People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_20474 LG5 23457450 23462365 protein STRUBBELIG-RECEPTOR FAMILY 2 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   phosphorylation, protein phosphorylation, phosphorylation, protein phosphorylation, protein phosphorylation, gametophyte development
Cellular Component   is active in   plasma membrane
Molecular Function   enables   ATP binding, protein kinase activity, kinase activity, protein kinase activity, ATP binding, protein binding, protein binding, protein kinase activity, identical protein binding
SNP Position Effect Amino acid change
A/G 23457926 synonymous_variant p.Pro709Pro
C/T 23457936 missense_variant p.Gly706Glu
T/G 23458323 intron_variant
T/C 23458327 intron_variant
A/G 23458925 synonymous_variant p.Ile552Ile
G/A 23459289 synonymous_variant p.His467His
A/G 23459299 missense_variant p.Ile464Thr
C/A 23459343 missense_variant p.Lys449Asn
T/A 23459499 downstream_gene_variant
A/T 23459500 downstream_gene_variant
C/T 23459603 downstream_gene_variant
A/G 23460304 splice_region_variant&intron_variant
C/T 23460495 downstream_gene_variant
T/A 23461144 downstream_gene_variant
A/T 23461145 downstream_gene_variant
G/T 23461179 downstream_gene_variant
T/C 23461192 downstream_gene_variant
A/T 23461197 downstream_gene_variant
A/C 23461623 missense_variant p.Ile94Ser
G/T 23461835 synonymous_variant p.Ser54Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_20474.1
MIRHFLYVHLNLFAFSILISQILAFTHPSEVSALQDLYRTFNYPPVLNGWNGSDPCGESWTGVACSGPSVIQLKLQGLNLTGYIGSLLYNLPNLNQLDVSSNNIEGEIPFGLPSNITYMNLSHNLLHGPIGDVFSALNNLKEMDLSYNNFSGDLPYSFGSLRNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGILPQHFQSILNLWIGDNKFHVADNSPPWSFPPDTMSIEQNTSSPPTTQANVIQNCSRPSEAPPRVNEAHPRVNEAHPRVNEAHTRVREAPPRVHEAHPKVNEASPGLREAPPRVNGDHPRVNEAHPRVREAPPRVHEAHPKVNEAPSGVSEAPPRVNEAHPRVNEAPPQVHEAPVRVIKHKKNHIGPGVIAFMIGGGTLMATGVALFVAILLNKLRLENPNLKSSESSHGSFPSHPTSATIGVSSTALEESPSIPLFNSASLMGPVRLLSTNHNNTEEPFRKGFSKSDRYSGRTKIYTVAELELATNCFSEANILGEGSLGPVYRAKFPDDKILTVKEINIAQMSLKEEEKLLDVICTVSRLKHPNILALKGYCLDKGKGLLVYDYVGNVTLNDALHSEACEPVSWVHRLRIALGVAQALDYLHSAFCRPVAHGNLKAANVLLDENLMPRVCDCSLVILRTLNISQVDIPANEIDIEEMGYHAPDHGQPGTSSRKRDVFAFGVLLLELLTGKKPFDRARSVEEQYLVKWAPPMLPYRASLEQLVDPRMKRTFSSKALSRYADIISLCIQPARQLRPAMSEVMESLESLYQMFDIEKSDAADGTELDPF*


CDS Sequence:
>Vu_20474.1
