Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20662 LG5 25585299 25586621 PREDICTED: LOB domain-containing protein 16-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   callus formation, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, lateral root formation, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, lateral root formation, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, lateral root formation
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, promoter-specific chromatin binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/T 25585359 stop_gained p.Lys21*
G/C 25585370 missense_variant p.Arg24Ser
G/T 25585372 missense_variant p.Arg25Leu
G/C 25586253 downstream_gene_variant
T/A 25586497 missense_variant p.Ile163Asn
A/G,* 25586503 missense_variant p.His165Arg
G/T 25586545 missense_variant p.Ser179Ile
G/A 25586548 missense_variant p.Arg180Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20662.1
MASASGNGGSNGSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLMESRNMENNNHEWAGNHSVAMNHPFCPTYMNPISPQSSLESIDHSSMNDGMSMQDIQSREERAYNNNELGELQELALRMMRN*


CDS Sequence:
>Vu_20662.1
ATGGCTTCTGCAAGTGGAAATGGAGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCGAGGAACATGGAGAATAATAATCATGAGTGGGCAGGGAATCATAGTGTTGCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAACAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA


Promoter Sequence:
>Vu_20662::LG5:25583299-25585299(+)
TTTTTATAACTCAAGTTCTTCAATATTAATGGAAAATTTATCCTCGAATCGACTTTAAATTAAATTATAAATATATTTTAAGATATTCATTTAAATTTATCAATTTAATTTATTTTATCAAATAAGAACTCAAACTTTCTTCTTCTCTTTCTTATTGATAGCTCGATTCACTGAACCATTTCCAAATGAAACATGTTAATTGTTTCAATCTACCCTTAATCATTGAGTCAACTTCTCACCTGTTTCTGATAAATTGAAGATAAAAAAAATTAAACAAATTGATATGTTTTACTAATTCTATCTTATATCAAATTTATCCAAAAAAAAAAGTCTTTAAGAATTATATTTTTCTAATTAAAAGAAAAAAGAAAATAAATAAATGTGATAATAGTTCTGGTCGGATATGTCATAGTATTAGTGTTCTTGTTGTTGTAACTAACACATTATTTTTCAAATTGATGTCTTACAATTTATCCACTTATTAGCAACACGTGGTTAATAATATGATAATATAAAAAAATAACACTAGTAATTAATGGAGGAATGTGCTAATAAGTATTTAAAAAATGCCGGTTAAGAAACAAATCATACATTTAATTAAATGCTTCCTTTGTTCTTTTATGATACTCTTTTAATGTTTTTCTACTAAAATCAAGAAAGTCGTTTAATTTTTCATATTTTTAATATAATTTTGAATAAGTTATCTATTATACTTTTTTCAATTTGTTTTAACGTAGATTTATATTTATCGTTATACTTTTCCCCTCTTATGCTACCTATTTTTGTTTTCTCTCCATATAATTAAATTAAACGTATAACTAAAAAAAATCGCATTATTTAAAATTTAAAACATCAAATAAAAAACTTTAAATCACTTAAAAAACTTAATAATTTTATTTTTTTTATATAAAAAATATTTACTTAAATTCTAGATCCCTTCTAATTGTAATCCATCCAGTGTTATATATGGTCTCCTTTAAGAATTCTAAGAACGAAAAGAGGTGTGAATACATGCAGAAAACATTTCTATGTTGAAATCAGAAATTTGAGATGATAAGTGGAAATATGAAATGTTATTAATCAACTCATACTTATCTCTTGGGTGGACTTTTATTTGTTTACACATTTTCTAATAAGGTTTACCCCTTAATCTTTGTTTAATCTACATAATTACACTTTCACTGTACACATTTGATAAAAAATAGTGTATAGTAGGATGTGTTAAGTATTCCTAAAACGAGGTGGTAATAATCTTAAGCATGATTTAAAACTAATATTATGATAGGTTTGATTGGTGTTTGTGGAAGGAGGTGGTAAGAAGTAGGAAGTTGTCGGTAGAGTTAACCGGCAGGTGCCAGTCTACTAACTGGAGTTAGGAAGCGACAAACTGCAGCAGTTCCAAGGTGCGGCGTTCGGCGCAAAATTGTAAAACAAAAACTAATCAACCAATTTATTTATCAAACCAAACCAAACAACCATACCAACCCCATACAAATACCTATCATTACATAAATCAGAGCTTTCAGCTTCTTAATTAGCAATTTTCAGTTTCAGATAAAATAATACATAATTATTTTTAATAATACTATTTTAATAATGTAAGAAAAACAACACTATTAAATAAATCTACTCAATATTATAAGTATGGTAATAATATTGAAAAAAGATGAATGATTTAGTAAATAGATAGATAAAATAGGAGTGTGGAAGCAATAGAAAAACCAGTGATGTAATGCCTCCACCATTAAGAAATGTTCCCTCTGAACCCTACATAAGAGGGTCACATGTCCCCATTAACATTTCTTATAAGACTCTTTATGCCCTTATTCCCACTGTCCCACTTCCCCTGACCCCTTCCCTCTCCCATACCATACTCTTCACTCACATTTTAGTTTGCACCATTTCCTAGTGTGTTCGTGTGCCTACAAATTTTATTCACATAAAATACACCAACGCCTCTTTCTCTTTCTCTTCTGCTCATCACTACTGTACTCATTCTA


