Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20467	LG5	23350233	23351231	hypothetical protein	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/T	23350250	missense_variant	p.Leu328Ile
G/A	23350432	missense_variant	p.Ser267Leu
C/G	23350461	synonymous_variant	p.Ser257Ser
C/T	23350488	synonymous_variant	p.Ser248Ser
G/A	23350505	stop_gained	p.Gln243*
G/A	23350507	missense_variant	p.Thr242Met
T/C	23350521	synonymous_variant	p.Gly237Gly
C/T	23350523	missense_variant	p.Gly237Arg
A/G	23350528	missense_variant	p.Leu235Pro
G/A	23350537	missense_variant	p.Ala232Val
G/A	23350542	synonymous_variant	p.Gly230Gly
C/T	23350543	missense_variant	p.Gly230Asp
G/A	23350554	synonymous_variant	p.Asn226Asn
G/T	23350574	synonymous_variant	p.Arg220Arg
G/A	23350577	stop_gained	p.Gln219*
A/C	23350602	synonymous_variant	p.Pro210Pro
C/G	23350611	synonymous_variant	p.Gly207Gly
G/A	23350615	missense_variant	p.Ser206Leu
A/G	23350617	synonymous_variant	p.Leu205Leu
C/T	23350620	synonymous_variant	p.Gln204Gln
G/A	23350634	synonymous_variant	p.Leu200Leu
G/C	23350637	missense_variant	p.Leu199Val
C/T	23350642	missense_variant	p.Ser197Asn
G/A	23350659	synonymous_variant	p.Phe191Phe
T/C	23350665	synonymous_variant	p.Gly189Gly
G/A	23350678	missense_variant	p.Pro185Leu
G/A	23350679	missense_variant	p.Pro185Ser
A/G	23350686	synonymous_variant	p.Gly182Gly
C/T	23350688	missense_variant	p.Gly182Ser
A/G	23350690	missense_variant	p.Ile181Thr
C/T	23350701	synonymous_variant	p.Arg177Arg
C/T	23350702	missense_variant	p.Arg177Gln
G/A	23350703	missense_variant	p.Arg177Trp
G/A	23350704	synonymous_variant	p.Asp176Asp
C/G	23350706	missense_variant	p.Asp176His
A/T	23350715	missense_variant	p.Leu173Met
A/T	23350721	missense_variant	p.Leu171Met
C/T	23350735	missense_variant	p.Arg166Gln
G/A	23350750	missense_variant	p.Pro161Leu
C/T	23350759	missense_variant	p.Gly158Asp
A/G	23350800	synonymous_variant	p.Thr144Thr
G/T	23350803	synonymous_variant	p.Leu143Leu
G/A	23350810	missense_variant	p.Ala141Val
G/T	23351030	missense_variant	p.Arg68Ser
A/G	23351052	synonymous_variant	p.Val60Val
G/T	23351156	missense_variant	p.Pro26Thr
T/C	23351159	missense_variant	p.Asn25Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20467.1

MVTVLRLWFVTLLLFSPVALSELCNPHDKKVLLQIKNDLNNPYLLASWNPDTDCCQWYCVECHPKTHRITSLVILSSVPETNFSGQIPPSVGDLPYLETLEFHKLPKLTGPIQPTIAKLTKLKELYISWTNISGPVPDFLAQLTNLQFLDLSFNNLSGPIPSSLSRLPNLLSLRLDRNRLIGPIPDSFGSFKRPGPSLLLSHNQLSGPIPASLANIDPQRIDFSRNKLEGDASMLFGSNKTTQMVDVSRNLLAFDLSRVEFPTSLISLDLNHNKITGKIPVGLTAVDFLQGFNVSYNRLCGEIPQGGRLQKFDVDSYFHNKCLCGSPLPSCN*

CDS Sequence:
>Vu_20467.1

ATGGTAACTGTGTTAAGATTATGGTTTGTGACGCTGCTGTTGTTCTCCCCAGTTGCATTGTCTGAACTGTGCAACCCACACGACAAGAAAGTATTGCTGCAAATCAAGAACGACTTAAACAACCCTTACCTTCTAGCATCCTGGAACCCCGACACAGATTGCTGCCAATGGTACTGCGTTGAATGCCACCCTAAAACGCACCGCATCACCTCCCTCGTCATTTTATCCTCTGTTCCCGAAACCAATTTCTCAGGGCAAATACCACCCTCCGTCGGTGACCTACCTTACCTAGAGACCCTCGAATTCCACAAGCTTCCTAAACTCACCGGCCCAATCCAACCCACCATCGCTAAGCTCACTAAACTCAAGGAGCTCTATATAAGCTGGACCAACATTTCCGGCCCAGTACCCGATTTTCTGGCCCAGCTCACTAATCTCCAGTTTCTCGACCTTTCCTTTAATAACCTCTCCGGCCCCATACCGAGCTCGCTTTCCCGGTTGCCCAACCTGTTGTCCTTGCGCCTCGACCGGAACAGGCTCATTGGTCCAATCCCGGATTCCTTTGGATCATTCAAGAGGCCTGGCCCAAGCCTTCTGCTGTCCCACAACCAGCTTTCGGGGCCCATTCCTGCTTCCCTGGCCAACATAGACCCACAACGGATAGACTTTTCAAGGAACAAACTGGAAGGCGACGCTTCCATGCTTTTCGGAAGCAACAAAACGACGCAGATGGTTGACGTTTCGAGGAACTTGTTGGCGTTTGATTTATCGAGAGTGGAGTTTCCCACCAGCTTGATATCGTTGGATTTGAATCACAATAAAATCACCGGAAAGATTCCAGTGGGATTGACCGCAGTAGATTTTCTACAGGGGTTCAACGTGAGCTATAATCGACTTTGTGGTGAGATTCCGCAGGGAGGAAGACTGCAGAAGTTTGACGTGGATTCCTATTTTCATAACAAGTGTTTGTGTGGATCACCCCTTCCCAGTTGTAACTGA

