Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20981 LG5 29008073 29010169 PREDICTED: heat stress transcription factor A-3
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, cellular response to heat, response to heat, regulation of transcription by RNA polymerase II, cellular response to heat, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to heat, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, cellular response to heat
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 29008104 missense_variant p.Leu11Pro
T/C 29008107 missense_variant p.Val12Ala
T/C 29008274 missense_variant p.Ser68Pro
T/A 29008276 synonymous_variant p.Ser68Ser
T/A 29008291 synonymous_variant p.Pro73Pro
G/T 29008327 missense_variant p.Leu85Phe
C/T 29008345 synonymous_variant p.Cys91Cys
G/T 29008360 synonymous_variant p.Pro96Pro
C/A 29008486 synonymous_variant p.Val138Val
T/A 29008487 missense_variant p.Leu139Met
G/T 29008494 missense_variant p.Arg141Met
G/T 29008578 intron_variant
C/T 29008583 intron_variant
T/A 29008635 intron_variant
G/A 29008637 intron_variant
T/A 29008655 intron_variant
T/A 29008656 intron_variant
G/T 29008809 intron_variant
T/G 29008821 intron_variant
A/C 29008823 intron_variant
C/T 29008834 intron_variant
G/T 29008842 intron_variant
A/G 29008844 intron_variant
A/T 29009391 missense_variant p.Gln302Leu
T/C 29009726 missense_variant p.Ser414Pro
C/A 29009789 missense_variant p.Pro435Thr
T/C 29009975 synonymous_variant p.Leu497Leu
A/G 29009982 missense_variant p.Glu499Gly
G/A 29010024 missense_variant p.Ser513Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20981.1
MNPRQQSHPQLVPEAPIGFSTTLLRSPEAFPSCSFPRYTSASLPPPDIALSASLPSSSSQPQSSTPSSSSKFPSSTAEFEKVITLPHPLECLQGNPVPAFLSKTFDLVDDPSLDPIISWSSAGVSFVVWDPTLFAIHVLPRNFKHNNFSSFVRQLNTYVDVKNRTGSRRNVAIVGISSSAGSVPRFLFCAASHNLLYQRDITLCLCKACFEFSQIANSNTASFAPNGFRKIDSDKWEFFNEAFQRGKRYLLKSIQRRRHPHPHQVGRHIVHWSDAGKAGLEFDIERLGKERSVLMQEVFELRQQQRTTLHRARQVNQRLQSAEVIHKQMLSFLARLLENPALLTCLQHEKEQRDVESPKVRRRFVKQHQERTGISDFLKEGQIVSYQPDRRNVTISSKIPEMCPTSLGGCSNYLSHDLAKELSEGAENLVSDGLAPLHEVMPTSDTIGLKSSSFGLEDTLLKGKTVMSSNQEDLLAEEIVSFPEDLTNEAGFPEFSPLVETESIIKPEDKWNTSFHFSGAPPATNHEGQEFRFISGMSDIWDTCSLWATQSFRTDDPALDE*


CDS Sequence:
>Vu_20981.1
ATGAACCCAAGACAACAAAGTCATCCTCAACTTGTACCAGAGGCACCAATTGGCTTCTCCACCACTCTCTTGCGTTCTCCTGAAGCATTCCCATCATGCTCTTTTCCTCGTTACACTTCAGCTTCTCTTCCACCACCTGACATTGCTCTTTCTGCCTCTCTCCCTTCCTCTTCCTCTCAACCACAGTCTTCCACTCCTTCTTCTTCTTCCAAGTTCCCTTCATCAACAGCAGAGTTTGAGAAGGTAATTACTTTGCCGCATCCCCTTGAATGCTTACAAGGGAATCCGGTTCCGGCATTCTTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCATATCATGGTCCTCCGCTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACTTATGTGGATGTTAAAAATAGAACTGGCAGCAGAAGGAATGTTGCTATAGTAGGGATTTCATCCTCAGCAGGTAGTGTTCCACGCTTCCTTTTCTGTGCTGCCAGCCACAACTTGCTTTATCAGCGTGATATTACCTTGTGTTTGTGTAAAGCTTGTTTTGAATTTTCACAGATTGCAAATTCCAACACAGCTTCATTTGCTCCTAATGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAATGAAGCTTTTCAGCGAGGGAAGAGATATCTTCTGAAGAGCATCCAAAGGCGCAGGCATCCTCATCCCCATCAAGTTGGTAGGCATATCGTGCATTGGTCTGATGCAGGTAAGGCTGGGCTTGAATTTGATATAGAAAGACTAGGGAAGGAGAGGAGTGTGTTAATGCAAGAGGTATTTGAGTTGAGGCAACAGCAGAGAACAACACTTCACCGTGCTAGACAAGTGAATCAGAGGCTCCAATCTGCAGAGGTGATACACAAACAGATGCTTTCTTTCCTGGCAAGGTTACTTGAAAACCCTGCGTTGTTAACATGCCTTCAGCATGAGAAAGAACAAAGAGATGTAGAATCTCCTAAAGTGAGAAGGAGGTTTGTCAAGCAGCACCAAGAACGAACAGGAATATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTTACCAACCTGATCGGAGAAATGTAACCATCTCTTCCAAAATACCAGAAATGTGTCCAACTTCCCTTGGAGGGTGTTCAAATTATCTTTCACATGATTTGGCAAAAGAATTGAGTGAAGGTGCTGAGAATCTGGTGTCAGATGGATTGGCCCCCTTGCACGAGGTTATGCCAACTTCTGACACCATTGGGTTAAAGTCATCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGGAAAACTGTCATGAGCTCAAATCAAGAAGATCTTCTTGCAGAGGAGATTGTTTCTTTCCCAGAGGATTTGACTAATGAGGCTGGATTTCCAGAGTTTTCACCTTTAGTTGAAACAGAAAGCATTATCAAGCCAGAAGATAAATGGAACACCAGCTTTCATTTCAGTGGCGCTCCCCCAGCTACCAACCATGAAGGACAAGAATTTAGATTCATTAGTGGTATGTCAGACATCTGGGATACTTGTTCACTGTGGGCAACACAGAGTTTCCGAACTGATGATCCAGCACTGGATGAATGA


Promoter Sequence:
>Vu_20981::LG5:29006073-29008073(+)
GAGCCTCTTCCAGCAATTCCTTCTTCTAAAGCAAACCTGACATTTCCTTCTTCATTGACTTACACGTTTTTTAGCTTACTTAGGTTTTGCCCAATTCAAAAAAGAATTTACTTGGATTCATAGTTGTTAAGTAAACATTTTCATTTGAGAGGGTTTGTTGGTGCTTCTTTTACTTAAAGGGGTGGTTCAATATAAAATAATAGATAGATTTGTTAGATAAAGATATAACTAAGCTAAACTTCAGGTTACAAGTTGTGTTTATAGGATCAAGTTATACTTGTTCACATCTAAAGAGTAGTCAGTCATAAAACTATCACTCCATTAGTGCTAGTAAGGTGGATGGAGCACACACTTGGATGGTTTTGAGGAATCGAATGAGTTTAAAAGCACTTGATTTTCTTTACTCCATTTGGACGATTCACTTGACTAGAGCAGGAGTAATTTACTTTCTTTGCCCAGTCATATATTGAAGTGTAGTTGTAATACAGTTTAATTTAATTAGGAGTTGGAAAATGGTGGGTTTAAGGGGTTGGTGTTAAACGCTATTTGTCTTTGCTTCATGGTTGTTGCTTGTATAAGTTAGCCATGTTGTAGTTCTATGATCAAACTAATATTCGTCCGTGTTTCAGTTACAGAGGCGCAGTTGTACATTTCTGTTCAAATTCGGATTCAGAATACCCAATTTCGACACAAAGCCATACTCCATCTTTAACGCAGCAAATATTATTTGGTTATGTACTCCAGTAATTTTATGAATAAAATGTATAATGTTTTCATCCATAAAATTTTGTTTTGTAAAATTATTCTCATTGTAACTATATTAGTTAATGATAAGCGACTTTAACCGAATGGGGAGCGTGTTTTTCATCCCTCTCCCAATTTCCTTGTCTTTTGGAACTAAATAAACCATATAAAACAGTAGGTTTTCTACTGGTTTGCATTCAATGTCTAAGTTGTAGATAAAATTCTTTGGAAGAACTTCTAAAAAAAAAGAAATAATTTATTTCATAGTTAATGTTGGTTTATGTAAGTATTGATTTGTAATTTTTTTCATAGTTTATTATTATTTTTAATATAAATAATCTAATTTTAATCTATGAAGGTATGTTTTTTAAAAAGTTTTTATTAAAAAAAAACATCCATGGAATATTAAATCAACTCCATCTACGTCACTGAAATTCTTTGTATTGAGCAAAAGTTCTTTAGACAGCCTCTTTTAGGTCATAAATGTTTTTAATACAAGCAAACTACAAAACAAAGGCTAAATCAATGGCTTATTTATTGAATTTTATTCAATTTGATGCATTTACTATTACAAGTTTAATTTAATATCTCTTTTTTAAATTCTAGTATTTCTGAAAGAATATCAATGACAGAAAATTGTACAAAATCATCTAATAAAAAGAATATATGTTTCATCCTTTGTAGCTAACCTAATACATAATTAATCACTTAACGAAAATAGTAAACAATAAATATCAAAATTAAAAATAAAAATTTATAAAGGAGTAAACAAAAAAAATGGAGTATCTTAAATAAGATATAATTTTACGATAAACTACAAAAATTATCTAAGACTAGCATTAAGTTATTTTGTTGAAGTTGATTTTTAAATGTTGGAATGAAATTAAAAAAAAAATACTTAGAATAAATGAATCAAAGTTGAAAGCATTGATTAATAGGAGCACCCAACAGAATCAATAGAGACGTGGTGGCAGAAAATCTAAAATGAAGTTTAGTACAGGATTTAGAGCAGTATTCCATGATTGGTTACTGCAGTTAACTTGGGTTGAAAGTATGAGACCACACTGTCTGAGTGACCACAATCTCTCTTTCTGTCGCTTTTCAGCTTATAAATCATTGGGTGACTGCGGCAAAAATATCTAGTCCCCTCTCCAATCCCAATGCTCACTGCTCCCACCGCCTTTCCACCATTTATAAACCACTCACCCTTCTTACTCTTTCTATTTTCACTTCAACCATTTTCCCACCACAAACTA


Gene Sequence:
>Vu_20981(+)
ATGAACCCAAGACAACAAAGTCATCCTCAACTTGTACCAGAGGCACCAATTGGCTTCTCCACCACTCTCTTGCGTTCTCCTGAAGCATTCCCATCATGCTCTTTTCCTCGTTACACTTCAGCTTCTCTTCCACCACCTGACATTGCTCTTTCTGCCTCTCTCCCTTCCTCTTCCTCTCAACCACAGTCTTCCACTCCTTCTTCTTCTTCCAAGTTCCCTTCATCAACAGCAGAGTTTGAGAAGGTAATTACTTTGCCGCATCCCCTTGAATGCTTACAAGGGAATCCGGTTCCGGCATTCTTATCCAAGACTTTCGACCTCGTTGACGATCCATCGTTGGATCCGATCATATCATGGTCCTCCGCTGGTGTTAGTTTCGTGGTGTGGGATCCTACCCTGTTTGCAATACATGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACTTATGTGGGTACCCTATGTATTTTATGTTTGTACTGTAACCGGTTTGATTTAGATCAACCATGTCATATGTATTTGGTTTTGGGACATTGTTTTGTCAACTGGGAGTTGATTTTTTCGAAGTTTTGTATCCGAAGTTTCTCTACATGTTTTATGTATTATGTATCTAACTTTGGAATGATTGGACGTGTTTCTGCAGGTGGAGTGAGTAATTTGTTATTTGTGTTTTCTTATTTGCCACTTAATAAAAGTGAACCTCCATGTTATGGACTTTTCTATGTTAATTCCTATTACTACTGGTGGAGCTGTGTGATAATAATAATAATATGGTTCAGATGTTAAAAATAGAACTGGCAGCAGAAGGAATGTTGCTATAGTAGGGATTTCATCCTCAGCAGGTAGTGTTCCACGCTTCCTTTTCTGTGCTGCCAGCCACAACTTGCTTTATCAGCGTGATATTACCTTGTGTTTGTGTAAAGCTTGTTTTGAATTTTCACAGATTGCAAATTCCAACACAGCTTCATTTGCTCCTAATGTCTTAAACTCCGGTGTGTCTAAACCAAAATTTATTTTCCTTGGTTTGCTCCATTCGTTCTCAAGTCACTTGACATTTGTATCCAGGGATTCCGCAAGATTGACTCTGATAAGTGGGAGTTTTTTAATGAAGCTTTTCAGCGAGGGAAGAGATATCTTCTGAAGAGCATCCAAAGGCGCAGGCATCCTCATCCCCATCAAGTTGGTAGGCATATCGTGCATTGGTCTGATGCAGGTAAGGCTGGGCTTGAATTTGATATAGAAAGACTAGGGAAGGAGAGGAGTGTGTTAATGCAAGAGGTATTTGAGTTGAGGCAACAGCAGAGAACAACACTTCACCGTGCTAGACAAGTGAATCAGAGGCTCCAATCTGCAGAGGTGATACACAAACAGATGCTTTCTTTCCTGGCAAGGTTACTTGAAAACCCTGCGTTGTTAACATGCCTTCAGCATGAGAAAGAACAAAGAGATGTAGAATCTCCTAAAGTGAGAAGGAGGTTTGTCAAGCAGCACCAAGAACGAACAGGAATATCAGATTTTTTGAAGGAAGGACAGATTGTAAGTTACCAACCTGATCGGAGAAATGTAACCATCTCTTCCAAAATACCAGAAATGTGTCCAACTTCCCTTGGAGGGTGTTCAAATTATCTTTCACATGATTTGGCAAAAGAATTGAGTGAAGGTGCTGAGAATCTGGTGTCAGATGGATTGGCCCCCTTGCACGAGGTTATGCCAACTTCTGACACCATTGGGTTAAAGTCATCAAGCTTTGGACTTGAAGATACCCTTTTGAAAGGGAAAACTGTCATGAGCTCAAATCAAGAAGATCTTCTTGCAGAGGAGATTGTTTCTTTCCCAGAGGATTTGACTAATGAGGCTGGATTTCCAGAGTTTTCACCTTTAGTTGAAACAGAAAGCATTATCAAGCCAGAAGATAAATGGAACACCAGCTTTCATTTCAGTGGCGCTCCCCCAGCTACCAACCATGAAGGACAAGAATTTAGATTCATTAGTGGTATGTCAGACATCTGGGATACTTGTTCACTGTGGGCAACACAGAGTTTCCGAACTGATGATCCAGCACTGGATGAATGA