Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20663 LG5 25595426 25596505 PREDICTED: LOB domain-containing protein 29-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   lateral root formation, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, lateral root formation, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, lateral root formation, callus formation, hormone-mediated signaling pathway, callus formation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 25595538 3_prime_UTR_variant
T/C 25595764 missense_variant p.Ser186Gly
G/T 25595829 missense_variant p.Thr164Asn
C/T 25596089 intron_variant
A/G 25596271 synonymous_variant p.Leu54Leu
G/A 25596276 missense_variant p.His53Tyr
A/T 25596354 missense_variant p.Cys27Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20663.1
MTGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSERCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQVAHLREQAGQIYLNASATENPNEKYFGKSTNFPQYLESWFQTENSNSASQFLPKLSTDTSTQYYGTTDTFMDPNPIGNDDNSVTVEESIFFSSFEESCNSMACDVQRQWTFYQMDNLQ*


CDS Sequence:
>Vu_20663.1
ATGACTGGTTCTCCGTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTACTTGCTCACCTTCCTGTCAGTGAACGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCGCAGTATCTTGAGAGTTGGTTCCAGACGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACCGATACTTCAACACAGTACTATGGAACTACTGATACCTTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTTCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACGTGCAAAGGCAGTGGACCTTTTATCAAATGGATAACCTTCAGTAA


Promoter Sequence:
>Vu_20663::LG5:25596505-25598505(-)
TAAATCATTGAGGGAAGACTACGAAACAACGTTAATAATTGGAAGAATACAATTTATTTGTTTGATTCCTAATCGACCCCAAAGATTGGAGTTTGAGGAAATATTTTGATGTTTCATCAAGAGAATTACAATAAAAGCTAAAAAGAGGAAGTGAAAACTAAGCAGGAGAAATTGGACACTCACTGAATCAACTTGAAGGGTGAGAAGAATTAATGTCTAAAGTGAGTGAAGTTCAATATAAAAACCTGATGAAATCAACATAAGTTTTTTTTTCAAAACTAAAGATAAGTATAATCCAATAAAGTTTGAGAAGATTTTGAACTTTCTTAGTGAATATATAACCTGAGAGTAAGCGATGATAATTTTGTTAAGACGTAGATTTTATACGAAATATATTAATCCCTTGAATATAAGCACAAGTGGTATATTTCTTAACAGTTATTTTCATAATTTATATAATTTTGCAACTTTTTGTTAGGATGTCATTATTAGGTAGTGTAGAAGGAGGGTCCCATTGCACATTTGGGATGGTCCTACATGTTGGTGCCTATACTCGACAGAAGAGAGTGTTTGATTTCAGTGTTTGGAGAGAGTACACGTACTAATTTCATAATATAATTAATAACTAAATATTCATACGGTATTGTTCCACAAACCATGACTTCCAACACTTAAACAAATTCAAGTCTGGAAAGGCCAAACAAATCACATCTTCTCGGCCCTCCCTTTGTCTTTATTAGCTTCTATGTATGTCACAACCCTTTTGTTTCATTCATTTTTAGAATCTCATTTTTATTTTTATTTTTATTTTTTCTGAACCCATTTTTACATTTTGATAATATTCCAATAATAAAAATCCACCAACTAATTTTGAGCATTATTCTTTTAACATGTTTAATACCAACTTGTTTCTGGATTACTCAACTTTGACAGTGTGAGAGGAAAATTATTTGTTTAAACTCTAATGGAATATATATAATCATAGGTTCTAGTTAATCCCAATTCATTTTCTTCTTTATGTTAAATTTGTCAATGTAAGTACCGTGGTAATTTGTGCCGCTCTTGCAAATTATTGAACTTCACTGTGTGTGTTGCGGTGAACATTAACAAAATGAATTTAATAAATTTATTTTAAAGTTAAGTGATTTTAGATGATGGTGATTTATACCGTTTCCCATTTCATTCTTTTCCATGGACTAACAATATTCGTTCATTCTCGCTCAAGATTCCTGTAAATAGTCACTATGGGAGTTCAAATACGCCTTCAAAAGGATCAGAAGCACTGGCTCGTATCACAATGTAGATATAGCAGTCCTCACAGTGCCATCCTTTTGTTCATTACTCCAATCATGCATATATGTGACATACAAAAAATTGATTAATAAACGTGGCAAAGAAACGATAGGTGTGTGGGTAACAGTTGGGCATTCTTTTCTTTTGTCGCAGATGGAGGATGATTCTTGCTCCCAAGTTTAAATCAAATGTATTTGGTCAAGAGAAATCATACCAGCCTCTACATGAATTGACTAATAATTTAGCAGCACCCATTTCCAAGGTTGTAAAAATTGCTTTCTTGGTGAGTAAAGAACTATTAAATAACTCGTGGATTGGTCCATTTTGATATTACCACTGTCAAGTTAATGTATATAAATAAGTAGTCCAATAAATAATGTACTTGCGGCTATTATTATCGCATACACAAGGTACCATACATTTGATTCAGAAAAGAAGGGACAAGAGCACACATACATCAAATCATCAAACAAAATGGGTTTGGTTACTGCTACCTCTTTTGTCGTATAAGGATGTTCAAATGGCATCTCATTTTCTGACAAATAAAAATATCGGTAGAGGGGGATGAAAGTGTTTTATACGGGAAAAAAATATTGAACACTGTAGGCCATTAAGGGGACCTAGTGTAATTAAATATTCCTTCCCCTAATCCACCATTTCCTCTTGTTGTGGTGTATATAAAGATGGTGATAAATCATTATGATTTG