Promoter Sequence:
>Vu_20467::LG5:23351231-23353231(-)

GGTGAAAGGTATTGAAGAATAGTATGAAATAAATGTAAAAGAAATTATGGGATTTAAGTTCAAATGTGTATTTGTGGTTAGAAAGGCTGGATGTCAATAAACAGGATTTTGATTGTGGGCTAACTGGGCACTTGACCAACTTAATTTGGAGTTTTTAAACCGTGATTTCAGTTCGTTTGATTTTTTTTAAAGTAAAAATAAATATAAAAGGAAATTTAATAGATTAATCTTTTATATTACATCACTTTAAAGATACACATATAATATTACAAGTAAATCGTTAATATTTGCATAATAAATTTAATGACTAACTTTAATAAAATAATTTAATTGATTTGATTAAAAACATTAATTAATCAATTAAGAATATGTCTATAATTAAAAATGTTTCTAATATAGATATAAATAATTTAAAAAATACAAAATTAATAAAGAAATAAAGTTTACAAAAATTGTTGAACTAGTTTTAATATGATGAGTTAGTTCATCCTATTCCATTTTTAGAGAACCAACGATGAGTTAGGGTTCTCTGTTTTACCATCCAATAAATAATATACGTTGCAATCTTTCTCATTCCAATAAACATTTTTATTTAATTTTTTATTTTTATTGATTATTACACTAGTGGAAAAAGAAGCATTATATGTAAACTGATTGTAGATTGATTGCATTTTACAATGTATGTCATAGTTGATTTTAAAAAGCATGTATAATGACTGATAAATCCAACTACGTTATAATATGTTAAAGCTAATATAAAAAACACAGATCAACAAGACCATCCGTCATAATAGATTATTTTTACCCATCATAAAAACAATTTTTGCACTAGTGTTATTTTCGTTTATCATAATTACATAAGAACTTAATAATAAAGAATTGAAATAATCATACTAATAAGTTGTATTCCATTATAAATAGTAAAAAATAAAAATATACAAGATAATAGATTATATTTCCATATACTTTGTTATTTCTCAAACATAAATAAATTGTATAGTAACATACATGGTGTACCTAGTTTGTCTATAAAATATTTGGATTTTGTCTTGTTGATTTAAGTGGTTATATCAAATTATTTAATCCCATTGTTTCTAAAATTAAAAGGTCAAAAAATTTTATTAAAAAATTAAATTAACAAACATTTGGTTTAATTGATGACATCTATTTATAATAAATGATGGTTTTGATTAATTTATTATTTGCGCATTTGATATGTGGTGTTTTAGTAAACTTCCTATTAATAAACATATATTTAACCTTTTAAACTTGTGGTCGATGACTTCTTTTAACACTGTAATCCTGAAAAATGTAATTTTTGTTTTTTAGAATATTGAAGTTTGCAATTTGGTTTTGTTGAATGAGTATACAATTTTAGAAAAGGAAAATAACTATTTTAAAAATAATTGGTTTTTTAGAAATTTTGCCTTCCATGAAGACAACTGGCTGCCACAGCTGCCAGACCTGATAATCATGAAAGTTGGCATACAACTCCCAAGTTCAAACTCTTTGTTCTTTTTTGACTAATCCAGTCCACACATTAGGCATAGACCAACCCATTAATCAATACAATAATTTATCTATTTTTCCTAAGCTTGGTGCCTAGCTTGCCCACCATCAAAATTATGCTTCTCAAGAGATTAGGAAACTCTTAAACTAGAATATGTATATTTTTTAAAAGTAAATTTTAAATCTAATTTAACTTTATAAAAGTAAATTTTGTTTCCTTATATTATGTGAAATCTTTTTAATTCTAAGATGAGAGATCTCCAACAATTTTCTCTCTTTTCTGTTCTTCAACAATAATAAATTGAGTATGGGATTCCGTGTTTGCAGATTTTGGGTAACGAGTATGATAAAAGCAATGAGATGATGTTAAGATATGGGAGCTTTCGTCACTACCGACATCATAGGAGTGATATTATTAAATTGTTCCAGCGCATGCTATAAAATTCAACACTCTCCCACAATCGTTTCACAACCTTCTGATAGCACCCAAA

Gene Sequence:

>Vu_20467(-)