Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20961 LG5 28728437 28730560 PREDICTED: leucine-rich repeat receptor-like protein kinase PXC1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, plant-type secondary cell wall biogenesis, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   located in   plasma membrane, plasma membrane, plasma membrane
Molecular Function   enables   protein kinase activity, protein kinase activity, kinase activity, protein kinase activity
SNP Position Effect Amino acid change
T/A 28728561 synonymous_variant p.Gly641Gly
C/T 28729016 missense_variant p.Val490Ile
G/C 28729071 missense_variant p.Asn471Lys
A/C 28729193 splice_donor_variant&intron_variant
C/T 28729194 splice_donor_variant&intron_variant
C/T 28729549 missense_variant p.Asp338Asn
C/A 28729649 synonymous_variant p.Gly304Gly
A/T 28729680 missense_variant p.Phe294Tyr
G/T 28729696 missense_variant p.Leu289Ile
G/T 28729713 missense_variant p.Ala283Glu
A/G 28729721 synonymous_variant p.Ile280Ile
C/T 28729835 synonymous_variant p.Thr242Thr
C/G 28729936 missense_variant p.Asp209His
A/G 28730224 missense_variant p.Tyr113His
A/C 28730227 missense_variant p.Phe112Val
A/C 28730357 missense_variant p.Asp68Glu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20961.1
MKHPSSINLSLPLLPLALAFTIFCVAESAWQNDTLALTQFRLQTDTHGNLLSNWTGADACSAAWLGVDCSPNGRVVGLSLPSLNLRGPIDSLSSLVYLRFLDLHENRLNGTFYPLLNCTALELLYLSHNDFSGEIPRQISSLRLLLRLDISDNNIRGPIPNQVAKLTHLLTLRLQNNALSGHVPDISASLLNLTQLNVTNNELRGHVPDSMLSKFGNTSFSGNHGLCGSTPLPKCSEIEPDTETTITVPSKPSSFPQTSSVTLSDTPKKKGLRAGVIVAIVVAVCVAVLVAISFVVAHCCARGGGGYGSAAGSESGKRKSGSSSGSEKKVYGNGGNFDRDSDGTNTETERSKLVFFDRRNQFELEDLLRASAEMLGKGCLGTVYRAVLDDGCTVAVKRLKDANPCERNEFEQYMDVVGKLKHPNIVRLRAYYYAKEEKLLVYDYLPNGSLHALLHGNRGPGRIPLDWTTRITLVLGAARGLARIHAEYNASKIPHGNVKSSNVLLDKNGVALISDFGLSLLLNPVHAIARLGGYRAPEQVEVKRLSQEADVYAFGVLVLEVLTGRAPSTEYPSSAARPRVEDEGEVDLPKWVRSVVKEEWTAEVFDEELLRYKNIEEELVAMLHVGVACVAAQPEKRPSMMEVVKMVEDLRVEQSPLGEDYDEARSRNSLSPSLPTTEDGLA*


CDS Sequence:
>Vu_20961.1
ATGAAACACCCTTCTTCCATAAACCTGTCACTGCCATTGTTGCCATTGGCATTGGCCTTCACCATCTTCTGTGTTGCAGAGAGTGCATGGCAAAATGATACACTCGCCCTTACCCAATTCCGCCTCCAAACCGACACCCACGGCAACCTTCTCTCCAACTGGACCGGAGCCGACGCCTGCTCCGCCGCGTGGCTCGGCGTCGATTGCTCCCCAAACGGCAGAGTGGTGGGCCTCTCCCTCCCTTCCCTCAACCTCCGTGGTCCAATTGATTCTCTCTCCTCACTGGTGTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCTTTTACCCCCTCTTAAACTGCACCGCCCTCGAACTCCTCTATCTCTCCCACAATGACTTCTCCGGCGAGATTCCGCGGCAGATATCTTCCCTCCGCCTCCTTCTCCGTCTTGACATCTCCGACAACAACATCCGCGGTCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTTCTCACTCTTCGGTTGCAGAACAACGCCCTGTCCGGCCACGTCCCCGACATCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCTATGCTTTCAAAATTCGGCAACACCAGCTTCTCCGGAAACCATGGTCTATGTGGGTCCACCCCGTTGCCCAAATGTTCCGAAATCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGTTCGTTCCCTCAAACAAGCAGTGTGACTCTCTCTGACACTCCGAAGAAGAAAGGTCTGAGGGCGGGTGTCATTGTGGCCATTGTAGTGGCGGTTTGCGTGGCGGTGCTAGTGGCGATTTCATTTGTGGTGGCGCACTGCTGCGCGAGGGGAGGGGGAGGCTATGGATCGGCAGCGGGGAGCGAGAGTGGGAAACGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTTTATGGAAATGGTGGGAATTTCGATAGAGATAGCGATGGGACGAACACTGAGACGGAACGAAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCGGAGATGCTGGGAAAAGGGTGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGCTGCACCGTCGCAGTGAAGAGACTGAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTCAAACACCCCAACATTGTCAGACTCCGAGCCTATTACTATGCAAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCCAATGGAAGCTTGCATGCTCTTCTTCATGGTAACCGTGGACCTGGAAGGATTCCATTGGATTGGACAACGAGAATAACCTTGGTGTTAGGTGCGGCCAGAGGGTTGGCTAGGATTCATGCAGAGTACAACGCGTCCAAGATACCCCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGCGTCGCTTTGATCTCCGACTTCGGGTTATCGCTGCTGTTGAACCCGGTTCACGCGATCGCGCGGTTGGGAGGGTATAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTATTGGAGGTGTTGACTGGAAGGGCGCCGTCCACTGAGTACCCTAGTTCCGCGGCGCGTCCACGCGTGGAGGATGAGGGTGAGGTGGATCTTCCGAAGTGGGTTCGGTCGGTGGTGAAGGAGGAATGGACTGCTGAGGTGTTCGACGAGGAGTTGTTGCGGTACAAGAACATCGAGGAGGAGTTGGTGGCGATGTTGCACGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGATGGAGGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCTCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCGCCGTCGCTTCCAACCACCGAAGATGGCCTTGCTTAA


Promoter Sequence:
>Vu_20961::LG5:28730560-28732560(-)
CAGTTTTTGGGGTCTCTATTCCCACAGTAGATGTATTCCCTGTCATATATATATATATATATATATATATGCATATGTATATGTATATGCCTGTGTAAACTACAAAATACTGTGGCCAAAATGCTAAAAGAGACCTTGCAGACTAAAATTTAAGCTTTGCCTTTTTTATCTAGAGTTAAAGTTGTTAAATTTCAGATTCTGTTATTTGCCCCATTTTCCAATGATAAACTAATAGAAAAAGTGTGTTAATTAAGAAAATGTTAAGAGTACCTTTAGTTTTGGAGCGCCAATCTCGGCTTCAAACTCTTCTTTTTGAAGGCTTTTGCTTTAGAGGGTAATGAAGAGTGAAAGAGAGAAAAGCTGAAATAATTCCCTCACTTTTTGGGACAACTTACATTAGCAGAATGGTGGAAACTCTTCCGAAGGTTTCCAATGGAGATGGGAAGCAATCACAGTGTACCATCCATTGCCCCCACCCATGTGCCATTTACCCATCACACCATCATCTTATATCATCAATCATCAAATTATAAAATAAATATAAAAGTAAGGTTAAATATGCTTTTTGTCATTCCTCAAATAAGAAGAATAAAGCTGTGAAATGAAAAGTAATCAGATTATAAAAAAATGGAAACGGAAAGAAAAAGAAGTAATTGGTTGGGCTGGGTTTGTACTGTTGTGGGAACCGACAATTTCACATATCAAAGTGATTGGAACGATGGTGTACTATATTTGGTGTGTTTTGACTAGCTTGGTCAACTTTTGTCGTGAAACTAAAGCTTTAATTCCAGTCATGTCCCTGGCATTTTCATCTTTATCATTCAATTCTATGCCTCACTTGAGGGTGATGTGAGAAAAACTTTGCTTGTTTATGACTTAAAGCAGAGGACCCTTCTTTTCTTCCTCAACATGGAAAAAGTAGCAGCTGTGACCAAACCAAATAATGAGCACTTTCTTCTGGTCACAAACACATATGTTTGTACATGCATATATAAAATTAATTATGTTAATTATTATTATGAGTAACACTTTTTACTCATTCAAGGAAATCAAAGAACATCTCTCGTATTAAACTCTGTTTATCCGATAAAAAACATCTTTAAGAAATTATCATGAGAGGGATGAACCCTTCTAAAGTTGCACATGTTAATTGCATCCATTGTCAACACACAATGGTCCACACCTCAACAAACCTTGTGTAAAAACTGAGGAAGTCAATTCTTGAGAAGGGTTAGTGGTATTATTATCCTGTTGATGATATATACGTAGGAAGAGGAGAATAAAACAGAATAAAAGTAGCAGAGGAATCAAACACAATTATTTAGGATGAGTTGTTCTAGACTGGGTGATTGGCAACACTGAACCCATTTTACCCTTCCATAGTAACTCAACAAATTGACCTTTATGAAACCTTATTAGTAGCATCATTTCCATTATTTATTGAAAAATGACACTTGAACAACCATTTTTGACAACATTTAGACACGCGCACACGTGTCAAAATCTGAGTAGTCCAATTGGAAAAATTAAATGAAAATAGACCACTCAGATTTTGACACGTGTGCGCGTGTCTAAATGTTGTCAAATGGTTGTTCAAGTATCATTTTCCTTATTTATTATCACTATTACTATTCAACCTTGTCTGTATCACTATTAACATTGTACATTTGTCTGCAAAGGAACCATGTTTTCTTCTTCTCTTTAGCGTAATAAGCCAAGCAAAAGAAAAAAGCATTAATTAGGAACACCCTCCATATCTTGTGAGTAAGCGACAACAGCAATCATAAACGGTACCACCCTTTCCAAATCCCACAAACTTTAATCATCACATTAGTCCTAATTACCTCTCAAGGACTTATGATAACTGCAACACTTTTCTTCGATCACTCGCTCTCTCCAATCATGCCACGTTTTCCTTCTCACTCCATCTGAAATCCCAACCTTCTTTTCAAATTAAAAACACCAGCATAGCCATTCTTGCCCCCTTCCCACACCATAAC


Gene Sequence:
>Vu_20961(-)
ATGAAACACCCTTCTTCCATAAACCTGTCACTGCCATTGTTGCCATTGGCATTGGCCTTCACCATCTTCTGTGTTGCAGAGAGTGCATGGCAAAATGATACACTCGCCCTTACCCAATTCCGCCTCCAAACCGACACCCACGGCAACCTTCTCTCCAACTGGACCGGAGCCGACGCCTGCTCCGCCGCGTGGCTCGGCGTCGATTGCTCCCCAAACGGCAGAGTGGTGGGCCTCTCCCTCCCTTCCCTCAACCTCCGTGGTCCAATTGATTCTCTCTCCTCACTGGTGTACCTCCGCTTCCTCGACCTCCACGAAAACCGCTTAAACGGTACCTTTTACCCCCTCTTAAACTGCACCGCCCTCGAACTCCTCTATCTCTCCCACAATGACTTCTCCGGCGAGATTCCGCGGCAGATATCTTCCCTCCGCCTCCTTCTCCGTCTTGACATCTCCGACAACAACATCCGCGGTCCAATCCCCAACCAAGTCGCCAAACTAACCCACCTTCTCACTCTTCGGTTGCAGAACAACGCCCTGTCCGGCCACGTCCCCGACATCTCCGCTTCCCTCCTCAACCTCACCCAACTCAACGTAACCAACAATGAACTTCGTGGCCACGTTCCCGATTCTATGCTTTCAAAATTCGGCAACACCAGCTTCTCCGGAAACCATGGTCTATGTGGGTCCACCCCGTTGCCCAAATGTTCCGAAATCGAACCAGACACGGAGACCACAATAACCGTTCCTTCAAAACCGAGTTCGTTCCCTCAAACAAGCAGTGTGACTCTCTCTGACACTCCGAAGAAGAAAGGTCTGAGGGCGGGTGTCATTGTGGCCATTGTAGTGGCGGTTTGCGTGGCGGTGCTAGTGGCGATTTCATTTGTGGTGGCGCACTGCTGCGCGAGGGGAGGGGGAGGCTATGGATCGGCAGCGGGGAGCGAGAGTGGGAAACGGAAGAGTGGGAGTAGTTCTGGGAGCGAGAAGAAGGTTTATGGAAATGGTGGGAATTTCGATAGAGATAGCGATGGGACGAACACTGAGACGGAACGAAGCAAGCTGGTGTTTTTCGATAGGAGGAACCAGTTTGAGTTGGAGGATCTGCTTCGAGCATCGGCGGAGATGCTGGGAAAAGGGTGCTTGGGAACGGTTTACAGAGCGGTGCTCGACGATGGCTGCACCGTCGCAGTGAAGAGACTGAAAGACGCAAACCCCTGCGAGAGAAACGAGTTTGAACAGTACATGGACGTTGTAGGGAAGCTCAAACACCCCAACATTGTCAGACTCCGAGCCTATTACTATGCAAAGGAAGAAAAGCTTCTTGTGTATGATTATCTCCCCAATGGAAGCTTGCATGCTCTTCTTCATGGTTAGTTTATTCCTCTATTATACTGTACTTTATTAGGGTTAGTTGAAATTTAACGATTCGATGTTAATGAAATAGGTAACCGTGGACCTGGAAGGATTCCATTGGATTGGACAACGAGAATAACCTTGGTGTTAGGTGCGGCCAGAGGGTTGGCTAGGATTCATGCAGAGTACAACGCGTCCAAGATACCCCACGGGAACGTCAAATCCTCCAACGTGCTTCTCGACAAAAACGGCGTCGCTTTGATCTCCGACTTCGGGTTATCGCTGCTGTTGAACCCGGTTCACGCGATCGCGCGGTTGGGAGGGTATAGAGCGCCGGAACAGGTTGAAGTGAAGAGGCTGTCGCAGGAGGCTGACGTGTACGCTTTCGGGGTGTTGGTATTGGAGGTGTTGACTGGAAGGGCGCCGTCCACTGAGTACCCTAGTTCCGCGGCGCGTCCACGCGTGGAGGATGAGGGTGAGGTGGATCTTCCGAAGTGGGTTCGGTCGGTGGTGAAGGAGGAATGGACTGCTGAGGTGTTCGACGAGGAGTTGTTGCGGTACAAGAACATCGAGGAGGAGTTGGTGGCGATGTTGCACGTGGGAGTGGCGTGCGTGGCGGCGCAACCGGAGAAGAGGCCGAGTATGATGGAGGTTGTGAAGATGGTTGAGGATCTGAGGGTGGAACAGTCTCCTCTGGGAGAGGATTATGATGAGGCACGGTCACGCAATTCGCTTTCGCCGTCGCTTCCAACCACCGAAGATGGCCTTGCTTAA