Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_20458	LG5	23292824	23296100	PREDICTED: receptor protein kinase-like protein ZAR1	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, meiotic cell cycle process, cytokinesis, phosphorylation, protein phosphorylation, cytokinesis, metal ion homeostasis, meiotic cell cycle process, phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation, response to red or far red light, meiotic cell cycle process
Cellular Component	located in	extracellular region, plasma membrane, extracellular region
Molecular Function	enables	protein binding, protein kinase activity, protein kinase activity, ATP binding, protein kinase activity, protein binding, ATP binding, protein kinase activity, protein kinase activity, protein kinase activity, protein binding, protein binding, kinase activity

SNP	Position	Effect	Amino acid change
C/A	23292949	synonymous_variant	p.Gly42Gly
C/T	23293087	synonymous_variant	p.Leu88Leu
T/A	23293368	missense_variant	p.Leu182His
G/C	23293801	synonymous_variant	p.Val326Val
C/G	23294439	intron_variant
C/T	23294448	intron_variant
G/A	23294641	intron_variant
T/A	23295125	intron_variant
G/A	23295758	missense_variant	p.Ala540Thr
A/T	23295762	missense_variant	p.Tyr541Phe
G/T	23295768	missense_variant	p.Arg543Leu
G/A	23295776	missense_variant	p.Val546Ile
G/T	23295908	stop_gained	p.Gly590*

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_20458.1

MPMHHLLLSLFLFFVVPPATSLNSDGLSLLALKAAVDSDPTGVLSSWSENDATACHWPGVSCTGDRVTQLSLPDKSLSGYIPSELGFLSSLKRLSLPYNNFSNVIPPSLFNATTLIVLDLSHNSLCGSLPSHFLSLKFLRHLDLSSNYLNGSLPPTLSDLTSLTGTLNLSFNFFSGGIPATLANLPVAVSLDLRNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQTACPEAQKPGIFANPEEGFPQNPNALHPEGSDQRVKPHGGGSVAVLVISGLSVAVGAVSLSLWVFRRRWGGGEEGKLGGQKLEGEVDVGEGQDGKFVVMDEWFELELEDLLRASAYVVGKSRSGIVYKVVGVGRGSSAAANVVAVRRLSEGDATWRFKEFESEVEAIARVRHPNVVPLRAYYYAHDEKLLITDFIRNGSLHTALHGGPSNSLPPLSWAARLKIAQEAAKGLMYIHEFNGRKYIHGNIKATKILLDDELHAYVSGFGLSRLGLGPPKSIAMPPKRSSLNQSSVTTAMSSKVAASFNHYLAPEVRMAGGKFSQKCDVYSFGIVLLELLTGRMADFGAENDEKVLESFVRKAFREEQPLSDIIDQALIPEVYAKKQVIAAFHIALNCTELDPELRPRMKTVSESLDHIKYSEKQENHV*

CDS Sequence:
>Vu_20458.1

Promoter Sequence:
>Vu_20458::LG5:23290824-23292824(+)