ATGATTCGCCACTTTCTCTATGTGCATCTTAATCTCTTTGCATTCTCAATTTTGATTTCTCAGATCTTAGCGTTCACGCATCCAAGCGAAGTGTCAGCTCTGCAGGATCTATACAGGACCTTTAACTACCCACCTGTGCTCAACGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAGTTGCTTGTTCTGGACCATCAGTTATACAGCTAAAACTTCAAGGATTAAACCTCACAGGGTATATTGGAAGTCTGCTATATAATCTACCTAACTTGAATCAACTTGATGTCAGTTCAAATAACATAGAGGGCGAAATTCCATTCGGTTTACCCTCCAATATCACATATATGAATTTAAGCCACAATTTACTACATGGACCAATCGGTGATGTATTTAGTGCTTTAAATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTCAGGAGATCTACCATATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTTCCTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCTGAACTTCCGCTAACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCGCAGCATTTTCAATCCATACTGAATTTATGGATTGGAGACAATAAATTCCATGTGGCTGATAACTCTCCTCCCTGGAGTTTTCCGCCAGATACCATGTCAATTGAGCAGAACACTAGTAGCCCACCCACGACTCAGGCAAATGTCATCCAGAATTGTTCTCGTCCCAGTGAGGCTCCTCCCAGAGTAAATGAGGCTCATCCCAGGGTAAATGAGGCTCATCCCAGGGTAAATGAGGCTCATACCAGAGTAAGAGAGGCTCCTCCCAGAGTACATGAGGCTCATCCCAAGGTAAATGAGGCTTCTCCCGGATTACGTGAGGCTCCTCCTAGAGTAAATGGTGATCATCCCAGGGTAAATGAGGCTCATCCCAGAGTACGAGAGGCTCCTCCCAGAGTACATGAGGCTCATCCGAAGGTAAATGAGGCTCCTTCTGGAGTAAGCGAGGCTCCTCCTAGAGTAAATGAAGCTCATCCCAGGGTAAATGAGGCTCCTCCCCAAGTACACGAGGCTCCTGTCAGAGTAATCAAGCACAAGAAAAATCATATAGGTCCAGGAGTAATAGCATTTATGATTGGTGGAGGAACACTAATGGCCACAGGGGTGGCTCTCTTTGTTGCAATCCTTTTGAATAAACTTCGTCTAGAGAACCCGAACTTGAAGAGCTCAGAAAGCAGCCATGGCTCATTTCCTTCTCATCCGACCAGTGCAACCATAGGGGTATCTTCTACCGCACTCGAGGAGAGCCCAAGCATTCCCCTCTTTAATTCTGCATCCTTGATGGGTCCTGTGAGATTACTTTCCACGAACCATAACAATACCGAGGAACCATTCAGAAAAGGTTTTTCTAAAAGTGACAGATACTCTGGAAGAACGAAAATTTACACAGTAGCTGAGCTTGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATCCTAGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAAAATTTTGACCGTGAAGGAGATAAACATCGCGCAAATGTCTTTGAAAGAAGAGGAAAAGCTCTTGGATGTCATTTGCACGGTTTCCCGACTGAAGCACCCCAACATCTTAGCACTCAAAGGTTACTGTTTGGATAAAGGAAAGGGTCTACTTGTTTACGATTATGTTGGAAATGTCACTCTAAACGACGCCCTTCACAGCGAGGCATGCGAACCTGTGTCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTAGACTATTTGCACTCAGCGTTCTGCCGTCCCGTGGCCCACGGCAATTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGTTATTTTGCGAACACTGAATATCAGTCAAGTTGACATACCGGCTAATGAGATTGATATTGAAGAGATGGGCTACCATGCGCCTGATCATGGCCAACCAGGAACCAGCAGCAGAAAGAGAGACGTTTTTGCCTTCGGGGTGTTGCTGCTGGAACTGTTAACAGGAAAGAAACCTTTTGATAGAGCCAGGTCAGTGGAGGAGCAATATCTGGTGAAATGGGCTCCGCCCATGCTTCCTTACAGAGCGAGTTTGGAACAGTTGGTGGATCCCCGCATGAAAAGAACATTTTCGTCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGCCTGCAAGGCAACTCCGTCCTGCAATGAGCGAAGTTATGGAGTCTCTTGAATCTTTATACCAAATGTTCGACATTGAAAAGAGCGATGCAGCAGATGGTACTGAACTTGATCCATTTTAG


