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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20914 LG5 28303018 28303797 PREDICTED: zinc finger protein ZAT5
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 28303276 missense_variant p.Cys87Ser
T/A 28303406 missense_variant p.Ile130Asn
G/A 28303412 missense_variant p.Arg132His
T/G 28303492 missense_variant p.Ser159Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20914.1
MQMQEEHMQIIKGKRTKRQRLPSPLRLTMSTCSTADNSAAFEPPTTSDELRNEEDEDLANCLILLARGHSTPKPSHGKESGLYVYECKTCNRCFPSFQALGGHRASHKRFSKAGAEEKQVTTFGDNISKINRDDYCLTLQLSTVLYNSSNSTRSSTVNSKSKVHECSICGAEFSSGQALGGHMRRHRNFLSSPSIGAIAYAGDRIPEIPEIKKQKDVLNLDLNLPAPEDDHHRESNLLPFQSKEKVIVFSATSLVDCHY*


CDS Sequence:
>Vu_20914.1
ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCGTCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAGATGAATTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATAGCACTCCAAAACCCTCACACGGCAAAGAATCCGGGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGTGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGTTACTACTTTTGGGGATAATATTAGTAAAATTAATCGTGATGATTATTGTCTCACCTTACAATTATCAACGGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACCGTTAATTCTAAATCTAAGGTTCACGAGTGTTCCATATGTGGGGCAGAGTTCTCGTCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGATTGGGGCAATTGCATATGCTGGTGATAGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACCACAGAGAATCCAACTTGCTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTATTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA


Promoter Sequence:
>Vu_20914::LG5:28301018-28303018(+)
TACACATTCACTAAACGCACCTTTCAAAGTACGTCCAATTTAACGACTTGTTGCTTTTAGTCAAAGACGCAACTATATGCATCATCTTTACCATCTTACCCCTATCAAACTCTCCTTTTTAGTAAAAAAAAAATATCATGTGGAGAAGTTGAATAATGTGATTGCCTAAAAACATAAATAAATAAAAGCTAAATTTGTAATTAAATCATGTAAAAAATAATTAAAGTAACTTAAGGTTGTTAAATTGATGTGAAAGTAAAGTGTTTACTCATCAATGTTCTTCAGTAAATTTTGTTCCCAATCATATACCTAATAAACTTTTACACTCATATCTAATATTTTACTTTTCATCTTCTTATTTTCCTTAAAATATAAAAAATAATTATCATGTTATTTTTAAAATTGGGTTATAAGTGGTTGGTAGAGTCTGAAAATATTATTATATTTTTTTGTGTGTCTTTGTCTAATTAATAACCATGTTAATATATCTTAAAATTAATTAAAATTGGTTGACTTCTATACAAATATAAATAATTATATTTAACATAAAAATTCTCTCTCTCTCTCCCTCTCTCTATATATAATTTAATAATTTTAATCAAGTTCACTCAACAATAAAAGAGTGCTTAATATTTCATTAGAACAAAAAGTCTTTTCAAACCTTATTAGGTTAATCTCCCTATTGATTTTAATTTATTACATATAAGCTAGTACTTACAAATAAAGTGGCATGAAGCAATTCTTTCACCAAACATACAGCAGTGACCAAAATCAAACAACCTAACACTTTTTTTCTCTGACATCCATAACTAGCATAACAAAGTAAAATCGCAAGTAAAATCGAGTGAATATACAAAGATATACATAGCAATATGAGCAAAAATTAAGCTAATATATATATATTTTCAAACAGCTATTATTATACAAATTTTTTATTAAGAAAAATATAAAAAAAAGAAATAAAAAATATACGAGAGACCATATCATAATTTAATTTTGATGTAAGAAGAAAAAGACAAATTCCTGGACTATTGATTATTTAGAATAGGTATACCCTTTATAACTATTTTTAATGACACAAATAAATAATATTAATATAGTCTGTATTTCCTTTTGTTAAAACGTTTATACTTATTTATTTATGTTGATTTTAAGATATATCAGTAAAATGAACATAAAAAATTTACGAACTTTTAGTCCATATATTATTTTTTAAAAAAGAAGAAAACACATTTGATAAAAGAATATTTTAGAACATATAATTGACTGCAATTTATATACCTCTCAGATAAACATATTTACACATACCAATGATTTTGGATCATGTGTATGCCTGACTTTATTATATAGTTGACTGTCTTGTGCCACACTGATGCAGTTGTGATTAATTTGTAGAGAAAGAAACGTTCAGGTCAACAGCACATGAACTAACTGTTTAGCAAGAATAAACACACGTAAATAATGAATCATTTAATATTTAATATGATGAGAGAGATATAGATGGAATTATAAATTATTGAAAAATAAGATAGAAATAATCCTACACTTGGTTAAAATGGGATTGGAATTAGTTAAATTAAGCTGCAGTGGTTGAAGTAAAAGAAAGTAAGAAGGAAAAGCTAATAATAAAAGGTGGTGAAAGTTTGGAAAATGTGTGTGGTTCCAGGCTTGCAAACCAATCCTCCAGAAAGGAATCGTTGCCAAAAAGTAATGGGTTTGCTTCAAAGCCAACCGAATCTCACTCGTTTCCTAGCCTCCTCATGCTTAACATTGCATCTTTTCTCTCTCTCTTTCTCTCTTTCTTTCAACACTTCACATCTGTAATATAAGACTTCCAAGTTTGGAAACGCAACTCTGGCAAACCCAAAACACGTTACTATAGCTATCATAGGTACCCTTTTCCCTCTACTTCAAACCATTCTAAATATTAACTCCCACTCTCTTCATTGCGCTTCTTCCATTCTCTCTCTCTCTCATCAACATCATCTTCTTCATCACCA


Gene Sequence:
>Vu_20914(+)
ATGCAAATGCAAGAGGAACACATGCAAATCATCAAGGGCAAGCGCACAAAGCGTCAGAGGCTTCCGTCCCCACTTAGGTTAACCATGTCAACATGTTCCACCGCAGACAACTCCGCAGCTTTTGAGCCTCCGACAACCTCAGATGAATTAAGGAACGAAGAGGATGAAGACTTGGCCAATTGTTTGATTCTCTTGGCTCGAGGCCATAGCACTCCAAAACCCTCACACGGCAAAGAATCCGGGCTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCGTTTCAAGCCCTCGGTGGCCACAGAGCCAGCCACAAGAGATTTTCCAAGGCTGGTGCAGAAGAAAAGCAAGTTACTACTTTTGGGGATAATATTAGTAAAATTAATCGTGATGATTATTGTCTCACCTTACAATTATCAACGGTTTTGTATAATAGTAGCAACAGCACTAGGAGTAGCACCGTTAATTCTAAATCTAAGGTTCACGAGTGTTCCATATGTGGGGCAGAGTTCTCGTCTGGGCAAGCCTTGGGAGGGCACATGAGAAGGCACAGAAATTTTCTGAGTTCACCTTCGATTGGGGCAATTGCATATGCTGGTGATAGAATCCCCGAAATTCCAGAAATCAAGAAACAGAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCACCACAGAGAATCCAACTTGCTTCCTTTTCAGTCCAAAGAAAAAGTCATTGTATTCTCTGCAACTTCTTTGGTGGATTGCCATTACTAA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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