ACTAGGGGCATTTTGGTCATCTTTATTTTCTACCAATTAAACTAATTTTTAAAATCTATCACATCAATCAAATCCTACACTAATTCTCACAAACTTTACTTTCAAATCCACTCTCAATTAACCACAAATCCACTCAAAAAAATAATTAAAAAATTACCCTCAAATCCACTCAAATCCATTCAAATCATCTCCCCCAAATACACCCAAAAGAGCAAAGAAGTTGTTTCACATCTATGAAATGCGATGTGATATTTTTAATTATTTAATATAACTATTATTTATTGATGTAACTTTTTTCCTTCTAAATTAATTAATGTTTTCGATAACACTCTTCTCAAATTCAAACATAAAAACCATTAGTTCCTAAAATACACGGATAAACACATTGTATAATATTCATGATTAATCAAAAGTATTTTAATAAGTCATAATTCTCACGTAAATCTCTTTTCAACTGTACACATCATTGAATTTGAAAAACATAAGTGGGCCAGTCAAATAGTTTAGCGTACCAATCACCAATTATTTTATGTGGTCCAGTAAACATGTAATTGAAATCTCTGTTCATATAATCACAAAAACTTACTTGCATTTACTCTCATAGTAACGATTAATATATTATTATTATATTATATATCATTTTATTAATGATGATTATAAACTATTGTCGTTGTGACTAATTTAATTAAATCTGTAAGAAATACCAACGAGAATAACAATGGAATGAAACTGTGAAGTCTCCAGTGATAATTATTAATGTGTGTGATAAATTGTGAAGGATAATCATCTCTATGAGCCCAAGAATCTTACCATGAAACGAAACATCGTCTCTAAAATAAAACAAAGTAGCTGTTTACACCTGATAATGCCACATGCACTTAATGGTTTAGTAAAAATATTATTGTAAATATACATCATACACATTCAAATATCTTCAGGAACGAAATTAGATTATAGGAATATATCGCTAATCCATGCTATCAAATGCTTAACAAATTCCTACAAACTGCACATAATTCCTCTCCACAAGAAATAATCTCGAACAAACTCTAACAATAGAGTAGTAAAATGCAACGGATTCTCATGTATAGAAGGAATGAATTAAATATATTATTGTTATTAATTAAATGATGGAATTGATTATGTTTCATTTAATTCGTGAATTTGATGATAAAAAGTGAGAGAATAATTAAAATTAAAAATAATAATATTTTGTATTCAGACATGTGTTTGATTTTGATTTTAGCTTAATTATTAAAATAATTTGAAGGACAGAAAGTAAGTTAAAAAAATCTTAATCAAATGGGATAGCAGTTTGAATCCCGTAAATGGATTTGCGGGATCTATGCTGGTAGTAGCAGCAGCATAGGCCTGTTTTTGGTTGGAACTGGAAAAAGTGAAAGAAGAGTCACAGGCGTGGTGTCCTTCTTTATACGATTTTCTGACACCAGATAAAAAATACGCTAAACTACAAACACATAACTCATCATCATCACTCATTTTCTCACATCACAAATTAAAAGCAAATATTTGTATTCCGTTTCAAAATTTCAACCCTTTGCTATAATTGCTATGATTTAACTAAAACTTAAAACACAGTAGCAGCCACTCAGTTTCGTTTCAAAGACAACTGTAAACAAGCCACAGTGTAAGTAGATTACAGGACAAATGTGGCATGGTGTTTTTTTGGATGGACTCTGTTATCTTATTCTGAACTGTGAACCAAGATTGACTAAAGTTGACTGAACCCACTCGGAACATAATCGTACCCAAAATTTTGGCTTTCACAAGTATTTATTTAAGTATTTTAGCATAGTATAGGACGTATTTAAAGTAGAAGCAAGGACGGTCAGGGAAATTCAAATCCCACCTCGAGAAATAAACCAATTTCAAAAACTCCACCATTCTCATTCTTCTTCTTCGCCTTCTTCTTCTTCTTCTTCTTCTGTACTTCACTACTTGCCATAAACAACTAATGCTCTTTCACTAACCAACAACAA

Gene Sequence:

>Vu_20458(+)

