCATCCAAGACATAACCA


Gene Sequence:
>Vu_21097(+)
ATGGCTAGGAGAAAGAAAGTGACACTAAAACTGATTGAGAATTTTGTGGCAAGAAAAGCTCGTTACAGAAAAATTCGAGAAAATTTATTGAAGAAGGTGGAAGATGTTACGACCCTTTGTGATGTGAATGCATGTGCAATCATCTATGGTCCAGGGGACGACGTGCCAACCGTGTGGCCATCCCATGATATTGCTAAAGAGTTGCTCGACAAGTTTGAGAATGCTCCATTGCCAGAACGATTGAAAAAAAATGTTACTCCACAACTTTATATCGACCAGATGAACAGAAAGATTGAAAAACAAGTCATGAAACTGAAGAAGAAGAACGATGAGAAAGACATGTCAAATTTCTTGCACAATATACATGACGGTAAGTCTTTATCAGATCTTGATGCTAGCGATATATGTCGTTTACTTTGTTACGTGGAGGGAAAATTGAAGTGTGCTGGAGTAAAAGTTCACATTTCTGAACAACAGTTATCAACTAAAACTCCGACACCACTAGTTTCTTTTCCTCTGCAGAATGACATCGATTCTTGTGCTAACATAGATGAACAGGTTTTTCAACAACAATCATCCTTAGATTCAACGAAAGAAACTGGTCCAATGAATAGTGATTCCGATAATAATAAGAATACGGGACTACCACCACTACAGCAACACGCACATGATAATACGGGGTTGTCTCAAGTTAATTTTGAAAGTTTGAATTTGGATGATATTGGTATGGTGTTACATTCAGCAAATTTTAATGATGTGATTGATGATAATGGCTTGGCATTTGGGATGTTGGCTCAAGATAATTATATAGGTATTTGTGATAATGGTGATTTAGGGCTTTTACATGGGAGTTCTTCAGGTGGAGAAATTACAGGCAATGACATATGGTCATCTTATGAAAGTTTTGGAGACATAAGTGAGAGTGATACCATGTTGCCCTTCAACAATAATGTTCAAGACAACATTGATGGAACTTTCATGGGAGCAAACGTTGAAAATGAAGGTGTCTCCATTAATAATATAGAGTTAAGCGGTGATCAAAGAACTACCAGTGGAGACACTTGA