Gene Sequence:
>Vu_20662(+)
ATGGCTTCTGCAAGTGGAAATGGAGGCTCTAATGGCTCTGGCTCTCCTTGCGGGGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCTGACTGCATCTTTGCACCTTACTTTTGCTCAGAACAAGGCCCTGCTAGATTCGCTGCCATACATAAAGTGTTTGGTGCCAGCAATGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAAGCTGTTGTCACAATTGCTTATGAGGCTCAGGCTCGTATCAGAGACCCCGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAACAACAGGTACTATTATATATATATTCTCTCCAACCTCATCAAAAGTTTCATACTTTCTGGGAAAATAAAATACCTAGATCTTCTCATTAATCATGCTCAGTTTTTTTGTTTATATCTCCTCGTAAACATCGAATAAGTAACACATTAGCCCCTATTTGGTGTTAGACAAAACTTGAATACAGTTTTAGAGATGTTTTTGTCTGATCAAAATCAAAAGTTTATGTCAATAGCTTACATGTAAACATCTGTTATTTGAATTATTAAGCTTCGAATTTAATGGAAAATAAGACGGATAGGGAAGATAATACCGAAAACACTTTAAAAAGTATGTTTAAGTTTTATTCTTAAATGGGTTTTTATCAAGAAGTAGACATAAAAATAAACCCAACTAGTCTCTCGTCAATCAAATTCTGTTTATCATGTTAATTTTCTTTCCGAAACCCCTTCTTGGTTATTTAGTTTATGTTGGATATTTGGAAAAATGGGGTCATTCAAGAAAACCAGCTACTCCTGTCGTTTTCTCTTGCTTGAAGTCTAGGTACCTAAGTCTGGCTTCTATGACGCCTCAAGGGCCAGTGCTCAAAGAATAATATTTATTAGCATTGGCTTGTATATAAAATACACAGCAGTCAATTTATTTAGAAAGAAACAGTTGTGTAATAAAAATTCCGAGTCTTGTAATTTTGTTACATTTTGCTTTTTTTTGTTGAAATGCAGGTGGCATGCTTGCAAGCACAGCTGATGCAGGTGAAGGCTCAGCTGGCTCAGAACCTGATGGAGTCGAGGAACATGGAGAATAATAATCATGAGTGGGCAGGGAATCATAGTGTTGCAATGAACCATCCATTTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGATCACAGCAGCATGAACGATGGAATGAGCATGCAAGATATACAAAGCAGAGAGGAAAGAGCATACAACAACAATGAGTTGGGTGAGCTGCAAGAACTGGCGCTCAGAATGATGAGGAACTGA