Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_21090	LG5	30073306	30074097	PREDICTED: dof zinc finger protein DOF3.5	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	30073756	synonymous_variant	p.Lys114Lys
T/G	30073799	missense_variant	p.Asn100Thr
C/A	30074083	missense_variant	p.Trp5Cys

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_21090.1

MERGWKANSVEISPNCPRCGSSNTKFCYYNNYSSTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRGKYNKALRQAHGPVGHSDDLRPSSSVVSDGPNIDLAQVYASFLNVKPDQVQTVCSPSPEYSSIVNTDFGHSVLSEEHHGLTGRLHFHEQPRESHFGEDIEMYFCGLNSIQKHQEYSSSHDTTVTKTNFELPPLPGEVAETSHGNVLWSNSEMMVDHALQATQWPLLGPEAYDADFLMGNCWSHFDFPRDASFSMP*

CDS Sequence:
>Vu_21090.1

ATGGAGAGAGGGTGGAAGGCTAACAGTGTTGAGATTTCACCAAATTGTCCCAGGTGTGGTTCTTCCAACACCAAGTTCTGCTATTACAATAACTACAGTTCAACTCAACCACGGTACTTTTGCAAGGGCTGCAGAAGGTACTGGACCAAAGGAGGATCCCTCCGCAACGTACCAATTGGTGGTGGCTGCCGGAAAAGTAGAAGGGGTAAATATAATAAGGCCCTAAGACAAGCCCATGGCCCAGTTGGGCATTCTGATGATTTAAGGCCTTCATCTTCAGTGGTGTCTGATGGGCCAAATATTGATCTTGCGCAAGTCTATGCAAGTTTTCTCAATGTGAAGCCAGATCAAGTGCAAACAGTTTGCTCTCCTTCTCCTGAGTATTCAAGCATAGTTAACACTGATTTTGGCCACAGTGTTTTGTCTGAAGAGCATCATGGTCTTACTGGGCGTTTGCATTTTCATGAACAGCCCAGAGAATCCCATTTTGGTGAGGATATCGAAATGTACTTTTGCGGGTTGAACTCTATCCAGAAGCATCAGGAGTATAGTAGCAGTCATGATACAACGGTTACAAAAACAAATTTTGAGTTGCCTCCATTACCAGGTGAAGTTGCAGAAACCTCACATGGCAATGTGTTGTGGTCCAATTCTGAGATGATGGTAGATCATGCTTTGCAAGCCACCCAATGGCCCCTTCTTGGACCAGAAGCTTATGATGCAGACTTCTTAATGGGTAACTGTTGGAGCCACTTCGATTTTCCAAGGGATGCTTCTTTTTCCATGCCTTGA

Promoter Sequence:
>Vu_21090::LG5:30074097-30076097(-)

AGATATTGGTTTAAATCAGTGATGTTTAATTTTTGAGTAATAGTACCATGATATATTTTTACATTCATTTGATATAGGATATAAGAGTAAAATGATCATAAAAAAAGTAAAATTTTATATTTTTTCAAAAAAAAAAAGAAAATAAAAAATAAATAAAGATAGTATCATATGAAAGTAAAATATTCAAGTGTCAAATAATATATTTTTTTTATTTTTTTAGACATTTAAAAAAGTCAATTAAAAAGAATATTATCATAGAATTTGACATAAAAAAATCAAAGTATCCACATCAGAATAACATTAAATCATTAAAAAAACTCTTCTTAAAAATACCATTCCTAAAAACCCAATTGACCGACATAATAGCTTCTTTTTCCCTATTACCAATCTTCGCACTATTTTTTTTCTCACCAGATCCAAACAATTTAATAGTTTTTTTCTTTTTTAGAAAAAAAAAATACTCTTTTGATGTTTGCATGCATTTTCTTTTCTGTTACCGTGATTTTTATACATTAGTCATTGTTTAACTAAGTTAATAATGGGAAAGATTAAAACAAGAAAAGAAAAAGAAAACATGAGTTAGGTTTGTATTGTGATAGAGTGTCATTTATAATTCATTGATATACTATAGTACAGTTTTTTAAAAGTTTTGCATGATCCGAGAAGCTCAAGATCCAACCAATAACAATTAATAACGACCGCTCATTAGTACTATCGTGAAAGAGACATTCTTTGTGCAGAAAATGCAAAATCAAATTAATCCCATGTGCTCATTTCTTAAAGAACAGTCAAACAATTAGCGTACTGTGCTTTTTAGGTTGACATAACTTACAACTTTGAACTGCAATATTGACGGAAGAAATGGTTTATGTTAAAAGAAAGAAGAAGCGTGAACCACTTCGTCCATCAGAGCTTCATAGCAAAAACTCTCCTCCCAAGTTTCTTAACTCTTCATTATTGTACATAACTTACCAGAGTTTGAAATGAATGAAAACAGAATGCATTTTTAGTTAATTTATTGCATAACAGTCAAGTTTGTTTTAAATTCTAGTTCTAATTAGATGTTCCTAAAATTCTCCATAACAGATATATCAGTTTTAATTTGTCACAAATTATTGATAAGAAGCGTACAAATTAAGCCAAAGTCGACACCAGTTTGAAAAGAAACCAAGTGAAACCCATAGCTATCCCAAAATTCACGCCAAAAAAACTATTAACTTTACTCAGCGCACGAGGGAACTGAACAATGATTAGTAGGCCTTCTTAAAAAAACAGTAGTATCAAGTGATTTCCTTTTTCTTCATCGTTGAAGATGCATGATCAGAGAACTTATATTAAGTTGATTCGAGCGAAACAATATGTTCAGCAAAGGATTTGAGTTTATGTAAATGAAAACAAAAACAAAAACTGATTAGGAAAAATAACCACTCAGGTTTTCTGATAATCATATTACGTACTAATTATAACATAATTAGCAAAAATGAAATGTGTATGTGTGAGTAAAGTACAAAGTTTTAAGGGATGAGGGAAAGATTGAGGTTGGGATGTTAAACTTTTGTTGTGGGATCTGCTTCTAATATATGTGAGTTGTTGATTGCTGAAAGAAGAAACCTGAAATTATTCTACCGAGGGTTTTGCTTCCGCTATCACTCATCTCCACCAATGCAAACATCCCACGTAGGGTTAACACCGACACCAGGCATTAGCCTGCGGAGCAGTGACACCACCTGGCCTAACTTGCCCCATGCATGTTCATGTGCATGGCCGCATATACAATTCCAAGATCATATCCAAAGGCCACTCTCACGTGCATTATTATAAAACGAACTTCACCTTTACACTCAACGTGCTTTATAGGAGTTCAAACCCTCACCATCACACATAATCTTCTATAATCAATTCAAGTCTTCCTCCTCTCTCTCTCTCTCTCTTACACACACACCACACACAAAGTATACAAACAAACCATCGAGAGGGAAATGCATTGATTGTGAGTGGTG

Gene Sequence:

>Vu_21090(-)