Gene Sequence:
>Vu_20663(-)
CACAAGGTTGAAGAGACCCAGAAAACAACCCAAAATCCTAAAAGACCACAAACCCCTCAACCAAAAGGCCAACATGACTGGTTCTCCGTGTGGAGCCTGCAAATTCTTGAGAAGGAAGTGTGTGAGAGGCTGTGTTTTTGCTCCTTACTTTTGCCATGAACAGGGTGCCACCCATTTTGCAGCCATTCATAAGGTCTTTGGCGCAAGCAATGTCTCAAAGCTACTTGCTCACCTTCCTGTCAGTGAACGTTGTGAAGCTGCTGTCACCATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCAATTTATGGCTGTGTTGCTCATATTTTTGCACTCCAACAACAGGTTTTTTCTTTCCCTTTCATAAGCATAATCAGGCTTACTGTGTTGAAAACCCTAGCTGATTTGTGGTTATGCCAGTTAACTAACTTATCCACTTTTTTGTTTGATCTTTGCAGGTGGTGAATTTACAAGCACAAGTAGCTCATCTCAGGGAACAGGCAGGTCAGATCTATCTCAATGCCTCTGCCACTGAAAACCCTAATGAGAAATACTTTGGAAAATCTACCAATTTTCCGCAGTATCTTGAGAGTTGGTTCCAGACGGAGAATTCCAACTCGGCTTCACAATTTCTTCCTAAATTGTCCACCGATACTTCAACACAGTACTATGGAACTACTGATACCTTCATGGACCCAAACCCTATTGGAAATGATGACAATTCCGTAACAGTAGAGGAAAGCATCTTCTTTTCTAGCTTTGAAGAGAGTTGTAACTCCATGGCCTGTGACGTGCAAAGGCAGTGGACCTTTTATCAAATGGATAACCTTCAGTAAGAGTGAGTTTTGGTGATTATGAAATTTACTTCATGAAAGATCAGAGTCTGCATGAAAGAATTGGTGAAGTCAACTTTATCAATTTTGAATTTGTTGCACATGTGTGGCGAAGCATGCACTTTATTACCTGAGGAAGCCTAGAATGTGATATATAATTGTAATGGGAATCCGCATTATAGTATTGTTTTGTTTAGCTTAGTGAAATATTGGTATTTATTAGAATAATAATAAAATCTTATATTG