Promoter Sequence:
>Vu_20474::LG5:23462365-23464365(-)
TCAAGAAGTATTTTATGTTACCTTTCTGAATCTTATATTAATTGCGAAACCAGGATTACCGATGTTGTAGTCTAATTAAGTCACCCTGAATCTGCTGTTTTCGTAGCAAGTTTTATGTTGTGTTCCTTCTATTGTGTAGGAAGGAGCATCAAAACTGCACTCTCTGCTGGATCGGCATTAGCATTCACATCTGCATATATTGATTTCGGTGGTCAAACATTAAAACATGACGAGGGGAAAGAGTATGCCGCTTACACAACAAAGAAAAGAACCAGTGGTGATGAATAATTATTAATTTATGCACTTTTATGACCGAAGGCGTTTGAAATTAATAGGAAAGAGTGGATCACTCTTTTGTAGACCCCTCTGTTTGTTGAGTTGGAATTTCATACTTGGCAGTTTTTTCCATATTGTTTCTTTATGTAAGTTGCTGATGTTGAACTGGTTGAATCCCAATAAATGTTCTATTTTGAGATTCTTGAAGATAATTTTGAGATTCTCAATACAATGACATTCGGAGATGATATTTTGGAATTTGTATTTCAAATGTTGTCGAATAGTTGTTTTTTAAATGTGTTACCTAAGAGGGATTTTAAAAAACTTTATGAGCAGAGGATACAAGTTCTTCGAAAACACTTATTTTGTAAGAAAATGCCATATTTCTATAACGTTAATAACGTGAAAAGCTATAAAACATGTATAAATAATATATTCAAAGTAACTGCAAAACTTTTAGGAATAATATATTATGTTTTTGTAATCTTTGACAACATTATTCTTAAAATCAAATTGAACTTATTTTTTAGTATTAGTTTGAAATGAAATTTTGATACATGGTGGATAATATGAAAGAAATGATATATTATGAAATATTTGAATAAATATGATATATTCTGGAATTTGTATTTAATAAAGATATTTTTAATGTGTTAAGAGGTAAAATATTTTGTAATACTTTATTAATAGGTGATGTTTTCTCGTAATACTTATTTTGTACAAAAAAGAAATTGTTATATTTTAAGAATGTTCATTTTGTACTTTATTTAAGTATAACTACGGACGAGATGATGTAAATATTTATAATTTTTGTTTAGAATTATGATCTGAAACACTTGTGTTTTTTTACTGAAATGTGTCCAAAGATTTTTTAATCTACTGAAAATGTTCAGTATTGTGATTCTCAAAACTGTCTCCATGTTTCAGCTTCATGGTCTTTTCACTCCATCCAATTAAAAACGACGAATATAGATAATTTGTAGTTATATTATATTGTGTACTCTTCCTCCAAACTAGTTAGCAAAAAGAATTTATGATTATTTTGGTATCACCGTGTTTTCTTACAAGTTATATACGATACTTCTACAATAATCGTTATTAATATAATATTATGGAAATTTCATAGACGTGATAACGATGATTAAGGACATGTTAAATGGCCTATTTCGTGTTTTGAGAATTTCATATTCCCCTGTATAGTTTAGGTTGAACCGGGTGGAGGTAGCACGAGGTGACGTTGGTTGTTGGGTGTCGTGATGCTTTGGTGAGTTGCGGTACGTCATGTGTTAAAGCTTGTAAATGTAGTTATAATTGTGGGGTTGCAAGAAGAAATAACCCTCAATAATTAGACACAGGTCCAGTTCCCCATCAAAGCCCAGTAGACTTTGGCAGGCAAGCAGGCCCAATAACTCGTTTCGCGCCAAAACCAATATAACGGACTAAGCTACGTGGACCCCATCACAACAGAAACTAACCCTGCGTACAGAAACAGTTGAAGACACCATTCTCACTGTGACACTGTCACTATAGTTTCATGCAATCTTGATTCTTTTTCCTTTTCTTCTGTTTTTCCCTCAAAATCTTCTCTTCCATTAAGTTCTATCCGAGTTCCATTAACCAGAAACAAATTGTATGCATGTTTGGGAACTTAGAAAGAACGATAAAACGCAAAGAAAACACATTGTTGATATTTCTGTGTCTTGTGTTTTCCGATTCTCAGGAAA


Gene Sequence:
>Vu_20474(-)
