Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20533	LG5	24115533	24116708	PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	signal transduction
Cellular Component	located in	plasma membrane
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
C/A	24115642	missense_variant	p.Ser356Ile
G/T	24115893	synonymous_variant	p.Ser272Ser
G/A	24116081	missense_variant	p.Leu210Phe
C/T	24116179	missense_variant	p.Arg177His
A/G	24116298	synonymous_variant	p.Gly137Gly
G/T	24116409	synonymous_variant	p.Thr100Thr
G/C	24116505	synonymous_variant	p.Val68Val
A/T	24116506	missense_variant	p.Val68Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20533.1

MDVASYSLLFVCFLQSVRAILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTADPCNFPGVYCVDDKVVALNLGDPRAGSPGLTGKLDHSISKLSALADLTVVPGRIYGPLPQSISQLKNLRFLGVSRNFISGEIPAGLSQLRNIRTIDLSYNQLTGTIPPSIGTLPLLTNLILCHNRLSGSVPSFASAFSLTRLELKHNALSGSLAPYSLPPSLHYLSLSWNKLTGPVDRLLKRLNRLNYLDLGLNQFTGPIPTEIFSFPLTNLQLERNQFSGPVQPVNEVTIQTVDLSYNRLSGQVSPMLANVQNLYLNNNWFTGQVPGSFVERLLAAGIQILYLQHNFLTGIAISPTAEIPVSSTLCLQYNCMVPPVQTACPFNAGKRKIRPAQQCNRR*

CDS Sequence:
>Vu_20533.1

ATGGATGTCGCTTCCTACTCTCTTCTTTTCGTCTGCTTTCTTCAATCGGTCAGAGCAATATTAGACCCCAACGATTTCCTCGCTCTGCAATCCATTCGGAAATCGCTTCACGATGTTCCCGGTTCTAATTTCTTCTCCTCCTGGGACTTCACCGCCGACCCCTGCAACTTCCCCGGCGTTTACTGCGTCGACGATAAAGTCGTCGCGCTCAACCTCGGCGACCCCAGGGCCGGTTCGCCCGGTCTGACTGGAAAACTCGACCATTCGATTTCCAAGCTATCTGCTCTCGCCGACCTCACCGTCGTCCCCGGAAGAATATACGGCCCTCTCCCTCAGTCGATCTCCCAGTTAAAAAACCTCCGGTTCCTCGGCGTCAGCCGGAATTTCATCTCCGGCGAGATTCCGGCGGGTTTAAGTCAGCTTCGCAATATTAGAACCATCGATCTCAGTTACAACCAGCTCACCGGAACAATTCCTCCGTCCATCGGAACCTTACCGCTGCTGACCAACCTTATCCTCTGCCACAACCGCCTCTCCGGTTCGGTTCCCTCGTTCGCCTCGGCTTTTTCCCTAACCCGGCTCGAACTGAAGCACAACGCTCTCTCCGGTTCCCTCGCGCCGTACTCTCTCCCTCCCTCCCTACACTACCTGTCTCTATCGTGGAACAAACTCACTGGACCAGTGGACCGCCTCTTAAAGCGCCTCAATCGGCTTAACTACTTGGACCTTGGCTTGAACCAGTTCACAGGCCCAATTCCGACTGAAATATTCTCATTCCCCCTCACCAACCTACAACTGGAAAGAAACCAATTCTCCGGCCCGGTCCAACCGGTCAACGAGGTGACCATCCAGACCGTTGATCTCAGCTACAATAGGTTATCCGGTCAGGTGTCGCCAATGCTGGCAAACGTCCAGAACCTGTATCTGAACAACAACTGGTTCACAGGGCAGGTTCCCGGCAGCTTCGTCGAACGGTTATTGGCGGCGGGCATTCAGATACTGTATTTGCAGCACAATTTTCTTACCGGCATTGCAATAAGCCCGACGGCGGAGATTCCGGTGAGCAGCACCCTGTGTTTGCAGTACAACTGCATGGTGCCACCGGTACAGACGGCGTGCCCCTTCAACGCCGGGAAGCGGAAAATCAGACCAGCTCAGCAGTGCAACCGCCGCTGA

Promoter Sequence:
>Vu_20533::LG5:24116708-24118708(-)