ATGCCAATGCATCATCTTCTTTTATCACTCTTTCTCTTCTTCGTTGTTCCTCCAGCCACCTCTCTCAACTCTGACGGCCTCTCCCTGCTTGCCCTCAAAGCCGCCGTGGACTCTGATCCCACCGGCGTCCTCAGCTCCTGGTCAGAAAACGACGCCACTGCATGCCACTGGCCCGGCGTGTCCTGCACCGGCGACAGAGTTACCCAACTCTCTCTCCCTGACAAGAGCCTCAGCGGTTACATTCCCTCTGAACTGGGATTTCTCAGCTCCCTCAAAAGACTCAGTCTTCCATACAACAACTTCTCCAACGTCATTCCTCCCTCTCTCTTCAACGCCACCACCCTCATTGTCCTCGACCTCTCTCACAACTCGCTCTGCGGTTCCCTTCCCTCGCACTTTCTCTCCCTCAAGTTCCTTCGCCATTTGGACCTCTCCTCCAACTATCTCAACGGTTCCCTCCCTCCTACCCTCTCCGATCTCACTTCTCTCACCGGAACTCTCAATCTTTCTTTTAACTTCTTTTCCGGCGGGATTCCGGCCACCCTTGCTAACCTGCCTGTGGCTGTGAGCCTCGACCTCCGCAACAACAACCTCACTGGGAAAATCCCCCAGGTGGGATCCCTGCTAAACCAGGGTCCCACCGCGTTTTCTGGAAACCCTGGACTCTGTGGCTTCCCTTTGCAAACCGCGTGCCCCGAAGCGCAAAAGCCTGGGATTTTCGCCAACCCTGAAGAGGGTTTCCCTCAGAACCCCAATGCGCTCCACCCCGAAGGCTCAGACCAGAGAGTGAAACCACACGGTGGCGGCTCCGTCGCTGTTCTTGTCATCTCCGGGCTTTCGGTCGCGGTTGGAGCGGTTTCTCTCTCTCTATGGGTTTTCCGGCGGCGGTGGGGCGGCGGCGAGGAGGGGAAATTGGGGGGGCAGAAGTTGGAGGGTGAGGTGGATGTGGGCGAGGGGCAAGATGGTAAATTTGTTGTGATGGACGAATGGTTTGAGTTGGAGTTGGAGGATTTGCTTAGGGCGTCTGCGTATGTTGTTGGGAAGAGTAGGAGTGGGATTGTGTACAAGGTGGTCGGGGTCGGAAGAGGGTCTTCCGCGGCGGCGAATGTGGTGGCTGTTCGGCGACTCAGTGAGGGTGATGCGACGTGGCGATTTAAGGAGTTTGAGTCTGAGGTGGAGGCCATTGCAAGGGTTCGTCACCCCAATGTGGTTCCTTTGAGAGCTTATTATTATGCCCATGATGAGAAGCTGCTTATCACCGATTTCATTCGCAATGGAAGTTTGCACACTGCTTTACACGGTATCAATTCGTGGTCTTTCTTTTTCAAATTCATTCGGGGTGCTTTAATTCTGCAATTAATTATCATATATGATGTTATCGTGGATGCGTTATTGTGGAAGTCACGTGTAATTTTGCAGCGTTTCTTGCTGTTCTTAAAATGGAACTAGTATATATGCTTAAATTTGCTGCAGCGTAGTTGCATAAGGCCAATGCTTAACATGCCCGCTTATTTTGAGTGTGCGACTTTGAATTGGTGATGGCCACCATGTGATGATGAGTTTAAATTCTAATTTTTACTCCTTTTTGAAAGTCAATTTTGTGATCATGATGATTCTACTGGGACATATGCAGGAGCTGGTGGATGAAACACTTACCTGTTCCTACTTTTTACTTTCACATGTGTCTTCTCTTTTTCTATCCTTTTGGTGGTGTTCCGTATTTCCACTACATATTTTGGGGGCCATGGTCATCGTGTCCTTTGTGAATTGTGCCTCTGCTCTTGATAACCAAAATCCCTTTTTTGTGTAATTTGTCCGTGCTGAGTTATTGCTTTATGCGGGTGAATACCTGCTATCATAGCTATGAGTGATGCTGGCAACACACTTTCCATCGGTGGTTATAACTTTTGCATGGCCCATTATCTTAGGAGGGTCCCCTTCTCCATTTACTGTCTAAACTAAACTTGAATCAATGATAAAAAGAGTAAATTCGAAAAGGTGTGTTGTAGTTTTCACTTGGGACAATTTCTCTTAATTGATCTCCTTTATTAGCTTACAGTTGTTTTAGAATTTCTTGTGAACATGCAGTAGCATTCTTCCATAATATCTTCACGGTCCTAGTTTTGTGCCGATAGTGATAGCTGCAAAAAAGTAATCATGCTTTATATTTTTGCATGAGGCCATTTGGGTGATTGAAAATCCCATGGACCACGGTCCCAATGCTGTGATTTTCATACCTCAGTGATTTGCCACGATGGATTATTGTCTTCTACCGATTCTAGGCTGCATCTACAGGTTTTCTTCTTGCATGTAATGCGGTGGTCCTCGAAGTAATGTGTATTGAGCATTATAACAACGAAGTCACTATCCATAAAATTTGATGTTAAAGAATGGATTTATTGTGACTCTACTGTAGCATCAGCAGTGTTATCTAGGAAAGATCATTGGCACTGTTTGCGACATAGCAATCGAAATCTCACGTATTATTGATGCTTTGCTTCTCATTTTTTTCATGTCATACACTGGTGGTGGTTGTGAGATCATTTTTAGTTTCCACTTTCTACTTAGGTTTTCTCAAGCATTTTCTTCTTTGTATTTGTTGTGTATGGTTGCAGGTGGGCCTTCCAATTCATTGCCACCATTGTCATGGGCAGCAAGGTTAAAAATTGCTCAAGAAGCAGCCAAGGGCTTGATGTACATACACGAGTTCAATGGTCGCAAATATATCCATGGCAACATTAAGGCAACAAAAATCTTACTAGACGATGAGCTCCATGCATACGTGTCAGGTTTTGGACTTTCTCGGCTTGGTTTGGGCCCGCCAAAGTCTATTGCAATGCCTCCAAAACGGAGCAGCTTGAACCAATCTTCTGTAACCACTGCAATGAGTTCAAAGGTTGCAGCCTCCTTTAACCACTACCTGGCACCTGAGGTGCGTATGGCCGGTGGGAAGTTCAGTCAGAAATGTGATGTGTATTCATTTGGCATTGTGCTTTTGGAACTTTTGACGGGTAGGATGGCAGATTTTGGAGCAGAAAATGATGAGAAGGTGCTGGAGAGTTTTGTGAGGAAAGCGTTCAGGGAGGAGCAGCCACTGTCTGATATCATTGACCAAGCACTCATCCCTGAAGTTTATGCTAAAAAGCAAGTGATTGCTGCATTTCATATTGCTCTGAACTGCACCGAACTCGATCCAGAGTTGCGACCACGAATGAAAACCGTGTCAGAGAGCCTTGATCACATCAAATACAGTGAAAAACAAGAAAACCATGTATAG