ATGATTCGCCACTTTCTCTATGTGCATCTTAATCTCTTTGCATTCTCAATTTTGATTTCTCAGATCTTAGCGTTCACGCATCCAAGCGAAGGTAACTTAGATAAATAACTTTGTTCACTCCTTTTTTTGTCCTAGATTTTCTTTTTCTTGGAAGCATATTTGAAACATTTATTCGTTACAATCGTACTAAGCGTTTGGTTGCAACCAAAATTTTTAGACTATGTTTTATTTAGACTTCTTGTTTTATTGTCACTGAATTCAGTTTGATATTCTAGATTTGCAATTCTGCCATCCTTAATGAATTCTAAAAGCTAGTTTCATCTTTTAAACTTATATATTCAGGTATTATTATTATTATTATTATTACTATTAAATGTTATCATAATGTTTGACGGTGGACTATCTTCCTTCTCATTCTCTAAACTATATATTTGTCGTACTTTTTTTTGGATAAATAGTGTCAGCTCTGCAGGATCTATACAGGACCTTTAACTACCCACCTGTGCTCAACGGATGGAATGGTAGCGATCCTTGTGGAGAGTCTTGGACAGGAGTTGCTTGTTCTGGACCATCAGTTATACAGCTGTAGTGCACAAAGTCCACTGATTATATTTCCTATTTTTTTCATAGTCAATGTCACTAATAACTATCTGTAATTCTCTCTCTCTAAAAGCAGAAAACTTCAAGGATTAAACCTCACAGGGTATATTGGAAGTCTGCTATATAATCTACCTAACTTGAATCAACTGTGAGTGTTTGTACGGTATTAGGCTCTTATCAAGATATTTTATCGTCAAATCTGCTATTTGTTTATTTCCAGATTTTGTTTCTTTAGTGATGTCAGTTCAAATAACATAGAGGGCGAAATTCCATTCGGTTTACCCTCCAATATCACATATATGTAAGTCAGCTTCTCTTCACCTTGTTCCTGCAAAATTAATTATATGCTTGTGATAAGCATGCCAGTATATATGTAGCAGAGTTGTTCTTATGATTCTGTATTTTGGAAAGAAAATAAAGCTTCCACTATTTTAACCATTTGAACCAAATATCCCAGTGGTAAAAATCTATGTCGTCTGAGCTGCATTGGAGTAAAATGGAATTTCGTTCGTCGGAAGGTTACCACGTTTGAAATTTACTCCTGAGGAAAATTATGTGTTTGATTCTGTCTTTAAACTATCTAAACCTTTTTTTTCATGTTACTGGTCATCAGAAAACAATAAAAAAAAATTAGAACTAAACTGTGAACAATTATACTAGTTTACTTGCTATATTATTGTTGATTTGATAGAGATGGTAATACAAGTAAATATGCTTAAACATTAATTAAAGTTTATTCTTCACATTAATTAAATATACTAATGACTGAAATCATTGTTATTGTATGTTGTCTTTCAGGAATTTAAGCCACAATTTACTACATGGACCAATCGGTGATGTATTTAGTGCTTTAAATAATCTCAAAGAAATGTATGTCTTTAAATAGAGCTTTACTAACGATAACATTCTTTTTTGTTCAAATATCATTTTATGGACTCGAAAAGGATTTTCTTTTTTCAGGGACCTTTCATACAATAATTTCTCAGGAGATCTACCATATTCATTTGGTTCCTTAAGAAACCTTGCCAGATTGTAAGAAAACTTTCCTTATTTACTTTTCTAAGTTTGATTTTTGTTTCATCATATACTCAAAGGCATAACTATACTTTATTAGGGTCTGCTTTTTTATCTATAAAATGGTTCTTGTATGCAGGTTCCTGCAGAATAACAGATTCACTGGATCAGTCACCTACTTGGCTGAACTTCCGCTAACAGATTTGTAGGGTTGTCATTCACATTTTCCCAATGTATATTTTCCCTTCTATTACTTGCTCATTTGCCTATATTGCCAGGAACATTCAAGATAATCTGTTTAGTGGCATTCTTCCGCAGCATTTTCAATCCATACTGAATTTATGGTCAGTGAAAACTATTTCAAGTGTGGTTCACCACCACTAGTTTCTAGCATCAAATTGAAATAATGAACGCAAAACATTGCATAATCAACTCTATACCTTCACTTAGGATTGGAGACAATAAATTCCATGTGGCTGATAACTCTCCTCCCTGGAGTTTTCCGCCAGATACCATGTCAATTGAGCAGAACACTAGTAGCCCACCCACGACTCAGGCAAATGTCATCCAGAATTGTTCTCGTCCCAGTGAGGCTCCTCCCAGAGTAAATGAGGCTCATCCCAGGGTAAATGAGGCTCATCCCAGGGTAAATGAGGCTCATACCAGAGTAAGAGAGGCTCCTCCCAGAGTACATGAGGCTCATCCCAAGGTAAATGAGGCTTCTCCCGGATTACGTGAGGCTCCTCCTAGAGTAAATGGTGATCATCCCAGGGTAAATGAGGCTCATCCCAGAGTACGAGAGGCTCCTCCCAGAGTACATGAGGCTCATCCGAAGGTAAATGAGGCTCCTTCTGGAGTAAGCGAGGCTCCTCCTAGAGTAAATGAAGCTCATCCCAGGGTAAATGAGGCTCCTCCCCAAGTACACGAGGCTCCTGTCAGAGTAATCAAGCACAAGAAAAATCATATAGGTCCAGGAGTAATAGCATTTATGATTGGTGGAGGAACACTAATGGCCACAGGGGTGGCTCTCTTTGTTGCAATCCTTTTGAATAAACTTCGTCTAGAGAACCCGAACTTGAAGAGCTCAGAAAGCAGCCATGGCTCATTTCCTTCTCATCCGACCAGTGCAACCATAGGTAATTCATACAGAAATACATATGCCGTGAGGTACTTTATATGCCATCTGTCATGGTTGCAAACTGAAGTGATAAAAGAAAACATAGAACAAATAATACAATAAAATCTTGATCTTATTGAAAATTCACTTCTAGTATGTAACAAATACCTCTCAGGGTTAGTATACCATTCCACTTAGTATTTCTGTGAATTCGTTTGTATCGTTAATCATGCTTATTTCCCGCCCTCTGGGTGATAGGGGTATCTTCTACCGCACTCGAGGAGAGCCCAAGCATTCCCCTCTTTAATTCTGCATCCTTGATGGGTCCTGTGAGATTACTTTCCACGAACCATAACAATACCGAGGAACCATTCAGAAAAGGTTTTTCTAAAAGTGACAGATACTCTGGAAGAACGAAAATTTACACAGTAGCTGAGCTTGAGTTAGCTACTAATTGCTTCAGTGAAGCCAACATCCTAGGAGAGGGATCTCTTGGCCCTGTTTATAGAGCTAAATTTCCGGATGACAAAGTACAATCTTTATCTTTATTTTGGATACTAATCTTTTTATCACGTTCGGGTTTCAAATTGCTGCTTTCAAACTGTATAACATGTTTTTACCTTTTGTTTTGGTTGAAGATTTTGACCGTGAAGGAGATAAACATCGCGCAAATGTCTTTGAAAGAAGAGGAAAAGCTCTTGGATGTCATTTGCACGGTTTCCCGACTGAAGCACCCCAACATCTTAGCACTCAAAGGTTACTGTTTGGATAAAGGAAAGGGTCTACTTGTTTACGATTATGTTGGAAATGTCACTCTAAACGACGCCCTTCACAGCGAGGCATGCGAACCTGTGTCATGGGTTCACCGTCTCCGGATTGCTCTAGGTGTTGCTCAGGCTCTAGAGTAAGTTCCATGTGCCAGCCAAATTTATTACTCGTTATTGTGAGAGTAGCGTCTTGGTATTGGGTCTCTGACCTTTATGTGTCTCAACTCTTAAACCTGACGCAAATGTTTCCAGCTATTTGCACTCAGCGTTCTGCCGTCCCGTGGCCCACGGCAATTTGAAGGCTGCCAATGTTCTACTGGATGAAAATTTGATGCCTCGAGTTTGTGACTGTAGCTTGGTTATTTTGCGAACACTGAATATCAGTCAAGTTGACATACCGGTTAGTCATTGCTAAGGTTCTAGTTGCTGGAGTTATTCCTAAAATTCAGCAACAGTTCATAACTCACTGATGGATGATAGTTACATTTGCTAATTCTGACGCTCACACCTTATGGCTGCTTTACCTTTTGGTTGGTTTTAAGTTATCAAAAAATAAAGTATGTTTCAAAATCAAAACCAAACGAACAGCAAATGTTTGATAATAAGAAAACGCGCTCTTATTCTTGTTCCACTGTTACTATAATTTTTTAAGGAATAATGATGGTATTTTTACAAGTTATAGTAAACAACTTAAACTTTCTAAAGCAGCTATTGCAAGTGAATCAGAAGTTTGTTAGCAATCTCAATCTTCCTAAGTATGCCCATTGCAGGCATAGGTTCACTGATCGCTTTGGTGAATATTGGAAACAGGCTAATGAGATTGATATTGAAGAGATGGGCTACCATGCGCCTGATCATGGCCAACCAGGAACCAGCAGCAGAAAGAGAGACGTTTTTGCCTTCGGGGTGTTGCTGCTGGAACTGTTAACAGGAAAGAAACCTTTTGATAGGTACGTTTTGTTTTCTATATCTAGCTGTGTTCTCCTTCTTTCCGCCCACTCACCCAGCACATAGGCAGTTTAATTGAATAATGGACCCTTTTTCCATTTTTGTTTTAACAGAGCCAGGTCAGTGGAGGAGCAATATCTGGTGAAATGGGCTCCGCCCATGCTTCCTTACAGAGCGAGTTTGGAACAGTTGGTGGATCCCCGCATGAAAAGAACATTTTCGTCCAAGGCTCTTTCTCGTTATGCTGATATCATCTCCCTCTGTATACAGGTATTAACAACTTAATTTTCAAGCTAAATTTGAATTCACTCAACGGTTGCATATTTGCCATTTTGGTTCTTGCATGGCAGCCTGCAAGGCAACTCCGTCCTGCAATGAGCGAAGTTATGGAGTCTCTTGAATCTTTATACCAAATGTTCGACATTGAAAAGAGCGATGCAGCAGATGGTACTGAACTTGATCCATTTTAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1520417