CGCTCAAGTCAAGAAAGGAATGTATGATCGATCAGAAGAAGAATAATCTCTCTCTTAATTTCTCTAAGGGGAAAAACGTACCTTTTTTCTGGTGTGCTTTGTTTATTTAAAACAGGGAAATAAACCGTTTACTTGGAAATCCGGACAGTTACCGAAGTGGACTATTTGGAAGTTGTAACTGCTAGGTCGTGTTTGATACTGAGTCAATTACTTGCATGATTCGTGGCGTTAGCTAATATTTGTAACTGCTTATTCTTAATTGCTGAACTGTTTTACTATGATATCGCTCACTATATGTCGACCGTCGTATGTGTCGACATAAACATACGAGATGTCGTGCGAGCGATATATGTCGCGACGTCACTGTTTGGTTGTCGATCACCAAACGGTCGACATCACCAAGTGGTCGACATCACCAAGTGGTCGACATCAACATGTAATCGTGTGACATTACGACCGTAGGGGAGCTTTGTACTGCATACCCTTATTATTAGTTTTAACTGTCGCCATGTCGCCCGGGTTACCGGTCGACCGCTGGTGAATTAGGTATCCTACGGTACAATATATATGTATATGGTGACATTATGAAAAATCTGATTCTGTTATGTTGACTGAGAGGCTTCCTCTCCAAGAAAGTGGGATACTTGACAGAAATTGATGAAAAGCAGAATATGTGGGAATTGTGAAACAAGTTTTGGCGAATGCATATTATCTTCAACTCAACGCAATTCACCATCACTATGGAGAATGTTGGTTCTTTCTTTTCTACTACGTAATAACAAAATAATTAAATTATTTTTTCAAGCGAATTCATTGGTCCCTTCCAACTTTATATTCCAATACGGTTCGTACAAAATAATTGCTAATCAAGTCAAGCATACAACATTGTGTTACAAGCCACACCCTCTTCTTACAGTTGCTCGACTTTACGAGTGACAGTTATAGTTTGTTTTTTTTTTTTTTAATTTAAGAGGCACCAATTAATAAAAGAAGGGTAAAATGTTTGTAACATTAAATCGGAAAAAGTAATTTGGTTTTTATGTATTTTGGGAAGTGGGCGTGTATTTAATATGATGTTCAACAGTGAAATCGTAAGTCATGTTCGTTGAAAGGCTTGGAAGCGTGATGAATGATGACCACATCAGTAAATGAGTGGAACCAAAACAACGTAGACACATTTATGTGTTTGCTAAGATTTCTGCAACTCAGCCGAAGTCACAAGAAGCATGTGAGCATGAGCTCGACTAGCCATAGACTGAACTGAAGTGGGTGAAGCCGAATCTGAATCTCGATCCAACCCAGACCGGTCTACTTCTTACTTTAACATGAACTGCTTAGCTGTCAGTCTTAGACCGTGACCCAACAATCCTCCTTAAAAAACACAGAGTAACGTTTACATTTTACAACAAAACAACAACAATAATAATTATAATATCTAACGTGTCACATGCACATGCACAGAAAACAAAAAATAGAATTAACGCTTCGGCCGTTTAACTGGTTAACCAACAACATTGTCAGCAGTGTTACCCACATAAAACGTACTCTTGGGTTGGGTTGGAGCCCATGTAGGCTCGGACAACCGTTTGATCCAAACCTGTACCTTTCACCCGAAGCTGCTCCGAACCAAGGAAGATTGACAAAATTAGCGTGTACTGTGCAATTAGGAAATGGTATTATAATTTGCCAGCCATACATAGATGGTAGCGATTTGTATTTTACCTGAAGCGGACAGAGAGAGAAAGCAAAAGTGTGTGTGGGAGAGAGAAGTGGAAATGATGAAAAGGCAAAGGCAAAGGCATTGAAGGAAGAAAAAGTAACACAGATTCAGCAAGGAATTGCTTCTCCTCCAAGACTAAGTAAGCCAGCTATCGCCAGTTTCCGCCATTAAAACTTTCACACCATTTCTCACGGGAAACCCTCGCACTCCAAAACAAAAAAGTAACCCTCCCATTGCTATAAAAACCCTTCGCCACCCTTTTTTAGCTCTCCAACTCCCA

Gene Sequence:

>Vu_20533(-)