Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20959 LG5 28713885 28715755 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular response to hypoxia, regulation of cellular response to hypoxia, regulation of transcription, DNA-templated, cellular response to hypoxia, cellular response to hypoxia, regulation of cellular response to hypoxia, regulation of cellular response to hypoxia, negative regulation of gene expression, regulation of cellular response to hypoxia, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cellular response to hypoxia
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
C/G 28714075 5_prime_UTR_variant
C/A 28714152 5_prime_UTR_variant
T/C 28714311 synonymous_variant p.Ser15Ser
G/C 28714315 missense_variant p.Gly17Arg
T/G 28714386 synonymous_variant p.Val40Val
T/C 28714673 missense_variant p.Val136Ala
A/G 28714680 synonymous_variant p.Gly138Gly
G/T 28714762 stop_gained p.Glu166*
G/T 28714893 missense_variant p.Glu209Asp
C/T 28715460 synonymous_variant p.Ser398Ser
A/C 28715461 missense_variant p.Lys399Gln
G/T 28715467 stop_gained p.Glu401*
G/A 28715635 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20959.1
MEPNALGGGIFPNISSGLLGVENLQNQQNPPHSLHHPQMVSYASHHDTDTHQQHPPQSIKHGYNYSVGKTNKLQITLSDEDEPGFTAEDSGDPKRKMSPWHRMKWTDTMVRLLIMAVYYIGDEAGSEGADPTKKKVTGLLQKKGKWKSVSRGMMEKGYYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDTMDLSPKMKEEVRKLLNSKHLFFREMCTYHNSCGHNNNCGTSNVQQSSEAQPQHQHQHQQQRCLHSSENGVGGLRMLKEDEEEDNEEEDSEDFSDEEEEESGEGASRGMEEDENDVMRKRARKGGFGGLSSSSSISSQAMMQQLNGEVSGVLQDVGKSAWEKKHWMKKRVVQLEEQQVSYQMQAFELEKQRLKWARFSSKKEREMERDKLQNQRRRLEIERMVLLIRQKELELVNVHQQQQHQQQHSST*


CDS Sequence:
>Vu_20959.1
ATGGAACCCAATGCATTAGGGGGTGGAATATTTCCTAACATAAGTAGCGGTTTGTTAGGAGTAGAAAACCTTCAAAACCAGCAAAACCCTCCACACTCTTTGCACCACCCCCAAATGGTTTCCTATGCTTCGCACCATGACACTGACACACATCAGCAACACCCACCACAATCAATCAAACATGGCTACAACTATTCCGTGGGTAAAACCAACAAGTTACAAATCACACTCAGTGATGAAGATGAGCCTGGGTTCACAGCAGAAGACTCCGGTGATCCCAAGAGAAAAATGTCTCCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGACTCTTAATAATGGCTGTTTATTACATTGGAGACGAGGCTGGTTCAGAAGGCGCTGATCCCACCAAGAAGAAAGTCACGGGATTGCTGCAGAAGAAAGGGAAATGGAAATCGGTGTCAAGGGGCATGATGGAAAAGGGGTACTATGTATCTCCCCAACAATGCGAAGACAAATTCAATGACTTGAATAAGAGGTACAAGAGGGTCAACGACATTCTGGGCAAGGGCACAGCTTGTCGGGTGGTGGAGAACCAAACATTGTTGGACACCATGGATCTGTCCCCAAAAATGAAGGAGGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTACCTATCACAACAGTTGTGGCCACAACAACAACTGTGGCACTTCGAACGTGCAACAATCAAGTGAGGCTCAACCACAACATCAACATCAACATCAACAGCAGCGGTGTTTGCATTCATCGGAGAACGGGGTGGGGGGTCTGAGAATGTTGAAAGAGGATGAGGAGGAGGATAATGAGGAAGAGGATTCGGAGGATTTTTCTGATGAGGAGGAAGAGGAATCGGGAGAAGGAGCATCAAGGGGTATGGAGGAGGATGAGAATGATGTGATGAGGAAGAGAGCGAGGAAAGGAGGGTTTGGTGGGTTGTCATCATCATCATCGATATCATCTCAGGCGATGATGCAGCAATTGAATGGCGAAGTGAGCGGTGTGTTGCAAGATGTGGGGAAGAGTGCATGGGAGAAAAAACATTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAATGCAGGCGTTTGAATTGGAAAAGCAACGGTTGAAGTGGGCCAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGATAAGCTTCAGAATCAACGGAGGAGGCTGGAAATAGAGAGAATGGTCTTGCTAATTCGCCAGAAGGAGCTTGAATTGGTTAATGTTCATCAACAGCAGCAGCATCAACAGCAGCATTCTTCTACCTAG


Promoter Sequence:
>Vu_20959::LG5:28711885-28713885(+)
CCGGAAAAAATGTGTGAAAATACAAGGGAAACAACATTTTAAATCTTGTATAAACTCAAATGGAACCTGGTGCAGTAGTTTATATTTTTTTTTTATCAAGATAAATATAATACAAGTTTCTCATCTTAAATTTATAAAAAGGTAACAAAGTTATGCTTAAAGATGAAAATAATTTATATTTTAGAATGACCAAACTGATTAAAACAAAAAAGACCAAAATAATTTTATAAATCAAAATTAAAATAAATCTCTCTTTTACTTGATGAAAATGTAGTTGTAATATTACTGTTATTTCTCTCTTGTTTTAACTTTTTACCCCTGAATGCTCGCACATCAAAAGATGATTTATTTTTATCCTAGTAAAGAAAATCCGTGAATTGGCATATTATAAAAAACTTGCCAATTGGAATTAATAAAGAAGAAAAGATAGCATTTGGATAAACTAAGAACTACAAAACCAGCGGCACCTCGTCGTGGTGCGCAACCGGTGCTGTTATTCGACCACTAATCTTAAAAAACAAGTTGAAAAGAGAGATATACATTTTTTAATGCCAGAGGAAATAATATATATATTTTTTAAGCTTTTTCCCCACTAGTAAAGTTACAAACTACTTTTTAAAGTTGCATCAGTAACAATTTGTAGTCTTTAAATACTCAGGACCTTCAGTTAACTTTATAAAAAATATTAATTACTTTAATATTTTTATGAAATGATATTACAAAATATATTCCTATCATAATTTCCATTGGAAATGTGTTTTTTTATACTAACAACACGTATATATTAGACTCATGAACTAATTTTAAAAATTGTAGAACCAAGTCATGAGAATTTGAAATTTTATGTTAACTTCTAATTTCGGAAAAGGTTGTAGACTTAATAACACATTTAGATTTTTAACTATTATAATGGAATAATTTTGGTCTTTTAGACTTTAATTAAACCATTTTTAATCTTTCACCTATCACAAGATTGTTCAGTTTAGATTCTTTAGAATTTTTTTTATTAAATATTGAATAAATTTTATTGTCACCTTACTAAATAATACCAGGATTGATGTTTTGATAAAGTTTAATTATATTTTTTTTATCGTTTATATCTATAACGTAAAAAAACAAAAAAATATAATTAAATTATATCAATAGGTATAAATTATAAAGTTAATAATACTATCAAAGAAATAGTTTCATGTTAACAAGTTTGTTAATAAAAACCTCCTCTATTACTAAACTTTTGGAATTTTCCTTTCACAATTAGAAAAAATAGACCATAATTGAATAATTAGTACGAGTAGACTCATTTATTGTTTATAACATGTTATAAACGAAACTAAAAAAATGTGCATTGACAGTGCATATTAATTTCTTTTGTAGTTTTAAAACACATTTTCAATGACATGAAAAAGATTAGTATGTATATATATATATATATATATATATATATATATATATATATATATATATATATTAATAATATATTAGTTGCTTTAAATTATACACAAGTGGGAAAAAAGTATGTAAATATAATACATAATATATATATTTTTGTTAGCAAATATATAATACATTATAAACTTAATGAGAAAAAAGCTAAAAGGAAAAATATTTAAACTAAAATAAATCATTGAAGATGTTATTAATTGTGATGACAGAAGAAAAAGTATTTATAAACTAAAGTTGAGAAAAAATTATGTTTGAGAGTTATAGAAAAGTGATATTTGTTTTGTTTTAGATCTCTGAATAGACTAATAATAAGCATAAACACTTATGCAGAATCTAGTGTCTGGTTTGAAACAAGAGTTTAAGTGGACGTGGACCAGCCCATTTAGCACAAAACCTGTGGGTTATGTTTTTCAAAGCGCCAACAAAACCATGGGCAGTTTTCTCTCACTGCTGTAGCATAACCAGCTGCTTCACCCTTTGTATTTTATCTCTATTATCTTATTACCATATGCTACATGTTATAATCTATATATCCATCATTCTCTTTCTTCCTTCTA


Gene Sequence:
>Vu_20959(+)
ACCCACCCATGCTTCTGCATAATCATCTTTCGTACAATACCATCTCGGCCCTTTTTTCTTTTCCTCTTCACCATTGACTTCTGCATAGTCTTTAAAATGCTGAGGAAAAATAACATGCACCAGGTCTTTGTGGAAGCACATTTCATTTCATTTTCTACACGCCAAGCGATTTATTGGTAAGGTGAACGTGCGTTATGATGTTGATTACACTACGTCGATCTAACTATTTCTCAAAACCTGAGTGCTTTAGTCAAATTTCTTTTCACCCCTTTTGAATTTTGAATTGTTCTAACTCCAATTTCATTGTAAATTTCCACAAATATTGAGTGGGATTGGTGATTTTCATAAATATCCGCAAACTGGTGTATATATTGAGGAGTTGATGGAACCCAATGCATTAGGGGGTGGAATATTTCCTAACATAAGTAGCGGTTTGTTAGGAGTAGAAAACCTTCAAAACCAGCAAAACCCTCCACACTCTTTGCACCACCCCCAAATGGTTTCCTATGCTTCGCACCATGACACTGACACACATCAGCAACACCCACCACAATCAATCAAACATGGCTACAACTATTCCGTGGGTAAAACCAACAAGTTACAAATCACACTCAGTGATGAAGATGAGCCTGGGTTCACAGCAGAAGACTCCGGTGATCCCAAGAGAAAAATGTCTCCATGGCATAGAATGAAGTGGACTGACACCATGGTAAGACTCTTAATAATGGCTGTTTATTACATTGGAGACGAGGCTGGTTCAGAAGGCGCTGATCCCACCAAGAAGAAAGTCACGGGATTGCTGCAGAAGAAAGGGAAATGGAAATCGGTGTCAAGGGGCATGATGGAAAAGGGGTACTATGTATCTCCCCAACAATGCGAAGACAAATTCAATGACTTGAATAAGAGGTACAAGAGGGTCAACGACATTCTGGGCAAGGGCACAGCTTGTCGGGTGGTGGAGAACCAAACATTGTTGGACACCATGGATCTGTCCCCAAAAATGAAGGAGGAAGTTCGAAAACTGCTCAACTCCAAGCACTTGTTCTTCAGGGAAATGTGTACCTATCACAACAGTTGTGGCCACAACAACAACTGTGGCACTTCGAACGTGCAACAATCAAGTGAGGCTCAACCACAACATCAACATCAACATCAACAGCAGCGGTGTTTGCATTCATCGGAGAACGGGGTGGGGGGTCTGAGAATGTTGAAAGAGGATGAGGAGGAGGATAATGAGGAAGAGGATTCGGAGGATTTTTCTGATGAGGAGGAAGAGGAATCGGGAGAAGGAGCATCAAGGGGTATGGAGGAGGATGAGAATGATGTGATGAGGAAGAGAGCGAGGAAAGGAGGGTTTGGTGGGTTGTCATCATCATCATCGATATCATCTCAGGCGATGATGCAGCAATTGAATGGCGAAGTGAGCGGTGTGTTGCAAGATGTGGGGAAGAGTGCATGGGAGAAAAAACATTGGATGAAGAAGAGGGTGGTGCAGTTGGAGGAGCAGCAGGTGAGTTATCAAATGCAGGCGTTTGAATTGGAAAAGCAACGGTTGAAGTGGGCCAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAGAGAGATAAGCTTCAGAATCAACGGAGGAGGCTGGAAATAGAGAGAATGGTCTTGCTAATTCGCCAGAAGGAGCTTGAATTGGTTAATGTTCATCAACAGCAGCAGCATCAACAGCAGCATTCTTCTACCTAGAATTGAAGAAATTACTGTCTAGTTTTATGTATGGTAGTTGAAATTAGTATAAGAGCATATGTAGACTTGGAGATTCTTCATTTTCTGTGGTAATCATTCCAAGTAATTTCGAAACATGTAGTATGCTTGCTTGTTTGTAGAC