Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20839 LG5 27502900 27503982 nuclear transcription factor Y
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein heterodimerization activity, protein binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription activator activity, RNA polymerase II-specific, protein binding, protein binding, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
G/T 27502930 missense_variant p.Gly11Cys
T/G 27503336 splice_region_variant&intron_variant
T/A 27503415 downstream_gene_variant
T/A 27503559 downstream_gene_variant
C/A 27503570 downstream_gene_variant
A/T 27503576 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20839.1
MADGPSSPGGGSHESGDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSGKKDVQPGPSAQLTHQGSFSQGVSYTNSQVLRWLFEL*


CDS Sequence:
>Vu_20839.1
ATGGCCGACGGTCCGTCCAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGATAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATCGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCGGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTACATCGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGGGTGACACCAAGGGCTCCGCCAAGGGTGGAGACACCTCTGGTAAGAAAGATGTTCAACCGGGTCCTAGTGCTCAGCTTACTCATCAAGGTTCTTTTTCCCAAGGGGTTAGTTACACAAATTCTCAGGTGCTAAGGTGGTTGTTTGAACTCTAA


Promoter Sequence:
>Vu_20839::LG5:27500900-27502900(+)
TTATTTTTTCATTGAATTTATAATATGCTAAATACAGTAATAAATAAATAATGAACCAAAGAAAAAATAACATTATGCTGTGTTAAAATATTATTAATTTTTTTTTGTCAAAATATAAATTTCTTTTTAATATATATATATATATATATATATATATATATATATATATATATATAATAGTCGAACCACTACAAGTCTAGATATAGTAATTAATGAAAGGTTTTTTTAAAGCAATAATTAATGAGAGTTATAACTGTAATTTCACATCTTGGTTTGTATTATGTATGTATATGGGAAGCATTAAAGAAAGACCTGCACAAGCAGGAAAAGGGCAGACGAGGAGAGTCTCCCAATACTCTGCATGGTCCCAATGGTCCAATCATGCACCTTTATAAAAAAAATAAAAAATTACTAAAACTATTTAAGAAAAATAATTTTTTTAAAATAATACTATTTTAATTTCAAATCAAAATAACACTAAACAGTGGGAAATCAATTTTTTAGAGATCAAATTTCCAACTTAACTCTTTTTCATTTCGAGAACCTAATAAACTTGTGTGTCCAAATAATTGTCAAATTATTTCATGGTTGAACTTTAAACAAAACTCACTTTATTCTCACGACATTAATAGGTTGAATGAAACTTAATCAATTTGATTCAGATTTACACATAATGAAATTTATAAACAAATCAATGTAAAAATATAAAAAATAAATACTTCTTCTCCTTTTTTTTTATATATTTTTGTGATTTAACTGTAACTAAAGGAAGATTTATGAAAATGTCTTTCATAAAACCCTTTATATAATATATTAATAAAGTCGAAGTTGGGTCTAAAGACTTTATGAGATGTGACTCTTAATATTTTTATTTCACAATGTCCTACTTCAAACTTTGTTTGTAGGTACTAGGTATCTATCAAGCAATTTCAAAAAAAATTTAAAACACAATTAATCATCTCTTTCCTTTTTAATGTTTTAGTAGTTATGTACATTAAAAAATAAGTTTATACAAAGAAATGTTCCAATAATTCCCTATCACCAACTTCAAGTTATAAACAAATGATTAACTAAATTTATTATCTTTCAAGCATCGTGAATTATTTAATTAAGAAAATTAAAATCCTTATCCTATATTTTATAGTATACTATTATTATTAACAGTGTTCATAAATATTACTATCTCTTAAATCATTCTATTCAAGTTAATGGCATAAAGACTATACAAAATAATTAAAATCACATTTTTAAACTTACTCGTATTAACAAAAAAACTTATTTTCTTCACATATTTCAAACAAAGAATTCCTTATCTCCTTCCTTTCTCACATCAATATATTTTTATTTATTTTCCGTTCGTATAAAAAGTTACATTATTAATAAATAAATTATTACATTTTTATATTAAAAATTAAAATTTAGCAGGCTAATAATTTATACGGACCATTAAAACTATTATTAATAAAAAACTAATTAGTTTATTCTTCCACCTTTTCTTTTAAGTTTATAGTTTGAGTAAAAAAATGTAAGTCTACGTATTAATGAGACACGTATTATGAGAAATGATTAATTGCTATAATAAATTATTTCATTGACTTGAGGAGTTGAATGGAGAAATAAAAAAAAGGAAAAAAAAAAGGAAAAAAAAAAAAGGAAGGGTATGAGAAGAGAGAGAAATAAAAAGGGTGGAGGAAGGAGCGAAAAGCAAGTAAGGATAGTGTCAAGTGTCTGTTTGTTGTGTAATAAAAGAAAACGAACGGTGGTGATAGGCTTCAATCTAGATCTCAATCGTCTCCACCTTCCTTTCTTCTCCAGCGTCCGATTCCCTCACCGATCTCGCGCCAAATACAAACTAATTCATACCATCACAGGTATTCTTAACATTTCTCTTCACCAACATAACAACTCAACTCCTTCTCTCCAATTAGGGTTTCTTCTTTTTCAATTTCGCCATGTTTTTCACCGATTATTCCTCTCTCAAATCAGGGTTCAGGCGACTA


Gene Sequence:
>Vu_20839(+)
ATGGCCGACGGTCCGTCCAGTCCAGGCGGCGGCAGCCACGAGAGCGGCGACCACAGTCCCCGCTCTAACGTGCGCGAGCAGGATAGGTACCTCCCTATCGCTAACATAAGCCGCATCATGAAGAAGGCGCTCCCTGCTAACGGGAAAATCGCCAAAGACGCCAAAGAGACTGTTCAGGAGTGCGTCTCGGAGTTCATCAGCTTCATCACCAGCGAGTTAGTGTTTCTTTTTCTTTTTTTTCTGATTCTCTTCCGTTTTTCTGTTATCACGTGCTTTAATTTTGAATCCGCTGAATTGTGTAGGGCCTCTGATAAGTGTCAGAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTACATCGATCCCTTGAAGATTTACCTCACAAGATACAGAGAGGTGATTTTAATTTACCAATTTCATTTTTTTTTATTTTAAATGTTTGTCTGGTCCCCAGTCAAAAAACTTGTATACTGCGTGTTTTTATGTTTGGTTTATTGGGCTTTCCTAATGCTCGTTTTTGGTTTTTGCTGATTGGCATTTTTTTTTATCATGGCTTTGTTTCATGTACGGTTCGGGGATGTTGCAGATGGAGGTAATTTTGAATCTGTCATCTAATGCTTGAATAGTTGTTATGCTTTGTAATTTTTATTGTTGAGTCTCTTTGTTCATATCTCTATGTTACGGTTCTTCAATATGTTGTATTTCAGGGTGACACCAAGGGCTCCGCCAAGGGTGGAGACACCTCTGGTAAGAAAGATGTTCAACCGGGTCCTAGTGCTCAGGTAAAATGCAACCACGTTCCTGGAAGTTATGATTTATTGTGTTGCTCGAAGTATATATAAAATACACTTAGATATCATATTCGCTTTTTTTGTTGTGAAATCTGCAGCTTACTCATCAAGGTTCTTTTTCCCAAGGGGTTAGTTACACAAATTCTCAGGTAACTGTGCTCTCTTTGTTGCTGTATTATCTTCTTTCTTTGTGTTCTTCTGGGCTGTCAATGTTGAATGTTAAATGAAGGTGCTAAGGTGGTTGTTTGAACTCTAA